Basic Information

Insect: Trachymyrmex septentrionalis
Gene Symbol: -
Assembly: GCA_001594115.1
Location: NW:17059-45394[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 7 4.4e+02 0.9 0.2 4 14 63 73 62 75 0.89

2 18 1.4 86 3.2 4.6 1 20 170 189 170 191 0.92

3 18 0.71 45 4.1 0.4 2 17 199 214 198 215 0.87

4 18 0.021 1.3 8.9 4.8 1 23 232 255 232 255 0.92

5 18 0.0059 0.38 10.6 1.1 1 23 620 643 620 643 0.94

6 18 0.53 34 4.5 0.7 5 23 650 669 649 669 0.94

7 18 0.26 16 5.5 0.8 2 23 675 696 674 696 0.97

8 18 9.8e-06 0.00062 19.4 0.1 1 21 875 895 875 896 0.96

9 18 0.00034 0.021 14.5 0.1 3 23 904 925 902 925 0.92

10 18 0.31 20 5.2 7.0 1 23 935 958 935 958 0.94

11 18 0.2 13 5.8 0.2 2 21 986 1005 985 1006 0.91

12 18 0.49 31 4.6 7.7 1 23 1047 1070 1047 1070 0.91

13 18 0.27 17 5.4 1.5 1 19 1118 1136 1118 1138 0.93

14 18 0.044 2.8 7.9 7.1 1 23 1146 1169 1146 1169 0.96

15 18 3.6 2.3e+02 1.9 5.5 1 23 1178 1201 1178 1201 0.88

16 18 0.0018 0.12 12.2 0.6 1 23 1243 1266 1243 1266 0.93

17 18 0.23 15 5.6 0.4 1 23 1531 1554 1531 1554 0.95

18 18 0.0085 0.54 10.1 1.5 2 23 1581 1603 1580 1603 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	7	4.4e+02	0.9	0.2	4	14	63	73	62	75	0.89
2	18	1.4	86	3.2	4.6	1	20	170	189	170	191	0.92
3	18	0.71	45	4.1	0.4	2	17	199	214	198	215	0.87
4	18	0.021	1.3	8.9	4.8	1	23	232	255	232	255	0.92
5	18	0.0059	0.38	10.6	1.1	1	23	620	643	620	643	0.94
6	18	0.53	34	4.5	0.7	5	23	650	669	649	669	0.94
7	18	0.26	16	5.5	0.8	2	23	675	696	674	696	0.97
8	18	9.8e-06	0.00062	19.4	0.1	1	21	875	895	875	896	0.96
9	18	0.00034	0.021	14.5	0.1	3	23	904	925	902	925	0.92
10	18	0.31	20	5.2	7.0	1	23	935	958	935	958	0.94
11	18	0.2	13	5.8	0.2	2	21	986	1005	985	1006	0.91
12	18	0.49	31	4.6	7.7	1	23	1047	1070	1047	1070	0.91
13	18	0.27	17	5.4	1.5	1	19	1118	1136	1118	1138	0.93
14	18	0.044	2.8	7.9	7.1	1	23	1146	1169	1146	1169	0.96
15	18	3.6	2.3e+02	1.9	5.5	1	23	1178	1201	1178	1201	0.88
16	18	0.0018	0.12	12.2	0.6	1	23	1243	1266	1243	1266	0.93
17	18	0.23	15	5.6	0.4	1	23	1531	1554	1531	1554	0.95
18	18	0.0085	0.54	10.1	1.5	2	23	1581	1603	1580	1603	0.95

