Tsep001050.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex septentrionalis
Gene Symbol
-
Assembly
GCA_001594115.1
Location
NW:787088-796484[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0003 0.019 14.7 4.1 1 23 239 261 239 261 0.97
2 11 9.2e-06 0.00058 19.4 1.5 1 23 267 289 267 289 0.98
3 11 0.00046 0.029 14.1 3.6 1 23 295 318 295 318 0.95
4 11 0.0092 0.58 10.0 5.2 1 21 324 344 324 346 0.95
5 11 9.2e-05 0.0058 16.3 1.9 1 23 352 374 352 374 0.99
6 11 5.3e-05 0.0033 17.1 0.8 1 23 380 402 380 402 0.98
7 11 0.00048 0.03 14.0 0.8 1 23 410 433 410 433 0.97
8 11 2.5e-05 0.0016 18.1 2.6 2 23 440 461 439 461 0.97
9 11 9.2e-05 0.0058 16.3 0.3 1 23 467 489 467 489 0.99
10 11 0.0025 0.16 11.8 7.3 1 19 495 513 495 518 0.91
11 11 8.1e-08 5.1e-06 25.9 1.3 1 23 532 554 532 554 0.98

Sequence Information

Coding Sequence
ATGAGTAACGTAGCTGCTATAAAATTGGAAGAGGGACAAGAATCTGTCACCGAGATACAAACTTACTTGGAGACATTTAATAAAGAGATTGAGGGTGGACAAGGTGAACAGCTGCAACATGTACAATtgcaACAAGTGGAAGGATTATCTGGTGGCGAAGAGGGTGGGACATACTTTGTTGATCAGTCTGGTCAATATTATTACCAGGCAAATAGTGACGAACCGCCTGTAATGACACAGGTACAAATACAGGAGGTAGAAGAAACCGATGTACAAAACGAAGGTGATGCAACTCAAGATGAACAATTTCAAGAGATCGAAGAACTTGAAAATGCTGAAGGTGATGAAGATGGACAAGTCAACGGTGAAAACAATCAAGTTGTAATTAACTCTGGCGATGCATATCAAACTGTCACGATTGTACCATCCGATACAAATCCTGGAGAAGTTAGTTACgttttgatagttcaacaacCTGAAAccgaagagaaagaaagtaaatCTACAGAAGATGATGCAACGACAGTGGCAGTAGCAGcagctgctgctgctgcacCAGCTGAAGGAGAAGAAGCAGAAGGTGAACAAGATCTCACTGTATATGATTTTGAAGACAATGAAGATAATGAGGCTCCAGTTGAATCTGAGACAGAAGATGacaaaactaaaattattaagttccTCCCAAAGAAATCTCAAACCGTAACTCAAGCTCATATGTGCAACTACTGCAACTATACTAGCCCAAAACGaTACCTTTTGTCACGACATATGAAATCGCACTCAGAAGAAAGACCACATAAATGTAGTGTTTGTGAACGAGGATTTAAAACGCTAGCTTCACTTCAGAATCATGTTAACACTCATACTGGGACCAAACCTCATCATTGCAAATATTGCGAGAGTGCATTTACAACTTCTGGTGAACTTGTAAGACATGTTCGCTACAGACACACCCATGAAAAACCACATAAATGTCATGAGTGTGATTATGCATCTGTTGAATTGTCAAAACTGAAGAGACATATTAGATGCCATACCGGCGAACGACCTTAtcagtgtcCACATTGTACATATGCAAGTCCGGATACATTTAAACTAAAACGTCATCTTCGCATTCACACTGGAGAAAAACCATATGAATGTGATTTTTGTCAAGCAAGATTTACTCAATCCAATAGTTTGAAAGcgcataaattaatacataatgtAGGTGATAAACCAGTATTTCAATGTGAGTTATGCCCCGCTACATGTGGCAGAAAAACAGATCTTAGAATTCATGTGCAAAAGTTGCATACTTCAGATAAACCACTAAAATGCAAACGTTGCGGAAAGACATTCCCAGACAGatatagcTATAAATTGCACAGTAAAACTCACGAAGGAGAAAAGTGTTACAAGTGCGATCTATGTCCATATGCATCTATATCGGCGCGTCATTTGGAAAGTCATATGCTTATTCATACCGATCAGAAACCATATCAATGTGATCACTGCTTTCAATCATTTAGACAAAAACAATTACTCAAACGACATTGTAATCTCTATCATAATCCTAACTACGTTCCTCCAGCGCCACAAGAAAAAACGCATCAATGTCCTGAATGTGAAAGAGCATTCAGACATAAAGGTAATCTTATTCGTCATATGGCCGTTCACGATCCAGAATCGTCTCTGCAAGAAAAACAGCAAGCTTTGAAAATTGGTAGACAGAAGAAGATACAAATCATTGATGGTCAACGTGTTGAAGTAATGACAGGTGATTTAGCTTCTAAACTTAAAGGTTATGAAgatgaagaagaggaggaagatGAGGATGACATGATGGCGGTTCAAGGTAGTGATGGCCAGCAATACGTTGTGTTAGAAGTGATTCAATTAGCGGATACTCAAGGAACTGATCAGATGGCTGTTGTCGCAAGTGAAGATGGAGAATTAGTAATGCAAGATCCTTTAACTCAAGACAGTAGCATGGTAACAGGAACAGGAGAAGAAATTGATGAAGTAGAAGAAGATATGGAATTGGATGACCTAAAGATAGAACCCTCTACTCCCTCAAAATCATCAGCACAGAATTCACAACATGATCCTAAATTGCAAAAGGAAATGGAAACCTGTTTCGGATTTGATGAGgaagaagaagaagaagaaagtggTAATGATATAAACATGTTACAAACAATTtcgtaa
Protein Sequence
MSNVAAIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANSDEPPVMTQVQIQEVEETDVQNEGDATQDEQFQEIEELENAEGDEDGQVNGENNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPETEEKESKSTEDDATTVAVAAAAAAAPAEGEEAEGEQDLTVYDFEDNEDNEAPVESETEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKYCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPNYVPPAPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYEDEEEEEDEDDMMAVQGSDGQQYVVLEVIQLADTQGTDQMAVVASEDGELVMQDPLTQDSSMVTGTGEEIDEVEEDMELDDLKIEPSTPSKSSAQNSQHDPKLQKEMETCFGFDEEEEEEESGNDINMLQTIS