Basic Information

Insect: Trachymyrmex cornetzi
Gene Symbol: -
Assembly: GCA_001594075.1
Location: NW:1012142-1021024[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.021 14.7 4.1 1 23 239 261 239 261 0.97

2 11 9.6e-06 0.00066 19.4 1.5 1 23 267 289 267 289 0.98

3 11 0.00048 0.033 14.1 3.6 1 23 295 318 295 318 0.95

4 11 0.0095 0.66 10.0 5.2 1 21 324 344 324 346 0.95

5 11 9.6e-05 0.0066 16.3 1.9 1 23 352 374 352 374 0.99

6 11 5.5e-05 0.0038 17.0 0.8 1 23 380 402 380 402 0.98

7 11 0.0005 0.034 14.0 0.8 1 23 410 433 410 433 0.97

8 11 2.6e-05 0.0018 18.1 2.6 2 23 440 461 439 461 0.97

9 11 9.6e-05 0.0066 16.3 0.3 1 23 467 489 467 489 0.99

10 11 0.0025 0.18 11.8 7.3 1 19 495 513 495 518 0.91

11 11 8.4e-08 5.8e-06 25.9 1.3 1 23 532 554 532 554 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.021	14.7	4.1	1	23	239	261	239	261	0.97
2	11	9.6e-06	0.00066	19.4	1.5	1	23	267	289	267	289	0.98
3	11	0.00048	0.033	14.1	3.6	1	23	295	318	295	318	0.95
4	11	0.0095	0.66	10.0	5.2	1	21	324	344	324	346	0.95
5	11	9.6e-05	0.0066	16.3	1.9	1	23	352	374	352	374	0.99
6	11	5.5e-05	0.0038	17.0	0.8	1	23	380	402	380	402	0.98
7	11	0.0005	0.034	14.0	0.8	1	23	410	433	410	433	0.97
8	11	2.6e-05	0.0018	18.1	2.6	2	23	440	461	439	461	0.97
9	11	9.6e-05	0.0066	16.3	0.3	1	23	467	489	467	489	0.99
10	11	0.0025	0.18	11.8	7.3	1	19	495	513	495	518	0.91
11	11	8.4e-08	5.8e-06	25.9	1.3	1	23	532	554	532	554	0.98

Sequence Information

Coding Sequence: ATGAGTAACGTAGCTACTATAAAATTGGAAGAGGGACAAGAATCTGTCACCGAGATACAAACTTACTTGGAGACATTTAATAAAGAGATTGAGGGTGGACAAGGCGAACAGTTGCAACATGTACAATtgCAACAAGTGGAAGGATTATCTGGTGGAGAAGAGGGTGGGACATACTTCGTCGATCAGTCTGGTCAATATTATTACCAGGCAAATAGTGACGAACCGCCTGTAATGACACAGGTACAAATACAGGAAGTAGAAGAGACTGATGTACAAAACGAAGGTGATGCAACTCAAGATGAACAATTTCAAGAAATCGAGGAACTTGAAAATGCTGAAGGTGATGAAGACGGACAGGTCAACGGTGAAAACAATCAAGTTGTAATTAACTCTGGCGATGCATATCAAACTGTCACGATTGTACCATCCGATACAAATCCTGGAGAAGTTAGTTAcgttttgatagttcaacaaccTGAAACCgaagagaaagaaagtaaaTCTACGGAAGATGATGCAACGacagtagcagcagcagcagctgctgctgctgcaccCGCTGACGGAGAAGAAGCAGAAGGTGAACAAGATCTCACTGTATATGATTTTGAAGACAATGAAGACAATGAGGCTCCAGTTGAATCTGAGGCAGAAGATGacaaaactaaaattattaagttcCTCCCAAAGAAATCTCAAACCGTAACTCAAGCTCATATGTGCAACTATTGCAACTATACTAGCCCAAAACGATACCTTTTGTCACGACATATGAAATCGCACTCAGAAGAAAGGCCACATAAATGTAGTGTTTGTGAGCGAGGATTTAAAACGCTAGCTTCACTTCAGAATCATGTTAACACTCATACTGGGACCAAACCTCATCATTGCAAATATTGCGAGAGTGCATTTACAACTTCTGGTGAACTTGTAAGACATGTTCGCTACAGACACACCCATGAAAAACCACATAAATGTCATGAGTGCGATTATGCATCTGTCGAATTATCAAAACTGAAAAGACATATTAGATGCCATACTGGCGAACGACCTTATCagtgtcCACATTGTACATATGCAAGTCCGGATACATTTAAACTAAAACGTCATCTTCGCATTCACACTGGAGAAAAACCATATGAATGTGATTTTTGTCAAGCAAGATTTACTCAATCCAACAGTTTGaaagcacataaattaatacataatgTAGGTGATAAACCAGTATTTCAATGCGAGTTATGTCCCGCTACATGTGGCAGAAAAACAGATCTTAGAATTCATGTGCAAAAGTTGCATACTTCAGATAAACCATTAAAATGCAAACGTTGCGGAAAGACATTCCCAGACAGatatagCTATAAGTTGCACAGTAAAACTCACGAAGGAGAAAAGTGTTACAAGTGCGACCTTTGTCCATATGCATCTATATCGGCGCGTCATTTGGAAAGTCATATGCTTATTCATACCGATCAGAAACCATATCAGTGTGATCACTGCTTTCAATCATTTAGACAAAAACAATTACTCAAACGGCATTGCAATCTCTATCATAATCCTAACTATGTTCCTCCAGCACCACAAGAAAAAACGCATCAATGTCCTGAATGTGAAAGAGCATTTAGACATAAAGGTAATCTTATTCGTCATATGGCCGTTCACGATCCAGAATCGTCTCTGCAAGAAAAACAGCAAGCTTTGAAAATCGGTAGACAGAAGAAGATACAAATCATTGACGGTCAACGTGTTGAAGTAATGACAGGTGATTTAGCTTCTAAACTTAAAGGTTATGAAGAtgaagaagaggaggaagatGAGGACGACATGATGGCGGTTCAAGGTAGTGATGGCCAGCAATACGTTGTGTTAGAAGTAATTCAGTTAGCGGATACTCAAGGAACTGATCAGATGGCTGTTGTCGCAAGTGAAGATGGAGAATTAGTAATGCAAGATCCTTTAACTCAAGACAGTAGCATAGTAACAGGAACAGGAGAAGAAATTGATGAAGTAGAAGAAGATATGGAGTTGCATGACCTAAAGATAGAACCCTCTACTCCATCAAAATCATCAGCACAAAATTCACAACATGATCCTAAATTGCAAAAAGAAATGGAAACCTGTTTCGGGTTTGATGAGgaagaagaagaagaagaagaagaagaagaaagtggtaataatataaacatattacaaacaatttcgtaa
Protein Sequence: MSNVATIKLEEGQESVTEIQTYLETFNKEIEGGQGEQLQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANSDEPPVMTQVQIQEVEETDVQNEGDATQDEQFQEIEELENAEGDEDGQVNGENNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPETEEKESKSTEDDATTVAAAAAAAAAPADGEEAEGEQDLTVYDFEDNEDNEAPVESEAEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKYCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPNYVPPAPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYEDEEEEEDEDDMMAVQGSDGQQYVVLEVIQLADTQGTDQMAVVASEDGELVMQDPLTQDSSIVTGTGEEIDEVEEDMELHDLKIEPSTPSKSSAQNSQHDPKLQKEMETCFGFDEEEEEEEEEEESGNNINILQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_01477096;
80% Identity: -