Tzet003989.1
Basic Information
- Insect
- Trachymyrmex zeteki
- Gene Symbol
- -
- Assembly
- GCA_001594055.1
- Location
- NW:754824-757845[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0034 0.22 11.3 2.8 2 23 218 239 217 239 0.95 2 11 0.00057 0.038 13.8 3.3 3 23 244 265 243 265 0.95 3 11 3.2e-05 0.0021 17.7 1.1 3 23 276 296 274 296 0.95 4 11 0.0026 0.17 11.7 2.3 1 23 330 352 330 352 0.98 5 11 0.001 0.068 13.0 3.2 1 23 355 378 355 378 0.93 6 11 0.0023 0.15 11.9 1.8 1 22 392 413 392 416 0.90 7 11 0.0015 0.098 12.5 0.3 1 23 430 453 430 453 0.97 8 11 0.15 9.8 6.2 2.2 1 23 459 483 459 483 0.96 9 11 0.00034 0.022 14.5 0.3 2 23 490 512 489 512 0.91 10 11 7.2e-08 4.7e-06 26.0 1.0 1 23 518 540 518 540 0.97 11 11 8.9e-05 0.0059 16.3 7.6 1 23 546 569 546 569 0.96
Sequence Information
- Coding Sequence
- ATGATGACGCTACGTTTGTTCGACAACGAGGATTATTCCACACTAGATACTATTCCAAATGTGTGTACGGAGAATAGTGAAATGGAGAGCTATGATTACCTGAGAGAATGCATCAGCAATCTTGAGAATAAGAACTCTGAGGTCGGTCTAGCAGCTAATTCTACAGGTGTCACAGACATTAGTTTACAGGAAGATGGTTTAGACGATGTTAATTTGAATagtattgattttaattttatgaaaattgaaagCTTATTCCTACAAAATACCGAGGAATCTACAAGTTGTATAAagaatgaagaagaaaaaacaaaacaagGCAGCTCTATAAATGTTGATATTTCACACTCGATTCAACATTTCAACACAATGAGTCtgaatttctcaaatttttcaaacagcAAAGATTCAGATGATATAACAACTGTTCATAATAATGAATCCTATACATTCGACAAAGATCAATGTTTAGAAAGTAAGAACATAGAGAACTACAATTGTTCTATCAAActttatacagaaaataatacagaTACAGATTCTAATATCACTAAAGATGTcagtaatataaatcaaagtaTTATATCCGAATTGaaacgtgaaataaaaattaataatctggAGTTATCAGATGGAGATGAACAGTTTCAAAAGTGTGAGCAATGTCTAATGACGTTTAGATATAAAAGACACTTGGATCGTCATTTGGAGGGCCATCAAAAAAATAACTGTCCTCActgtaatgaaaaattcgcCAGACGAAAGCATTTAGATGTCCATTTGTTTCGCGCGCATGGAGAAAGGGTAGTTAGGCATCCTCATTTGTGCGACGTATGTCCGAAAAGTTTTCCCAAACGCGCCCTTTTGAACCGTCATAGAGCGAAGCATACCTATCAAAACGGCAAGGTATGTTCGGATTGCGGAGATATGATAAATGTGGATGTAGATGAAAAAGAGCACAAGGAGAATCACTGTAAGAAAAGGCAATTCAAATGCCAGCAATGTTCACAAACGTTCAGTATCAAACAGACGTATGTATCTCACATTCAGAATCACGACAACTATAAGTGTCCACACTGTGATATTACTTTTGCATCGAAGAAGAAGGTGCATGAACACTTTAAAGCGGTTCATATCCCAAAATTAAGCGAGCAAGAATCAGCAAATgGTCCATATTTTTGCGCTGATTGCAGACACtcgtttgtaaaaaaagacgACTATTTTCGACACTTGGAGTCTGCGTTACATCTTAATAAAGTTAACAAGGATATACCTGTAAGGGCTATATTCTCCTGCGCAATCTgttccaaaaaattaattactcaaAGAGCTCTGGATCAACATGTCAGACGTATTCACAAGGGCGCAAAGCGATTCGTCTGTAATATATATGGGTGTACTTTTCAGTGTGCCAGACGGACAGATCTAGATAGGCACAAACAACTGCACGTAGAAGAGCGAAATATCGTATGCGAGCATTGCGGCAAAACGTTTACCAGTGTCAGCATCCTCAAGGATCATGtactttatatacatagtaAGGAGCGACAATTCATCTGCGAAGAATGTGGCAAAGCGTTTAAGAGAAACAGCTTATTGAAAAGACATAAATTGTCGCACGAGCAACATCGGCCGTTTGCCTGTATGCAATGTAACACCGCGTTCAAACGCTCGCACCATCTCACTCGTCACATGGAAACTTGTCATAGAATTACactggaaaaaaagaaaaagGTGGTAAAACTCATGAAAACAAAGGATGGTCATCTTGTGCCAGTGCCAGATAAACCAAACAGATCAGAAACTGATAAAGTAAAAGCCGCAAAGGGATGTGATTCAATTGCAAAgaataaagagaaagattgttctgttataaatgtaaagaaagaGGCTGCAAATACTAATTCGCAACTGGAAATACAACCATCGTTAAATCCTGAAGAAAACTCGGAATGCCCGAACTTGTCGTTAGAACCTACAAATTTATCTATCGTCGAGTCTATTCCTCAAGTTTTCTCGTTGGTAGATGTAAACACGGGACAAGTGCTTACTGTAGAAATTACCAATAATTCGGAATTGTTATCTACTAATGAACTTGTTAATCAACTTGGAACAAATTGCaatgaaatattgaatttaccCGATTATCCAGATACAGACTTTCAAAATAGTCTTTTAAATATCGATCAAATGTGTTATGACAATACAAATTATTCAGAAATGTCGTTGGAAAATATTGAAGGTTCGTTCCCGCTTGTAAGTAATAATAGTAAGATGGAAATGATAGAAAGCTATTTAACTCACGAGTTTCCAGCATTCCTTAATATTTGA
- Protein Sequence
- MMTLRLFDNEDYSTLDTIPNVCTENSEMESYDYLRECISNLENKNSEVGLAANSTGVTDISLQEDGLDDVNLNSIDFNFMKIESLFLQNTEESTSCIKNEEEKTKQGSSINVDISHSIQHFNTMSLNFSNFSNSKDSDDITTVHNNESYTFDKDQCLESKNIENYNCSIKLYTENNTDTDSNITKDVSNINQSIISELKREIKINNLELSDGDEQFQKCEQCLMTFRYKRHLDRHLEGHQKNNCPHCNEKFARRKHLDVHLFRAHGERVVRHPHLCDVCPKSFPKRALLNRHRAKHTYQNGKVCSDCGDMINVDVDEKEHKENHCKKRQFKCQQCSQTFSIKQTYVSHIQNHDNYKCPHCDITFASKKKVHEHFKAVHIPKLSEQESANGPYFCADCRHSFVKKDDYFRHLESALHLNKVNKDIPVRAIFSCAICSKKLITQRALDQHVRRIHKGAKRFVCNIYGCTFQCARRTDLDRHKQLHVEERNIVCEHCGKTFTSVSILKDHVLYIHSKERQFICEECGKAFKRNSLLKRHKLSHEQHRPFACMQCNTAFKRSHHLTRHMETCHRITLEKKKKVVKLMKTKDGHLVPVPDKPNRSETDKVKAAKGCDSIAKNKEKDCSVINVKKEAANTNSQLEIQPSLNPEENSECPNLSLEPTNLSIVESIPQVFSLVDVNTGQVLTVEITNNSELLSTNELVNQLGTNCNEILNLPDYPDTDFQNSLLNIDQMCYDNTNYSEMSLENIEGSFPLVSNNSKMEMIESYLTHEFPAFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126217;
- 90% Identity
- iTF_01262018; iTF_00014947; iTF_01477135; iTF_01476473; iTF_00016245; iTF_00015605; iTF_00016883; iTF_00181529; iTF_00182184; iTF_00182823;
- 80% Identity
- -