Acha005874.1
Basic Information
- Insect
- Acromyrmex charruanus
- Gene Symbol
- -
- Assembly
- GCA_017607545.1
- Location
- JAANIC010004451.1:1935787-1938564[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.006 0.31 10.6 2.5 2 23 216 237 215 237 0.95 2 11 0.00061 0.031 13.8 3.3 3 23 242 263 241 263 0.95 3 11 3.4e-05 0.0018 17.7 1.1 3 23 274 294 272 294 0.95 4 11 0.0016 0.084 12.4 2.3 1 23 328 350 328 350 0.98 5 11 0.0011 0.057 13.0 3.2 1 23 353 376 353 376 0.93 6 11 0.0024 0.13 11.9 1.8 1 22 390 411 390 414 0.90 7 11 0.0016 0.082 12.5 0.3 1 23 428 451 428 451 0.97 8 11 1.2 61 3.4 3.9 1 23 457 481 457 481 0.95 9 11 0.00077 0.04 13.4 0.3 2 23 488 510 487 510 0.91 10 11 7.6e-08 3.9e-06 26.1 1.0 1 23 516 538 516 538 0.97 11 11 9.5e-05 0.0049 16.3 7.6 1 23 544 567 544 567 0.96
Sequence Information
- Coding Sequence
- ATGATGACGCTACGTTTGTTCGACAACGAGGATTATTCCACACTGGATGCTATTCCAAATGTGTGCATGGAGAATGGTGAGATGGAGAGTTATGATTACCTGAGAGAATGCATCAGCAATCTGGAGAATAAGAACTCTGAGGTCGGTCTAGCAGCTAATTCTACAGGTGTCGCAGACATTAGTTTACAAGGAGATGGTTTAGACGATGTTAATTTGAAtagtattgattttaattttatgaaaatcgaAAGCTTATTCTTACAAAATACCTTGGACTCTACAAATTGTATAAAGAATGAAGaggaaaaaacaaaacaagaCAGATCTATAGATGTGGATATTTCACACTCAATTCAACATTTCAACACAATGAGTCTGAActtctcaaatttttcaaatagcaAAGATTCAGATAGTATAACAACTGTTCATAATAATGATTCCTATACATTCGACAAAGATCATTGTTTAGAAAGTAAAAACATAGAGAATTACAATTGTTCTGTCAAActttatacagaaaatatagaTACAGATTCTAATGTCACTAAAGATGTCagtaatataaatcaaagtaTATCCGAATTGAAAcgtgaaataaaagttaataatctGGAGTTATCAGATGGAGATGAACAGTTTCAAAAGTGTGAGCAATGTCTAATGATGTTCAGATATAAAAGACACTTGGATCGTCATTTGGAGGGTCATCAGAAAAATAACTGTCCTCactgtaatgaaaaattcgcCAGACGAAAGCATTTAGATGTCCATTTGTTTCGCGCGCATGGAGAAAGGGTAGTTAGACATCCTCATCTATGCGACGTATGTCCGAAAAGTTTTCCCAAACGCGCCCTTTTGAACCGTCATAGAGCAAAGCACACCTATCAGAATGGCAAGGTATGTTCGGATTGCGGAGATATGATAAACATGGATACAGACGAAAAAGAACACAAGGAgaatcattgtaaaaaaaggcAATTCAAGTGCCAGCAATGTTCGCAAACGTTCAGTATCAAGCAGACATATATATCTCATATTCAGAATCACGATAACTATAAATGTCCACACTGTGATATTACTTTTGCATCGAAAAAGAAGGTGCATGAGCACTTTAAAGCGGTTCATATCCCAAAATTAAACGAGGAAGAATCGGCAAATGgtCCATATTTTTGCGCTGATTGCAGACACTCGTTTGTAAAGAAAGACGACTATTTTCGACACTTGGAGTCTGCGTTACATCTTAATAAAGTTAACAAGGATATACCTGTAAGGGCTATATTCTCCTGTGCAATCtgttcgaaaaaattaattacgcaAAGAGCTCTGGATCAACATGTCAGGCGTATTCACAAGGGCGCAAAGCGATTCGTCTGTAATATATATGGGTGTACGTTTCAGTGTGCCAGAAGGACAGATCTAGATAGGCACAAACATCTGCATGTAGAAGAACGAAATATCGTATGCGAGCATTGTGGCAAAATGTTTACCAGTATCAGCATCCTCAAGGATCACGTACTTTATATTCATAGTAAGGAGCGACAATTTATCTGCGAAGAATGTGGCAAAGCTTTTAAGAGAAACAGTTTATTGAAGAGACATAAATTGTCGCACGAGCAACATCGGCCGTTTGCCTGTATGCAATGTAACACCGCATTCAAACGCTCGCACCATCTCACTCGTCACATGGAAACCTGTCATAGAATCAcactggaaaaaaagaaaaaggTGGTAAAACTCATGAAAACAAAGGATGGCCATCTTGTGCCAGTGCCAGATAAACCAAACAGATCAGAAACTGATAAAGTAAAAGTCGGAAAGGGATGTGAatcaattgcaaaaaataaagagaaagattGTTCCgttataaatgtaaagaaaGAGGTTGCAAATGCTAATTCGCAACTGGAAATACAACCATCATTAAGTCCTGAAGAAAACTCCGAATGCCGGAATTTGTCGTTAGAACCTACAAATTTATCTATCGTCGAGTCTATTCCTCAAGTTTTCTCGTTAGTAGATGTAAACACAGGACAGGTGCTTACTGTAGAAATTACCAATAATTCGGAATTATTACCTACTAATGAACTTGTTAATCAACTTGGAACaaattgtaatgaaatattgaatttaccCGATTATCCAGATACAGAATTTCAAAGTAGTCTTTTAAATATCGATCAAATGTGTTATGACAATACAAATTACTCTGAAATATCATTGGAAAATATTGAAGGTTCGTTCCCGCttgtaagtaataataataagatggAAATGATAGAAAGCTATTTAACTCATGAGTTTCCAGCATTCCTTAATATT
- Protein Sequence
- MMTLRLFDNEDYSTLDAIPNVCMENGEMESYDYLRECISNLENKNSEVGLAANSTGVADISLQGDGLDDVNLNSIDFNFMKIESLFLQNTLDSTNCIKNEEEKTKQDRSIDVDISHSIQHFNTMSLNFSNFSNSKDSDSITTVHNNDSYTFDKDHCLESKNIENYNCSVKLYTENIDTDSNVTKDVSNINQSISELKREIKVNNLELSDGDEQFQKCEQCLMMFRYKRHLDRHLEGHQKNNCPHCNEKFARRKHLDVHLFRAHGERVVRHPHLCDVCPKSFPKRALLNRHRAKHTYQNGKVCSDCGDMINMDTDEKEHKENHCKKRQFKCQQCSQTFSIKQTYISHIQNHDNYKCPHCDITFASKKKVHEHFKAVHIPKLNEEESANGPYFCADCRHSFVKKDDYFRHLESALHLNKVNKDIPVRAIFSCAICSKKLITQRALDQHVRRIHKGAKRFVCNIYGCTFQCARRTDLDRHKHLHVEERNIVCEHCGKMFTSISILKDHVLYIHSKERQFICEECGKAFKRNSLLKRHKLSHEQHRPFACMQCNTAFKRSHHLTRHMETCHRITLEKKKKVVKLMKTKDGHLVPVPDKPNRSETDKVKVGKGCESIAKNKEKDCSVINVKKEVANANSQLEIQPSLSPEENSECRNLSLEPTNLSIVESIPQVFSLVDVNTGQVLTVEITNNSELLPTNELVNQLGTNCNEILNLPDYPDTEFQSSLLNIDQMCYDNTNYSEISLENIEGSFPLVSNNNKMEMIESYLTHEFPAFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126217;
- 90% Identity
- iTF_01477846;
- 80% Identity
- -