Acep001581.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Atta cephalotes
Gene Symbol
-
Assembly
GCA_000143395.2
Location
NW:6095479-6098411[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 3.5e-05 0.002 17.7 3.9 1 23 264 286 264 286 0.99
2 12 0.34 19 5.2 6.4 1 23 291 313 291 313 0.98
3 12 6.4e-05 0.0037 16.9 1.4 3 23 324 344 323 344 0.99
4 12 1.9e-05 0.0011 18.5 4.2 1 23 435 457 435 457 0.97
5 12 0.00016 0.0093 15.6 1.3 1 22 462 483 462 486 0.91
6 12 3e-06 0.00017 21.0 0.8 1 23 525 548 525 548 0.96
7 12 1.5e-05 0.00088 18.8 2.6 1 23 579 601 579 601 0.99
8 12 0.00013 0.0074 15.9 4.0 1 23 615 637 615 637 0.96
9 12 0.00012 0.0069 16.0 4.7 1 23 643 665 643 665 0.98
10 12 0.00019 0.011 15.4 1.4 1 23 671 693 671 693 0.98
11 12 3.7e-05 0.0021 17.6 6.5 1 23 699 721 699 721 0.98
12 12 0.00017 0.0098 15.5 0.3 1 21 727 747 727 748 0.93

Sequence Information

Coding Sequence
ATGTCGGTCTCCATGCAGATTGACAGCGGCATGTTGACGAATCCAGATACCAGTCTCTGCCGCGTCTGCCTGACTGTGGATCACAACAACCAATGCATCTTCCGCAGGAACTGGGACGATTCGGAGAGTCCATCCGGATTGTCCGAGAAGTTGCAGCTATGCTGCGGCGTGGAGGTTCTGGAAGACGATGGCCTGCCGACTAGTATCTGCCTCGAATGCGTGATGAAAGTCAACGTCGCCTACGAATTGAGGAAACAATGTCAAAAAGCAGATGTAGAACTCAGGAAGTTGTATGGGAAATCCTTGAAAACAAACATTGCTACCATTCCAACAAAAGACCAGTGTTGTCAAACTGACCAATCATTTATCTTGGATGCAATCAATTTGTGTGACAATATAGAGTTAAGTGCAGATAACAAAGTTAATATACAGAAAAGCATAATGCAATCAAATGTTATGAGACAAGAACAAATACCAGATGCTTTTGATCAAATCAAGCAGGATGTTTCAGAAGACAATGAAGTAGATCTAGACTgtgtaagtaaatataaacaagTAGAACATGACAAAATAGCTAATAGAACGAGAAACGAGAATAGCTATAGAACAAGaagaataatgtttaaaaggGTCACATCTATAGAAAATTTGAGGAATTataaagagagacagagacgATACATCAAAAAGAACGTAAACGTCAAACGTGACAACAGCGATAGCGAATATCAAACGAAGGCGAGAAATGTTCACGGCAGGATGGACAGAGTATCCGAAGTGgaattgcaatataaatgtcaaaaatgtGATAGATTTTATTCCAGTAAAAAGTCCTTAGATAGACACACATTGACTCATAACGATAAAGAGTTCAAATGCGATAGCTGTGATAAGCAATTCTTCTGTCTGGATAAATTGCATAAGCACATTAATCTGCACAGAGCGAAGGAAAAGCCGAAACCGGTGTTATGCAAAATCTGCAACAAGAGTTTCAGAAAAATCGATACTATGGTCAGGCATCTGAATACTCACAAGAAGGCATATCCTAAGGATGTTTTCTCTATATTGAAGGAGATACGGGACAAgagaaaattggaaaataatcCAGAGTCTTTCGAAACGTCGCTCATGTTGGACGAGGACGAAGAAGTAGCGCATGATGGACAATTTCAAAGTGCAAATAACGGTAATACGAGAGAGCTACGAAAACGTAACAATACAAAAGTAGAACTAAGAGATTCGGATTTGGTAAACAGCGATTCCAGTAATGACAAGACAGAGTCTTTCGACGACGCGTCGCTCTTCAACTGCAAACACTGTAGCAAGAGTTATCGTACCGAAAGGTCTCTTCAACGTCATCTGTTGATACACGATGAGAAGAAATACGTCTGCAATGTTTGCAACATGAAGTTCTTCCGACAGGATAGGTTGAAGAGTCACATGGATCGGTATGGTCACGATGAAACCAAAATGTGTTCGGAGCCGCAGAAACCGCCTGACGACAAGTCGGCCATCAAACTGATAAACACCTGGATAAGAGAGGAATTGGATTCCGATAATGAGGGTAAAGGTTTCCCATGTAGAATCTGCGGAAAATCATACGACACGAAGAAGTCCTTGTTGAAACATCAAATGAACGTGCACGGTGGACAGAACGAGTACTGCACGAGATGCGGTACCGTGTGTAATTGCGCGTACAAGGATCAGGAGAAAAGCAACGAAAAATCAAAGCCGTACACCTGCGAGGAGTGTAATAAGTCGTTTGAGAAGGAGATCAAGCTGCACAAGCATCTGAGAATTCATGAGCGCGCCAAGGAGCAGCAGGATGCGAATTTCAAGCGTTTCCTATGCCACATATGCAGCAAGACGTTTCGGCAGAATACCGGCCTCATGTTCCACATGAGAACACATACAGGTTACAAGCCGCACGTGTGCAAGTACTGCGGCCGTGGCTTCACGTCCAACTCGAATTGCATCAATCATGAGAGGACTCATACGGGCGATCGACCGTTCGTCTGTCAATACTGTAGCGCCGCTTTCGCCAAATCGTGTACTCTCAAGGCTCACATCACCACGCACACCGGCGAGGCGAATTATCATTGCAAGACCTGCGGCAAATCGTTCCGTCGATTGAAGTACTTGAAGGAGCACAGATTCACGCATACAGGCGAGAAACCGTACGCATGTAAAATCTGCGGCACCGCATATAGTCATTCTGGCAGTTTATTCGTACACGAGAAGAAATGCAAAGCGCAATTCAGTAATTATCAGTCGGGGGTTGTACAAAATGCACAGCAACAACAGATTTCTTACAATCAATCTCCTCAGACCACTGGCGGCATTTCCGTGGCGTCCACTTCTTCGGTTGTCGCTCCTATCATCACTACGCTGCCTCAGGCTCACCTAAACGTAATTAACAGTACTCTGAATGTACAGCCGAACAAAGACTACGTGGATAATGTTCAGCGAATGAATGCGCATGCAGCAACTAACGCAACCACAGTTGTCTCACCAGGTCTGCATCCGAATGTTGATATCTCCGAAATGAGTTCCGCCGTGAGGAACTTCTCTATCATCGGGCAGATGTTTCACACTTAG
Protein Sequence
MSVSMQIDSGMLTNPDTSLCRVCLTVDHNNQCIFRRNWDDSESPSGLSEKLQLCCGVEVLEDDGLPTSICLECVMKVNVAYELRKQCQKADVELRKLYGKSLKTNIATIPTKDQCCQTDQSFILDAINLCDNIELSADNKVNIQKSIMQSNVMRQEQIPDAFDQIKQDVSEDNEVDLDCVSKYKQVEHDKIANRTRNENSYRTRRIMFKRVTSIENLRNYKERQRRYIKKNVNVKRDNSDSEYQTKARNVHGRMDRVSEVELQYKCQKCDRFYSSKKSLDRHTLTHNDKEFKCDSCDKQFFCLDKLHKHINLHRAKEKPKPVLCKICNKSFRKIDTMVRHLNTHKKAYPKDVFSILKEIRDKRKLENNPESFETSLMLDEDEEVAHDGQFQSANNGNTRELRKRNNTKVELRDSDLVNSDSSNDKTESFDDASLFNCKHCSKSYRTERSLQRHLLIHDEKKYVCNVCNMKFFRQDRLKSHMDRYGHDETKMCSEPQKPPDDKSAIKLINTWIREELDSDNEGKGFPCRICGKSYDTKKSLLKHQMNVHGGQNEYCTRCGTVCNCAYKDQEKSNEKSKPYTCEECNKSFEKEIKLHKHLRIHERAKEQQDANFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCQYCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQFSNYQSGVVQNAQQQQISYNQSPQTTGGISVASTSSVVAPIITTLPQAHLNVINSTLNVQPNKDYVDNVQRMNAHAATNATTVVSPGLHPNVDISEMSSAVRNFSIIGQMFHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00765856;
90% Identity
iTF_01477813;
80% Identity
-