Basic Information

Insect: Solenopsis invicta
Gene Symbol: -
Assembly: GCA_016802725.1
Location: NC:15281006-15288721[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00028 0.025 14.7 4.1 1 23 232 254 232 254 0.97

2 11 8.7e-06 0.00077 19.5 1.5 1 23 260 282 260 282 0.98

3 11 0.00044 0.038 14.1 3.6 1 23 288 311 288 311 0.95

4 11 0.0087 0.77 10.0 5.2 1 21 317 337 317 339 0.95

5 11 8.8e-05 0.0077 16.3 1.9 1 23 345 367 345 367 0.99

6 11 5e-05 0.0044 17.1 0.8 1 23 373 395 373 395 0.98

7 11 0.00045 0.04 14.1 0.8 1 23 403 426 403 426 0.97

8 11 2.4e-05 0.0021 18.1 2.6 2 23 433 454 432 454 0.97

9 11 8.7e-05 0.0077 16.3 0.3 1 23 460 482 460 482 0.99

10 11 0.0023 0.2 11.8 7.3 1 19 488 506 488 511 0.91

11 11 7.7e-08 6.8e-06 25.9 1.3 1 23 525 547 525 547 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00028	0.025	14.7	4.1	1	23	232	254	232	254	0.97
2	11	8.7e-06	0.00077	19.5	1.5	1	23	260	282	260	282	0.98
3	11	0.00044	0.038	14.1	3.6	1	23	288	311	288	311	0.95
4	11	0.0087	0.77	10.0	5.2	1	21	317	337	317	339	0.95
5	11	8.8e-05	0.0077	16.3	1.9	1	23	345	367	345	367	0.99
6	11	5e-05	0.0044	17.1	0.8	1	23	373	395	373	395	0.98
7	11	0.00045	0.04	14.1	0.8	1	23	403	426	403	426	0.97
8	11	2.4e-05	0.0021	18.1	2.6	2	23	433	454	432	454	0.97
9	11	8.7e-05	0.0077	16.3	0.3	1	23	460	482	460	482	0.99
10	11	0.0023	0.2	11.8	7.3	1	19	488	506	488	511	0.91
11	11	7.7e-08	6.8e-06	25.9	1.3	1	23	525	547	525	547	0.98

