Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:3553782-3562177[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.8e-05 0.0043 16.7 4.3 1 23 264 286 264 286 0.99

2 12 0.41 26 4.8 6.4 1 23 291 313 291 313 0.98

3 12 7.8e-05 0.0049 16.5 1.4 3 23 324 344 323 344 0.99

4 12 1.7e-05 0.0011 18.6 5.2 1 23 435 457 435 457 0.98

5 12 0.0002 0.012 15.3 1.3 1 22 462 483 462 486 0.91

6 12 3.4e-06 0.00022 20.8 0.7 1 23 525 548 525 548 0.96

7 12 1.9e-05 0.0012 18.5 2.6 1 23 579 601 579 601 0.99

8 12 0.00016 0.0098 15.6 4.0 1 23 615 637 615 637 0.96

9 12 0.00015 0.0092 15.7 4.7 1 23 643 665 643 665 0.98

10 12 0.00023 0.014 15.1 1.4 1 23 671 693 671 693 0.98

11 12 4.4e-05 0.0028 17.3 6.5 1 23 699 721 699 721 0.98

12 12 0.00021 0.013 15.2 0.3 1 21 727 747 727 748 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.8e-05	0.0043	16.7	4.3	1	23	264	286	264	286	0.99
2	12	0.41	26	4.8	6.4	1	23	291	313	291	313	0.98
3	12	7.8e-05	0.0049	16.5	1.4	3	23	324	344	323	344	0.99
4	12	1.7e-05	0.0011	18.6	5.2	1	23	435	457	435	457	0.98
5	12	0.0002	0.012	15.3	1.3	1	22	462	483	462	486	0.91
6	12	3.4e-06	0.00022	20.8	0.7	1	23	525	548	525	548	0.96
7	12	1.9e-05	0.0012	18.5	2.6	1	23	579	601	579	601	0.99
8	12	0.00016	0.0098	15.6	4.0	1	23	615	637	615	637	0.96
9	12	0.00015	0.0092	15.7	4.7	1	23	643	665	643	665	0.98
10	12	0.00023	0.014	15.1	1.4	1	23	671	693	671	693	0.98
11	12	4.4e-05	0.0028	17.3	6.5	1	23	699	721	699	721	0.98
12	12	0.00021	0.013	15.2	0.3	1	21	727	747	727	748	0.93

