Tcas006638.1
Basic Information
- Insect
- Tribolium castaneum
- Gene Symbol
- bab2
- Assembly
- GCA_000002335.3
- Location
- NC:8321205-8343768[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.2e-16 4.5e-13 48.2 0.1 1 45 359 403 359 403 0.96 2 3 0.064 1.3e+02 1.9 0.2 6 18 474 487 472 489 0.81 3 3 3.2 6.7e+03 -3.6 0.0 29 39 499 509 499 512 0.81
Sequence Information
- Coding Sequence
- ATGTGCGCAGCTCAACAGTACTGCCTCCGGTGGAACAACCACCGGTCAAACCTACTCACAGTCTTTGACGAGCTCCTCCAGAACGAAGCTTTCACCGACGTTACCCTTGCTTGCGAAGGTGGCAGTCCAATAAAATGCCACCGGATGGTCCTAGCCGCCTGTTCCCCTTATTTCCAAAACTTGTTCACGGACCTACCATGCAAGCACCCGGTGGTGGTCCTCAAAGACGTCAAGTATACGGAAATCAAAGCTATATTAGAGTACATGTACCGAGGCGAGGTCAACGTGGCCCAGGACCAGCTCGCCGCCTTGCTCAAAGTGGCCGAAGCCCTCAAAGTCAAGGGCTTGGTCGAAGAAAACCGCTCCAGCGGGGGCTTCTCCTGCAACCGCGACGAGGAGCCCATGGAGCACTCCCCCACGGGGACCAGCAACTCCAACTCCAGCGTCCAGAACGTGCACAGTAGCAGTAATAACTCGCCCCCGCATTCCACCAACAGCCACTACAAGAACCCCTACGGTGGGATGTACAAGTCGGGGAGCATCGACCGCAATCCCAGGATGAATCTGCCCATCTGGGCAGTGCCGGGCTTGCCCATGCCCTCGCACTCGAATACTGTTCCTAATCAAAACCACCCCCATGCTGCCGCCACCGCTGCAGCGGCGATGTTGAGTAGTTGTTATGAGGCGGCGACTGATATGTCGCCTTTGAAAAGGAAAAAATTGTCCAGTCTTCTCATGAATAGAGACACTCCGATTTTGAGGACTGTTCTAGGACAAGGTCAGGCGGATTCGTCGCAACCTGTAAGTCTGGTCTGTCATCCGGACAGCCACGACCAGCATTCGAACGGACCTGACCAAGAGCGCATGGAAAAGCACTTGAAAAACGAGCCCTCCGAAGACGCCCAATCCCCTTACACCGACTTCACGCTGATGAACGACGACGAAGAAAAATCAAAATTAGCGATTCCGTCCTCTTCCCCCCAGTCCTACTCCAGCGAAATGCGCGCCGTGTCTTCAGGAATAGCAACCTACGTCCCGAACCAGAAACCCGAATGGAAGCGCTACAAGCAATACACCCGCGAAGACATCATGTCCGCCATCGAGGCGGTTCGAAACGGTATGTCAGCCCTGCAAGCGGCCCGAAAGTACGGCGTGCCCTCGCGGACGCTCTACGACAAGGTAAAAAAGCTGGGTATAACGACAAGCCGGCCCTTCAAGCGGGGCTCCAACGGGAGCCCGGCGTGCTTCCCGTACGGGCTGAGCGGGACAGGGTCCCCGTACGGGGGGCACATGCCCGAGATGGACGATCCTTCCGCGAATAGCAACAACACGTCGAGTCTCTTGGAGGCCACGTTCCTCCAACACGCGTTCGAGGGACGTGGGGGAGATGACCGGGAGGCGTTGGCGGCGATGGCGGTGGCGGCGGCGGCGCATGCTGTGGTCTCGGGGCACTCGACGAGTCCTTCCAACCATGGGCATGCAACGAGTCCAAGTCCGAGTCCAACTCTGCTGAAATATATGAGGCAGAACAGCATGACGCCCTCGCCGGCTCCTGGCAGTGAGCACCACCATAGTGAGACTAACGGGAGTTCGGAGCGGGAGCATGACGATGACGATCAAGTGGAGGATTTATCGGTTGGGAGGAAGCAAGTGATAATGCCGCCGATGAATCAGGTGTCGACGATAATGAAGAAGGAGGAGCTGCTGAAGGACATGATCAAGGAGGAGGCTCGGCGGGAGATAAGCGTGGAGGAGGCGGAATAG
- Protein Sequence
- MCAAQQYCLRWNNHRSNLLTVFDELLQNEAFTDVTLACEGGSPIKCHRMVLAACSPYFQNLFTDLPCKHPVVVLKDVKYTEIKAILEYMYRGEVNVAQDQLAALLKVAEALKVKGLVEENRSSGGFSCNRDEEPMEHSPTGTSNSNSSVQNVHSSSNNSPPHSTNSHYKNPYGGMYKSGSIDRNPRMNLPIWAVPGLPMPSHSNTVPNQNHPHAAATAAAAMLSSCYEAATDMSPLKRKKLSSLLMNRDTPILRTVLGQGQADSSQPVSLVCHPDSHDQHSNGPDQERMEKHLKNEPSEDAQSPYTDFTLMNDDEEKSKLAIPSSSPQSYSSEMRAVSSGIATYVPNQKPEWKRYKQYTREDIMSAIEAVRNGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGSNGSPACFPYGLSGTGSPYGGHMPEMDDPSANSNNTSSLLEATFLQHAFEGRGGDDREALAAMAVAAAAHAVVSGHSTSPSNHGHATSPSPSPTLLKYMRQNSMTPSPAPGSEHHHSETNGSSEREHDDDDQVEDLSVGRKQVIMPPMNQVSTIMKKEELLKDMIKEEARREISVEEAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01277622;
- 90% Identity
- iTF_01409879;
- 80% Identity
- iTF_01480238;