Tvap016798.1
Basic Information
- Insect
- Trialeurodes vaporariorum
- Gene Symbol
- -
- Assembly
- GCA_011764245.1
- Location
- HIC:49222331-49224766[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 1.1 2.4e+03 -1.3 0.0 21 44 31 54 24 57 0.80 2 23 0.00092 2.1 8.6 0.1 20 45 58 83 51 90 0.87 3 23 0.046 1e+02 3.1 0.0 21 46 87 112 82 118 0.86 4 23 0.034 76 3.6 0.1 21 44 115 138 111 143 0.90 5 23 0.013 29 4.9 0.0 21 46 143 168 139 175 0.86 6 23 0.67 1.5e+03 -0.6 0.0 21 45 171 195 167 203 0.82 7 23 0.22 5e+02 0.9 0.0 21 45 199 223 190 231 0.83 8 23 0.19 4.4e+02 1.1 0.0 21 46 227 252 209 259 0.82 9 23 0.046 1.1e+02 3.1 0.1 21 46 255 280 247 286 0.85 10 23 0.045 1e+02 3.2 0.0 21 46 283 308 279 316 0.86 11 23 2.1 4.8e+03 -2.2 0.0 21 43 339 361 320 364 0.74 12 23 0.00097 2.2 8.5 0.1 20 45 394 419 389 426 0.87 13 23 0.048 1.1e+02 3.0 0.0 21 46 423 448 419 454 0.86 14 23 0.02 45 4.3 0.1 21 46 451 476 446 484 0.86 15 23 0.32 7.2e+02 0.4 0.0 21 45 479 503 475 510 0.84 16 23 0.047 1.1e+02 3.1 0.1 21 46 507 532 499 538 0.85 17 23 0.046 1e+02 3.1 0.0 21 46 535 560 531 567 0.85 18 23 2 4.5e+03 -2.1 0.0 21 45 563 587 559 596 0.77 19 23 2 4.5e+03 -2.1 0.0 21 44 591 614 579 620 0.77 20 23 0.38 8.6e+02 0.2 0.0 21 44 619 642 601 647 0.84 21 23 0.95 2.2e+03 -1.1 0.0 22 46 676 700 657 707 0.80 22 23 0.0067 15 5.8 0.1 21 51 731 761 723 763 0.84 23 23 0.1 2.3e+02 2.0 0.1 23 48 761 786 755 792 0.83
Sequence Information
- Coding Sequence
- ATGTTTAATGACAAATCATTTGCATGCACTTACTGCAATGCAAAGTTTTCTCAAAAGGGCCACATGATCGAGCATATCAGAAAACATACCGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCGGAAGAGCGATCTGAAGCTTCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGAGAGAGCAATCTGAAGCGACACATCAGAACACATACCGATGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTGGAGAGAGCAATCTGAAGCGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCATAGCAAAATTTACCATAAAGAGCCATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGCGACACATCAGAACACATACCGGTGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTAACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAAACTATTTGAATGCACTCACTGCAATGCAAAATTTGCTCGGAAGAGCGATCTGAAGCTTCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGAGAGAGCAATCTGAAGCGACACATCAGAACACATACCGATGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCAGTCACTGTAATGCAAAATTTGCTCAGAAAAGCCATATGAAAAGACACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGCGACACATCAGAACACATACCGGTGAAAAACCATTTAAATGTACTCACTGTATAGCAAAATTTTCTGTAAAGAGCAATCTGAAGAAGCACATCAGAACACACACCGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAAACCATTTGAATGCACTCATTGTAATGCGAAATTTGCTGACAAGAGCAAAATGAAGAGTCACATCAGAACACACACTGGTGAAAACCCATTTGAATGCACTCACTGCAATGCAAAATTTGCTAGTATGAGCATTCTGAAGCGTCACATCAGAACACACACTGGTGAAAAACTATTTGAATGCACTCACTGCAATGCAAAATTTGCTCACAAAACCGATCTGAAGAAGCACATCAGAACATTTACTGGTGAAAAATCATTTGAATGCACTCACTGCGATGCAAAATTTGCTCGAAAGAGCAATCTGAAGTCTCACATTAGAACACATACCGGTGAAAAACCATTCGAATGCACTGATTGCAATGCAAAATTTGCTTGGAAGAGCGTTCTGAAGAATCACATCAGAACACATACTGGTGAAAAACCATTTGAATGCACTCACTGCAATGCAATATTTGCTCGAGAGAGCGCTCTGAAGCGACACATCAGAACACATACAGGGACAAAACCATTCGAATGCACTCACTGCAATGCAAAATTTGCTCGTAAGAGCAATCTGAAGAAGCACATCAGAACACATACCAGTGAAAAACCATTTGAATGCAAAATTTCATCAAAATCACTCTCTAAGCTTATTAGAACACATGCTGGTGATGAATGA
- Protein Sequence
- MFNDKSFACTYCNAKFSQKGHMIEHIRKHTGEKPFECTHCNAKFARKSDLKLHIRTHTSEKPFECTHCNAKFARESNLKRHIRTHTDEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECSHCNAKFAQKSHMKRHIRTHTGEKPFECTHCNAKFAGESNLKRHIRTHTGEKPFECTHCIAKFTIKSHLKKHIRTHTGEKPFECSHCNAKFAQKSHMKSHIRTHTGEKPFECTHCNAKFASMSILKRHIRTHTGEKPFECTHCNAKFAHKTDLKRHIRTHTGEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECTHCNAKFADKSKMKSNIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGEKLFECTHCNAKFARKSDLKLHIRTHTSEKPFECTHCNAKFARESNLKRHIRTHTDEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECSHCNAKFAQKSHMKRHIRTHTGEKPFECTHCNAKFASMSILKRHIRTHTGEKPFECTHCNAKFAHKTDLKRHIRTHTGEKPFKCTHCIAKFSVKSNLKKHIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGEKPFECTHCNAKFADKSKMKSHIRTHTGENPFECTHCNAKFASMSILKRHIRTHTGEKLFECTHCNAKFAHKTDLKKHIRTFTGEKSFECTHCDAKFARKSNLKSHIRTHTGEKPFECTDCNAKFAWKSVLKNHIRTHTGEKPFECTHCNAIFARESALKRHIRTHTGTKPFECTHCNAKFARKSNLKKHIRTHTSEKPFECKISSKSLSKLIRTHAGDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01478290;
- 90% Identity
- iTF_01478290;
- 80% Identity
- iTF_01478290;