Sequence Information

Coding Sequence: ATGGCTCGAGTTCAACCATATGAAAGAGTTGTGGACGctgtaattatacatacaaatcCAACAcTTGGTATAGAAATCCATAATGGGACGAAGATTAAGGAAGAGCCTGTCGATACAACATCGAATACAATTGAATATGATACTCCTATagttagaaattattatagtttaattgATCATGATCATCATTATTGCGACAAATCATTATCTAATAAGTCATATAAAAGCATAAATAACACAGGAAACGGACATTCATCGAATGCACATACAAACGACGTAACTAATACTGTTAATACAGATcgtgaaaatgtaaaaacaaagaaagaaatagataaTACCTTACCACGTTTTAAGAAACGAAAATATTCCAATGAAATctttagtaataaaaacaCTAGTACACTATGTTCAGTAACCAAAAATgttaagagaaaaagaaaacaaaaaagcattacattagattataaaaaaaaaatacaatgtaagaataaattagtaaaaaaggAATTTACATGTGACATATGTTTTAGGAAATTCAGTTGTCTTTCACATTGGAAAATCCATAAACAATATTACGAACTTGATAAAAGGAATAAGTGTAaggtttgtaataaatatttcatagctAACGACAAATTACAGTCTGATACGTGTCATTGCGTACATAGCATGCGTAGTACATACTTATCTTCatacaattgtaatttttgcagTCGtacttttaagaaaaaattgcttttacaATCTCACTTATTTCATGTACATAATGagttaatatgttttaataacacTGTTAAACGTGAGACTTCCAAATCCAAGatctttaaagtaaataaatctcctgaaaatgatattttaataactagtGCAAGTGAAAACTCATTATGTTCAAATAATCTTGTTCAATCAGGAAAGATAAATACTacgcttataaataaatctcgtAACGATGATGTGATTAATACTGAGAAATCAAGAAccgaaaaattattcaataacgAAGTGTCGCCAACTAAAAGATTACGACAACCAACATTAACGGAATATCTTGagctttgcaaaaaaaaacgcaatattaaatttagtcCAAGTAAATTGAACATTACAAAAGATGATTTTCCTACGTGTGCTTTACATCGTgatgatcaaataaaaaaacttccaGTAGAACAAAATGGACAAATTGATCTTTTATCTACACAATCAGATAATCTTCTAAAACGAACAGTACGTTCTATTCAGAAACAAAGTATGAAACATGAAATGCATAAAAAGCCATTTGTAAAACTACATGCAGATGTTGAAATGATGAAGTCTTTTCTAGAAAAACTTTCTGATACGGTtgtcgaaaataaaataaccaaAGATGGAAccagtaatattatttcatatgatCGTGGAATACCTTACAGTTTACGATCTTTAAATGGAATTTCTTCCATGGAAGCAAGTGCAAATTTAGGAATgaggaagaacaaaaatgtatctaaGAAGTCTCGATTTGGtacagaatttaatattaaaaataaagaaaacggGGTTTTAAAGCAAAcgattaatttagaaaagatAACTTCTAAAGTGgattggaaaattattatggcttattttaaatgcaaggagtgtacaatttttttaacaagatgTGATGAACAACCAAGAAATTCTTATCAAATTTCTGCTCTTAAAACCAAGAAAAACACTTGTCTTACTTCTGGATGCAACTTTCAAGAAAGTGATGTACGAAATGAAGTGAAGCTAAAAGACGTAGAGGTTTCTTTGGAACGTTTAACAGTTGTTCCAActgtacatataaaagaaaaaacaccGGATGTTGAGAAAcacaataacaattattttttgtgtaaagtTTGTAAGGAGagtttttcttcaaaattggCCAAACGTATACATATTAAGTCGTCTCATATAGCATATATGTCAAGCATATGTGGTGCACGTTATAAGTTGAAGCATAAATTACTTCAACATTATCTACGCGAACATGTTTCTAAACAAAATCAATGTTGTATTTGTTATATGCTATTATCTGATTATGAAGCGTTGAAGCAACACTTAAATGTTCATTGTCTGAAGTATATTCAACGACAGGatgatcaatatttaatagatacTGAATTAGAATGCAACTTGACCAAAAAATCTAAGTATCTTCGTGACGAGACATTCTTGTCACGAACATCTTTGAAGGAACATCAAAGTCATTGTACagtacaaaaagaaatagaagaagaTCAGAAAGATTCCATGGAAGAAGCAAATTCATCCCCAAAGGATATTTCTGAAGTACAACATGAGAAGCCCGATGATATAGTTGACATAATATGTcacgaaaaaattaatctggATGATTTATGTAATCCATTAAATAGCGACtgtgtaaaaaaatcgaatgaACATCAAATATCGTTTCataaaaaagaacaagaaaTCAATGAAGCTAATCAAAACATTcttgttaataataacttaattaagGACAAAATAGGAACTATTAACGAATCGCAACACCCTAAAAAgcttttggaaaataattccACAATTAGTAATCAAGATGTCGCGAATACACAATTGAATAACATTGCAACAAAGAATGGAACTTATCCGTGCAATATATGTGGAAAGCAATTTCAAACTCCCAAGAATTTGGAAATACATGTACGCAATTTTAGCTTTACCCCTGATATTTGTCCATTGTGTGGCACTGGATTTAGTTCTAAACGTTTTTTACAGTCACATATTACTGCAGCGCATGTACcacatatttcaaaaacttacaattttcattgtgTATTCTGTAACCaaggtttttttaaaaaacacgATCTTCGGTCTCATATATTACACTTACATGGTCAACAAGTACTCAATACGCTCACATGCAATCCTAATATAAATCAAGAGAAATCCAACAAATCAGTTACCCGTAGCACAGTATGTAACGTTTGTAATTTGGTATTTGAAACTCATGATCGCTATGTTGAGCATCGAAtgtactattataaaaatcatacatTTAGATGCTCACTCTGTGAACAAAACTTTCAAGGAATGTACATGTTTCATCATCATAACAAACTTACACATTGTCCAGAAGATAAACGCAAATCATACAATCACATCTGCGAGATATGCCATGAGGGATTCAATCATGAGTCACATTTTTATTCGCATAATATGCATGTGCATTCGAATGAAGTGAATTTAGGTGAAACTGCAAAAGAATCTAAAGAAGATACCAAGAATAGAAGCCGGGATTCATCCAACGTCCAGAAACAGATTAGAAATTGTTCTACGGATCAAGAAAACCAAAATGATCAATCCAATGAGTATACTTGCCAAATTTGTCAGATGAAATGTAGAAATATGGATCATATGGTAATGcacaaagaattttattctaatgaGGGAGATTTTAAATGTGACAAGTGTAATAGACGATGCAAAACATTTGATTTTCTTAACCAACATAAGAAATTAACTCACTCTTGTCGAGATGTTTATAATGGACATATGTGTCATATTTGTGGCGAAGTTTTGGAAACAAGTATTTCATTGAAATGTCACGAAAAACACTTCCACTCAAATATTATCAGCAATAATACGGATAATTGGAAGAATCCAGAAGAATTGAGTAATCagttattatctttaaatataatatatccagGTAAATCTAAAAACAATACATGTAATGTAACTGAATACAAATGCTTATTTTGTGATATGAAGTTCTCTACTCCTAACACTGTCCAAACACATATTGTTTATGTTCATATGAATGATATGATAGCTGAACGAGCTACTTTAAAACTTGCTCTTCCCATTACTAATAACAATAGCATTCAGAAACAATTTGAAATTGGTCAAATACCATCAATATCGTCAATGTCATCTTCATCTTCATCATcgtcattatcatcatcatcatcatcatcatcaactGAAAGTAAGTTAGCTAAACTTCTTCAAAGATCGACGATTCAACAATCTAATAACATCGAAAGTACTAtggctaaaaataaaactgttgaattatttaagaactTCAGAACTATATAtccaaaaaatacaattacagAGAAAACTTCAAATCCATGTATTAACAAATCTAATGATAGTATTTCGACGTGTAGTATTATTGCATTAAATACGGAATCAAAAACAGATATTCCAGTTTCTCCATCCGTTGCAACAACTTCTAGGATTGTTGCATCAAATACTGAAGTTGGAAACAATGCTTCAGTTTTTCTATCCACTGGATCgatatttaaaactatatcCAATACTGAATCTAAAGATAACATTTCAATTTCTCTACCTGGATCAACCAACAATCTccgaaaatattatgaaattccTTTAAAATCTGGTTCGACCAATGAGTTTAAAACTAATTCATTAGCTAAGggatctataataattaataaatccaaAACAGTACCTGCATATCTTTTACCAACTAAACCCCTATCAACATTCAAACGTATTATGCCAAAACCTTGGAAAAGCAATGAAATTACGAATcaaaaatctgaatcagtgaacAATTACGCCACTGGTCATAGTTATTCATGCCCATTATGTCCGCTAGAATACCCATCTTTGCTGTTCTTCCATGCACATCTCAAATATGCTCATGCAGATTCCATCGTTTCCATTGGAACTGATGAATTGACTGTCCCACAGGTGAATAAATCTCAGAAAGCCTCTATGATAGAATGTTTATTGTGTCCATGTACCTTCCCTGACGAAACCAAGTATAAGAAGCATTTGAGAAATTCTCATACATATTATGTGTATATCCCAAATTCTCAAGAGATGACGAAAATTAATAACGTGCGTAATCCTCTAACGCAGACAAACGTTAACAGAAAAAGCACAGTTCCTGAAACAATTACTATAGATGATGATGATCATGATAACGTCAAGAATACATCAGATCAAGGAACAGTCGAAGTTACAACGCTCAATTACAAAGAACAGAATGAGAAAATTGGTAAATTAAGAGTGAAGCCTCTTGCAAAgatcattgaaaatttatctatgGATTCTGCATCGAAACTCCTATAG
Protein Sequence: MARVQPYERVVDAVIIHTNPTLGIEIHNGTKIKEEPVDTTSNTIEYDTPIVRNYYSLIDHDHHYCDKSLSNKSYKSINNTGNGHSSNAHTNDVTNTVNTDRENVKTKKEIDNTLPRFKKRKYSNEIFSNKNTSTLCSVTKNVKRKRKQKSITLDYKKKIQCKNKLVKKEFTCDICFRKFSCLSHWKIHKQYYELDKRNKCKVCNKYFIANDKLQSDTCHCVHSMRSTYLSSYNCNFCSRTFKKKLLLQSHLFHVHNELICFNNTVKRETSKSKIFKVNKSPENDILITSASENSLCSNNLVQSGKINTTLINKSRNDDVINTEKSRTEKLFNNEVSPTKRLRQPTLTEYLELCKKKRNIKFSPSKLNITKDDFPTCALHRDDQIKKLPVEQNGQIDLLSTQSDNLLKRTVRSIQKQSMKHEMHKKPFVKLHADVEMMKSFLEKLSDTVVENKITKDGTSNIISYDRGIPYSLRSLNGISSMEASANLGMRKNKNVSKKSRFGTEFNIKNKENGVLKQTINLEKITSKVDWKIIMAYFKCKECTIFLTRCDEQPRNSYQISALKTKKNTCLTSGCNFQESDVRNEVKLKDVEVSLERLTVVPTVHIKEKTPDVEKHNNNYFLCKVCKESFSSKLAKRIHIKSSHIAYMSSICGARYKLKHKLLQHYLREHVSKQNQCCICYMLLSDYEALKQHLNVHCLKYIQRQDDQYLIDTELECNLTKKSKYLRDETFLSRTSLKEHQSHCTVQKEIEEDQKDSMEEANSSPKDISEVQHEKPDDIVDIICHEKINLDDLCNPLNSDCVKKSNEHQISFHKKEQEINEANQNILVNNNLIKDKIGTINESQHPKKLLENNSTISNQDVANTQLNNIATKNGTYPCNICGKQFQTPKNLEIHVRNFSFTPDICPLCGTGFSSKRFLQSHITAAHVPHISKTYNFHCVFCNQGFFKKHDLRSHILHLHGQQVLNTLTCNPNINQEKSNKSVTRSTVCNVCNLVFETHDRYVEHRMYYYKNHTFRCSLCEQNFQGMYMFHHHNKLTHCPEDKRKSYNHICEICHEGFNHESHFYSHNMHVHSNEVNLGETAKESKEDTKNRSRDSSNVQKQIRNCSTDQENQNDQSNEYTCQICQMKCRNMDHMVMHKEFYSNEGDFKCDKCNRRCKTFDFLNQHKKLTHSCRDVYNGHMCHICGEVLETSISLKCHEKHFHSNIISNNTDNWKNPEELSNQLLSLNIIYPGKSKNNTCNVTEYKCLFCDMKFSTPNTVQTHIVYVHMNDMIAERATLKLALPITNNNSIQKQFEIGQIPSISSMSSSSSSSSLSSSSSSSSTESKLAKLLQRSTIQQSNNIESTMAKNKTVELFKNFRTIYPKNTITEKTSNPCINKSNDSISTCSIIALNTESKTDIPVSPSVATTSRIVASNTEVGNNASVFLSTGSIFKTISNTESKDNISISLPGSTNNLRKYYEIPLKSGSTNEFKTNSLAKGSIIINKSKTVPAYLLPTKPLSTFKRIMPKPWKSNEITNQKSESVNNYATGHSYSCPLCPLEYPSLLFFHAHLKYAHADSIVSIGTDELTVPQVNKSQKASMIECLLCPCTFPDETKYKKHLRNSHTYYVYIPNSQEMTKINNVRNPLTQTNVNRKSTVPETITIDDDDHDNVKNTSDQGTVEVTTLNYKEQNEKIGKLRVKPLAKIIENLSMDSASKLL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01477929;
90% Identity: iTF_00015709;
80% Identity: -