Tzet009605.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex zeteki
Gene Symbol
-
Assembly
GCA_001594055.1
Location
NW:1055776-1059050[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 5.2e-05 0.0034 17.0 4.3 1 23 266 288 266 288 0.99
2 12 0.31 21 5.2 6.4 1 23 293 315 293 315 0.98
3 12 6e-05 0.0039 16.9 1.4 3 23 326 346 325 346 0.99
4 12 1.6e-05 0.0011 18.6 4.2 1 23 433 455 433 455 0.97
5 12 0.00015 0.0099 15.6 1.3 1 22 460 481 460 484 0.91
6 12 3.8e-06 0.00025 20.6 1.2 1 23 523 546 523 546 0.96
7 12 1.4e-05 0.00093 18.8 2.6 1 23 577 599 577 599 0.99
8 12 0.00012 0.0078 15.9 4.0 1 23 613 635 613 635 0.96
9 12 0.00011 0.0074 16.0 4.7 1 23 641 663 641 663 0.98
10 12 0.00018 0.012 15.4 1.4 1 23 669 691 669 691 0.98
11 12 3.4e-05 0.0022 17.6 6.5 1 23 697 719 697 719 0.98
12 12 0.00016 0.01 15.5 0.3 1 21 725 745 725 746 0.93

Sequence Information

Coding Sequence
ATGTCAATCTCCATGCAGATTGACAGCGGCATGTTGACGAATCCAGACACCAGTCTCTGCCGCGTCTGCCTAACCGTCGATCACAACAACCAGTGCCTCTTTCGCAGGAACTGGGACGATCCGGAGAGCCCCTCCGGGTTGTCCGAGAAGTTGCAACTATGTTGCGACGTGGAGGTTCTGGAAGATGATGGCCTGCCCACTAGTATCTGCCTCGAATGCGTGATGAAAGTCAACGTCGCCTACGAATTGAGGAAACAATGTCAGAAAGCAGACGTAGAACTCAGGAAGTTGTATGGGAAATCCTTGAAAACAAACATTGCCAGCATTCCTACAAAAgACCAGTGTTGTCAAACTGACCAATCTTTTATTTTGGATGCAATCAATTCGAGTGACAATATAGAGTTAAGTGCAGATAATGAAGTTAATATAGAGAAAAGAATCATACAATCGAATGTTATGAGACAAGAACAAATATCAGATGCTTTTGATCAAATCAAGCAGGAAGATAATTCAGTAGATAATGAAGTAGATTTAGACTGCGGTAGTAAGTATAAACAAATAGAACATGATAAAATAGCTAATAGAACGAGAAACGAGAATGGCTATAGAACGAGAAGATTGACTGTGTTTAAAAGAGTCACCTCTATAGAAAATTTGAGGAACTataaagagagacagagacgATACATCAAAAAGAGCGTAAACGTCAAACGCGACAGCAGCGATAACGAGTATCAAACAAAGGCGAGAAATGTCCACGGTAGGACGGACAAAGTGTCCGAAGTggaattgcaatataaatgtcaaaaatGTGATAGATTTTATTCCAGTAAAAAGTCCTTAGATAGACACACATCGACTCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGACAAATTGCACAAGCACATTAATCTGCACAGAACAAAGGAGAAGCCGAAACCGGTGTTATGTAAAATCTGCAACAAGAGTTTCAGAAAGATCGACACTATGGTCAGGCATCTGAATACTCACAAGAAGGCGTATCCTAAGGACGTTTTCTCTATACTGAAAGAGATACGGGACAAGAGAAGATTGGAAAATAATCCAGAGTCCTTCGAAACGTCGCTTACGCTGGAAGTAGCGCATGGACTGGAATTTCAAAGTGCAAATAACGGCAATACGAGAGAGCTACGAAAACGTAACAATACAAAAGTGGAATTAAGAGACTCGGATTTGGTAAACAGCGACTCCAGCAATGACAAGACAGAGTCTTTTGACGACCCATCGCTCTTCAACTGCAAACACTGTAGCAAGAGTTATCGTACCGAAAGATCGCTTCAACGTCATCTGCTAGTACACGACGAGAAGAAATATGTTTGCAACGTTTGCAACATGAAGTTCTTCCGACAAGATAGGCTGAAGAGCCACATGGATCGGTACGGTCACGACGAAACCAAGATTTGTTCGGAGCCGCAGAAACCGCCCGACGACAAATCGGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAATTGGATTCCGATAACGAGGGCAAGGGTTTCCCATGTAGAATTTGCGGAAAATCATACGACACGAAGAAGTCCTTGTTGAAACATCAAATGAATACGCACGGCGGACAAAACGAGTACTGTACGAGTTGCGGTACCGTGTGTAATTGCGCGTACAAGGATCAGGAGAAAGGCAACGAAAAGTCGAAACCGTACACCTGCGAGGAGTGTAACAAGTCGTTCGAGAAGGAGATCAAGCTGCACAAGCATCTGAGAATTCATGAGCGCGCCAAGGAGCAGCAAGACGCGAACTTCAAGCGTTTTCTATGCCACATATGCAGCAAGACGTTTCGGCAGAATACCGGCCTCATGTTCCACATGAGAACACACACGGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGCTTCACGTCCAACTCGAATTGCATCAATCATGAGAGAACTCACACGGGCGATCGGCCGTTTGTCTGTCAATACTGCAGCGCTGCGTTCGCCAAATCGTGCACCCTCAAGGCTCATATCACCACGCACACCGGCGAGGCGAATTATCATTGCAAGACCTGCGGCAAATCGTTCCGTCGGTTGAAGTACTTGAAGGAGCACAGATTTACGCACACAGGCGAGAAACCATACGCATGTAAGATCTGCGGCACCGCGTACAGCCATTCTGGCAGTTTATTCGTACACGAGAAGAAGTGCAAGGCGCAATTCAGTAATTATCAGTCGGGGGTTGTACAAAATGcacagcagcaacaacagatTTCCTACGGTCAATCCTCTCAGACCACTGGCGGCATTTCCGTAGCGTCCACTTCTTCGGTTGTCGCTCCTATCATCACTACGCTGCCTCAGGCAGCTCACTTAAACGTCATTAATAGTACTCTGAATATACAGGCGAACAAAGACTACGTGGATAACGTTCAGCGAATGAACACGCATGCGGCGACTAACGCAACCACAGTTGTCTCACCGGGTCTGCACCCGAATGTCGACATCTCCGAAATGAGTTCCGCCGTCAGGAACTTCTCCATCATCGGGCAGATGTTTCACACTTAG
Protein Sequence
MSISMQIDSGMLTNPDTSLCRVCLTVDHNNQCLFRRNWDDPESPSGLSEKLQLCCDVEVLEDDGLPTSICLECVMKVNVAYELRKQCQKADVELRKLYGKSLKTNIASIPTKDQCCQTDQSFILDAINSSDNIELSADNEVNIEKRIIQSNVMRQEQISDAFDQIKQEDNSVDNEVDLDCGSKYKQIEHDKIANRTRNENGYRTRRLTVFKRVTSIENLRNYKERQRRYIKKSVNVKRDSSDNEYQTKARNVHGRTDKVSEVELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHINLHRTKEKPKPVLCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRRLENNPESFETSLTLEVAHGLEFQSANNGNTRELRKRNNTKVELRDSDLVNSDSSNDKTESFDDPSLFNCKHCSKSYRTERSLQRHLLVHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKICSEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRICGKSYDTKKSLLKHQMNTHGGQNEYCTSCGTVCNCAYKDQEKGNEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQFSNYQSGVVQNAQQQQQISYGQSSQTTGGISVASTSSVVAPIITTLPQAAHLNVINSTLNIQANKDYVDNVQRMNTHAATNATTVVSPGLHPNVDISEMSSAVRNFSIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00765856;
90% Identity
iTF_00417792; iTF_00182147; iTF_00182789; iTF_00181490; iTF_01476447; iTF_01477099; iTF_01261987; iTF_00015563; iTF_00016208; iTF_00016850; iTF_00014906;
80% Identity
-