Acep003234.1
Basic Information
- Insect
- Atta cephalotes
- Gene Symbol
- -
- Assembly
- GCA_000143395.2
- Location
- NW:1067705-1070464[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0036 0.21 11.3 2.8 2 23 213 234 212 234 0.95 2 11 0.00061 0.035 13.8 3.3 3 23 239 260 238 260 0.95 3 11 3.4e-05 0.002 17.7 1.1 3 23 271 291 269 291 0.95 4 11 0.0016 0.094 12.4 2.3 1 23 325 347 325 347 0.98 5 11 0.0011 0.064 13.0 3.2 1 23 350 373 350 373 0.93 6 11 0.011 0.62 9.8 3.0 1 22 387 408 387 411 0.88 7 11 0.0016 0.092 12.5 0.3 1 23 425 448 425 448 0.97 8 11 1.2 69 3.4 3.9 1 23 454 478 454 478 0.95 9 11 0.00036 0.021 14.5 0.3 2 23 485 507 484 507 0.91 10 11 7.6e-08 4.4e-06 26.1 1.0 1 23 513 535 513 535 0.97 11 11 9.5e-05 0.0055 16.3 7.6 1 23 541 564 541 564 0.96
Sequence Information
- Coding Sequence
- ATGATGACGCTCCGTTTGTTCGACAACGAGGATTATTCCACACTGGATGCTATTCCAAATGTGTGCATGGAGAATGGTGAAATGGAGAGTTATGATTATCTGAGAGAATGCATCAGCAATCTAGAGAATAAGAACTCTGAAGTCGGTCTAGCAGCTAATTCTACAGGTGTTACAGACATTAGTTTACAGGGAGATGGTTTAGAtgatgttaatttaaatagtattgattttaattttatgaaaatcgaAAGCTTATTTCTACAAAATACCTTGGACTCTACAAATTGTATAAAgaatgaagaagaaaagacGAAACAAGATAGCTCTATTGATGTTGATATTTCACACTCGATTCAACATTTCAACACAATGAGTCTgaacttttcaaatttttcaaacagcAAAGATTCAGATAATGTAACGACTATTCACAATAATGATTCCTATACATTCAACAAAGATCAATGTTTAGAAAGTAAGAACACAGAGAACTACAATTGTTCTGTCAAActttatacagaaaatatagaTACAGATTCTAATGTCActaatataaatcaaagtaTTATATCTGAATTGAAACGTGaagtaaaagttaataatctGGAATTATTAGATGGAGATGAACAGTTTCAAAAGTGTGAGCAATGTCTAATGACGTTCAGATATAAAAGACATTTGGATCGTCATTTGGAAGGTCATCAGAAAAATAACTGTCCTCActgtaatgaaaaattcgCTAGACGAAAGCATTTAGATGTCCATTTGTTTCGCGCACATGGAGAAAAGGTAGTTAGACATCCTCATTTGTGCGACGTATGTCCGAAAAGTTTTCCCAAACGCGCCCTTTTGAACCGTCATAGAGCGAAGCACACCTATCAGAACGGCAAGGTATGTTCGGATTGCGGAGATATGATAAACATGGATATAGATGAAAAAGAACACAAGGAgattcattgtaaaaaaaggcAATTCAAGTGCCAGCAATGTTCGCAAACGTTCAGTATCAAGCAGacatatatatctcatattcAGAATCACGATAACTATAAGTGTCCACATTGTGATATTACTTTTGCATCGAAGAAGAAGGTGCACGAGCACTTTAAAGCAGTTCATATCCCAAAATTAAACGAGGAAGAATCGGCAAATGgtCCACATTTTTGCGCTGATTGTAGACACTCATTTGTAAAGAAAGATGACTATTTTCGACACTTGGAATCCGCGTTACATCTCAATAAAGTTAACAAGGATATACCTGTAAGAGCTATATTCTCCTGTGCAATctgttcaaaaaaattaattacgcaAAGAGCTCTGGATCAACATGTCAGACGTATTCACAAGGGCGCAAAGCGATTCGTCTGTAATATATATGGGTGTACGTTTCAGTGTGCCAGAAGGACAGATCTAGATAGGCACAAACATCTGCATGTAGAAGAGCGAAATATCGTATGCGAGCATTGTGGCAAAACGTTTACCAGTGTCAGCATCCTCAAGGATCACGTACTTTATATTCATAGTAAGGAACGACAATTTATCTGTGAAGAATGTGGCAAAGCTTTTAAGAGAAACAGTTTATTAAAGAGACACAAATTGTCGCACGAGCAACATCGGCCGTTTGCTTGTATGCAATGTAACACCGCATTCAAACGCTCGCACCATCTCACTCGTCACATGGAAACTTGTCATAGAATCACactggaaaaaaagaaaaaggtGGTAAAACTCATGAAAACAAAGGATGGCCATCTTGTGCCAGTGCCAGATAAACCAAATAGATCAGAAACTGATAAAGTAAAAGCCGAAAAGGGATGTGAatcaattgcaaaaaataaagaaaaagattattccgttataaatgtaaagaaaGAGGCTGCAAATGTTAATTCCCAATTGGAAATACAATCATTAAATCCTGAAGAAAACTCCGAATGCCGAAACTTGTCGTTAGAATCTACAAATTTATCTATCGTCGAGTCTATTCCTCAAGTTTTCTCATTAGTAGATGTAAACACGGGACAAGTGCTTACTGTAGAAATTACCAATAATTCGGAATTGTTACCTACTAATGAACTTGTTAATCAACTTGGAACaaattgtaatgaaatattgaatttaccGGATTATTCAGATACAGAATTTCAAAATAGTCTTCTAAATATCGATCAAATGTGTTATGACAATACAAATTACTCAGAAATATCATTGGAAAATATTGAAGGTTCGTTCCCGCTtgtaagtaataatagtaagaTGGAAATGATTGAAAGCTATTTAACTCATGAGTTTCCAGCATTCCTTAATATTTGA
- Protein Sequence
- MMTLRLFDNEDYSTLDAIPNVCMENGEMESYDYLRECISNLENKNSEVGLAANSTGVTDISLQGDGLDDVNLNSIDFNFMKIESLFLQNTLDSTNCIKNEEEKTKQDSSIDVDISHSIQHFNTMSLNFSNFSNSKDSDNVTTIHNNDSYTFNKDQCLESKNTENYNCSVKLYTENIDTDSNVTNINQSIISELKREVKVNNLELLDGDEQFQKCEQCLMTFRYKRHLDRHLEGHQKNNCPHCNEKFARRKHLDVHLFRAHGEKVVRHPHLCDVCPKSFPKRALLNRHRAKHTYQNGKVCSDCGDMINMDIDEKEHKEIHCKKRQFKCQQCSQTFSIKQTYISHIQNHDNYKCPHCDITFASKKKVHEHFKAVHIPKLNEEESANGPHFCADCRHSFVKKDDYFRHLESALHLNKVNKDIPVRAIFSCAICSKKLITQRALDQHVRRIHKGAKRFVCNIYGCTFQCARRTDLDRHKHLHVEERNIVCEHCGKTFTSVSILKDHVLYIHSKERQFICEECGKAFKRNSLLKRHKLSHEQHRPFACMQCNTAFKRSHHLTRHMETCHRITLEKKKKVVKLMKTKDGHLVPVPDKPNRSETDKVKAEKGCESIAKNKEKDYSVINVKKEAANVNSQLEIQSLNPEENSECRNLSLESTNLSIVESIPQVFSLVDVNTGQVLTVEITNNSELLPTNELVNQLGTNCNEILNLPDYSDTEFQNSLLNIDQMCYDNTNYSEISLENIEGSFPLVSNNSKMEMIESYLTHEFPAFLNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126217;
- 90% Identity
- iTF_01477846;
- 80% Identity
- -