Sequence Information

Coding Sequence: ATGTCGGTCTCCATGCAGATTGACAGCAGCATGTTGACGAATTCAGATACCAGCCTCTGTCGCGTCTGCCTGACCGTGGATCACAACAATCAGTGTATCTTCCGCAGGAACTGGGACGATCCGAGGAGCCCATCCGGGTTGCCCGAGAAGTTGCAGCTATGCTGCGGCGTGGAGATTCTGGAAGATGATGGTCTGCCGACTAGTATCTGCCTCGAATGCGTAGTGAAAGTCAACGTTGCCTATGAATTGAGGAAACAATGTCAAAAAGCAGACATAGAACTCAGGAAGTTATATGGGAAATCCTTAAAAACAAACATTGCCAGCATTCCAACAAAAGACCAGTGTTGTCAAACTGACCAATTTTTTATCTTGGATGCAATCAATTCGAGTGACAATATAGAGTTAAGTGCAGATAATGAAGTTAATATAGAGAAAAGCATTATGCAATCAAATGTTATGAGACAAGAACAAATACTAGATGCTTTTGATCAAATCAAGCAGGATGTTTCAGTAGACAATGAAGTAGATCTAGACTGTGGTAGTAAATATAAACAAGTAGAACATGACAAAATAGCTAATAGAATGAGAAACGAAAATAGCTATAGAACGAGaagattaatgtttaaaaggGTTACGTCTATAGAAAATTTGAGGAATTataaagagagacagagacgaTACATCAAAAAGAGCGTAAACGTCAAACGTGACAGCAGCGATAGCGAGTATCAAACAAAGACGAAAAATGTTCACGGCAGGATGGACAGAGCGTCCGAAGTGGAACTGCaatataaatgtcaaaaatgTGATAGATTTTATTCCAGTAAAAAGTCCTTAGATAGACACACATCAACTCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGATAAATTGCATAAGCATATTAATCTGCACAGAGCAAAGGAGAAGCCGAAACCGGTGTTATGCAAAATCTGCAACAAGAGTTTCAGAAAGATCGATACTATGGTCAGACATCTGAATACTCATAAGAAGGCATATCCTAAGGATGTTTTCTCTATACTGAAGGAGATACGGGACAAGAGAAGATTGGAAAATAATCCAGAGTCTTTCGAAACGTCGCTCACGCTGGATGAGGACGAAGAAGTAATGCGTGATGGACAATTTCAAAGTGCAAACAATGGCAATACGAGAGAACTACGAAAACGTAACAATACAAAAGTGGAACTAAGAGACTCGGATTTGGTAAACAGTGACTCCAGCGATGACAAAACAGAGTTTTTCGACGACGCGTCACTCTTCAACTGCAAACATTGTAGCAAGAGTTATCGTACCGAAAGATCGCTTCAACGTCATCTGCTGACACACGATGAGAAGAAATATGTCTGCAATGTTTGCAACATGAAGTTCTTCCGACAGGATAGGCTGAAGAGTCACATGGATCGGTATGGTCACGATGAAACCAAGATGTGTTCGGAGCCGCAGAAACCGCCTGACGACAAGTCTGCCATCAAGCTGATAAACACCTGGATAAGAGAGGAATTGGATTCCGATAACGAGGGCAAGGGTTTCCCGTGTAGAATCTGCGGAAAATCATACGACACGAAGAAGTCCTTGTTGAAACATCAAATGAACGCGCACAGCGGACAGAACGACTATTGCACGAATTGCGGTACCGTGTGTAATTGCGTGTACAAGGATCAGGAGAAAGGCAACGAAAAGTCAAAGCCGTATACTTGCGAGGAATGTAACAAGTCGTTTGAGAAGGAGATCAAGTTGCACAAGCATCTGAGAATTCATGAGCGCGCCAAGGAGCAGCAGGACGCGAACTTCAAGCGTTTTCTATGCCACATATGCAGCAAGACGTTTCGACAGAATACCGGCCTCATGTTCCACATGAGAACACATACGGGTTACAAGCCGCACGTGTGTAAGTACTGCGGCCGTGGCTTCACATCTAATTCGAATTGCATCAATCATGAGAGGACTCACACGGGCGATCGGCCGTTCGTCTGTCAATACTGCAGCGCTGCTTTCGCCAAATCGTGCACCCTCAAGGCTCACATCACCACGCACACCGGCGAGGCGAATTATCATTGCAAAACCTGCGGCAAATCGTTCCGTCGGTTGAAGTACTTGAAGGAGCATCGATTCACGCATACAGGCGAGAAACCGTACGCGTGTAAGATCTGCGGCACCGCATACAGCCATTCTGGCAGTTTATTCGTACACGAGAAGAAGTGCAAGGCGCAATTCAGTAATTATCAGTCGGGGGTTGTACAAAATGtacagcagcaacaacaggTTTCCTACAGTCAATCCTCTCAGACCACTGGCGGCATTTCCGTGGCGTCCACTTCTTCGGTTGTCGCTCCTATCATCACTACGCTGCCTCAGGCTCACCTAAACGTAATTAACAGTACTCTAAATGTACAGGCGAACAAAGACTACGTGGATAACGTTCAGCGAATGAACGCGCATGCATCGACTAACGCAACCACAGTTGTCTCACCAGGTCTGCATCCGAATGTTGACATCTCCGAAATGAGTTCCGCCGTTAGGAACTTCTCCATCATCGGGCAGATcaatatgCCTTCATACAAGCTGATTTACTTTCCCATCACGGCATTGGCCGAGCCAATTCGTTTCCTGCTCAGTTATGCTGGCATCGAGTTTGAGGATGAACGTTTTGATAGGAATGATTGGCCAAAACTTAAGCCGACTATGCCATTCGGTAAAGTACCCGTACTCGAAGTAGATGGAAAGAAAATCGATCAGTCCACAGCTATCTCCCGTTATTTGGCGAAACAATGTGGTCTTGCTGGCAAAAACGATTGGGAGTCTTTGGAAATAGACTCGACTGTCGACACTATCCATGATGTACGCGCCAGTATCGCTAGTTTCCACTACGAGAGCAATGAAACAGCTAAAAATGAGAAACTTAAAGTTGCCAAGGAAACAACAGTGCCATATTATTTGGAGCGTTTAGACGCACAGGTGAAGAAGAATGGCGGTTATTTTGTCGGTGGTTCTTTGACGTGGGCCGATTTAGTTTTCGTCGGTCTTTTGgattatttgaatttcatgATGAAGGAGGACATCGTTGAGAAGTATGAGAATCTGAAACAACTCCAAAAGACAGTCGAGGAAGTACCGGCTATCAAAACCTGGATCGAGAAACGTCCGCCAGCGATCTTTTCGAATTAA
Protein Sequence: MSVSMQIDSSMLTNSDTSLCRVCLTVDHNNQCIFRRNWDDPRSPSGLPEKLQLCCGVEILEDDGLPTSICLECVVKVNVAYELRKQCQKADIELRKLYGKSLKTNIASIPTKDQCCQTDQFFILDAINSSDNIELSADNEVNIEKSIMQSNVMRQEQILDAFDQIKQDVSVDNEVDLDCGSKYKQVEHDKIANRMRNENSYRTRRLMFKRVTSIENLRNYKERQRRYIKKSVNVKRDSSDSEYQTKTKNVHGRMDRASEVELQYKCQKCDRFYSSKKSLDRHTSTHNDKEFKCDSCDKQFFCLDKLHKHINLHRAKEKPKPVLCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRRLENNPESFETSLTLDEDEEVMRDGQFQSANNGNTRELRKRNNTKVELRDSDLVNSDSSDDKTEFFDDASLFNCKHCSKSYRTERSLQRHLLTHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKMCSEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRICGKSYDTKKSLLKHQMNAHSGQNDYCTNCGTVCNCVYKDQEKGNEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQFSNYQSGVVQNVQQQQQVSYSQSSQTTGGISVASTSSVVAPIITTLPQAHLNVINSTLNVQANKDYVDNVQRMNAHASTNATTVVSPGLHPNVDISEMSSAVRNFSIIGQINMPSYKLIYFPITALAEPIRFLLSYAGIEFEDERFDRNDWPKLKPTMPFGKVPVLEVDGKKIDQSTAISRYLAKQCGLAGKNDWESLEIDSTVDTIHDVRASIASFHYESNETAKNEKLKVAKETTVPYYLERLDAQVKKNGGYFVGGSLTWADLVFVGLLDYLNFMMKEDIVEKYENLKQLQKTVEEVPAIKTWIEKRPPAIFSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00765856;
90% Identity: iTF_01477813;
80% Identity: -