Sequence Information

Coding Sequence: ATGAGTAACGTAGCAGCTATAAAATTGGAAGAGGGACAAGAATCTGTCACCGAAATACAAACTTACTTGGAAACGTTTAATAAAGAGATAGAGGGAGGACAAGGTGAATTACAACATGTGCAATtacaACAAGTGGAGGGCTTATCTGGTGGAGAAGAGGGTGGGACATACTTTGTCGATCAGTCTGGTCAGTATTATTACCAGGCAAATAGTGATGAACCACCTGTAATGACACAAGTACAGATACAAGAAGTGGAAGAGACTGATGTACAAAATGAAGACGAGACAGCTCAAGATGAGTATCAAGAGATTGAAGAACTTGAAAATGCCGAGGGCGATGAGGATgCACAAGTCAACGGTGACAACAATCAAGTTGTAATTAATTCTGGCGATGCATATCAAACTGTCACAATTGTACCATCTGACACAAATCCTGGAGAAGTAAGTTATGTTTTAATAGTTCAGCAACCTGAGactgaagagaaagagagtaaacCTGTGGAAGATGAAGCAACGACAGTAGCGGCAGCAGCTGCAGCTGAGGAAGAAGAAGCAGAAGGTGAACAAGATCTCACTGTATACGACTTTCAAGATAATGAAGACAATGAAGCGCCAGTGGAATCTGAGGCGGAAGATGACAAGACTAAAATCATTAAGTTCCTCCCAAAGAAATCTCAAACCGTGACGCAAGCTCATATGTgcaattattgcaattatacCAGCCCAAAACGATATCTTTTATCACGGCATATGAAATCGCATTCAGAAGAAAGACCACATAAATGTAGTGTTTGTGAGCGAGGGTTTAAAACTCTGGCCTCGCTTCAGAATCATGTTAACACTCATACTGGGACCAAGCCTCATCATTGCAAATATTGCGAGAGTGCATTTACAACTTCTGGTGAACTTGTAAGACATGTTCGATATAGACATACCCATGAAAAACCACATAAATGTCATGAGTGCGATTATGCATCTGTTGAGCTGTCAAAACTGAAAAGACATATTAGATGCCACACAGGCGAACGACCTTATCAGtGTCCACATTGTACATATGCAAGTCCTGATACATTTAAACTGAAACGCCATCTTCGCATACACACTGGAGAAAAACCATATGAATGTGATTTTTGTCAAGCCAGATTTACTCAATCCAATAGTTTGAAAGCgcataaattaatacataatgTAGGCGATAAACCAGTATTTCAATGTGAATTATGCCCAGCTACATGTGGCAGAAAAACGGATCTTAGAATTCATGTGCAAAAGTTACATACTTCTGATAAACCACTAAAATGCAAACGTTGTGGAAAAACATTCCCGGACAGATATAGCTACAAGTTACATAGCAAAACTCATGAAGGAGAGAAATGTTACAAGTGCGATCTATGTCCGTATGCATCTATATCGGCACGTCATTTGGAAAGTCATATGCTTATTCATACTGATCAAAAGCCGTATCAATGTGATCACTGCTTTCAATCATTTAGACAAAAACAGTTACTCAAACGGCATTGCAATCTCTATCATAATCCCTCTTATGTTCCTCCACCGCCACAAGAAAAAACACATCAATGTCCCGAGTGTGAAAGAGCATTTAGACATAAAGGTAATCTTATTCGTCATATGGCTGTTCACGATCCGGAATCATCTCTGCAAGAAAAACAGCAAGCTCTTAAAATCGGCAGACAGAAAAAGATTCAAATTATTGATGGCCAACGTGTTGAAGTAATGACAGGTGATTTAGCTTCTAAACTTAAAGGTTAtgaagacgaagaagaagaagaagatgaagatgACATGATGGCAGTTCAAGGCAGCGATGGCCAACAATATGTTGTGTTAGAAGTGATCCAGTTAGCTGATAATCAAGGAACTGATCagATGGCTGTTGTCGCGAATGAGGATGGAGAGTTGGTAATGCAAGATCCTTTAACTCAAGAAAATAGTATAGTAACAGGAACAGGAGACGAAATTGACGAAGTAGATGAGGAAGACATAGAAATGCATGATCTAAAGATAGAACCCAGTACTCCATCAAAATCTACACAGAACTCACAAAATGATCCTAAATTGCAAAAGGAAATGGAAACCTGTTTCGGGTTTGATGAGgaagaagaggaagaagaaagcgGTAATAATATAAACATGTTACAGACAATTTCGTAA
Protein Sequence: MSNVAAIKLEEGQESVTEIQTYLETFNKEIEGGQGELQHVQLQQVEGLSGGEEGGTYFVDQSGQYYYQANSDEPPVMTQVQIQEVEETDVQNEDETAQDEYQEIEELENAEGDEDAQVNGDNNQVVINSGDAYQTVTIVPSDTNPGEVSYVLIVQQPETEEKESKPVEDEATTVAAAAAAEEEEAEGEQDLTVYDFQDNEDNEAPVESEAEDDKTKIIKFLPKKSQTVTQAHMCNYCNYTSPKRYLLSRHMKSHSEERPHKCSVCERGFKTLASLQNHVNTHTGTKPHHCKYCESAFTTSGELVRHVRYRHTHEKPHKCHECDYASVELSKLKRHIRCHTGERPYQCPHCTYASPDTFKLKRHLRIHTGEKPYECDFCQARFTQSNSLKAHKLIHNVGDKPVFQCELCPATCGRKTDLRIHVQKLHTSDKPLKCKRCGKTFPDRYSYKLHSKTHEGEKCYKCDLCPYASISARHLESHMLIHTDQKPYQCDHCFQSFRQKQLLKRHCNLYHNPSYVPPPPQEKTHQCPECERAFRHKGNLIRHMAVHDPESSLQEKQQALKIGRQKKIQIIDGQRVEVMTGDLASKLKGYEDEEEEEDEDDMMAVQGSDGQQYVVLEVIQLADNQGTDQMAVVANEDGELVMQDPLTQENSIVTGTGDEIDEVDEEDIEMHDLKIEPSTPSKSTQNSQNDPKLQKEMETCFGFDEEEEEEESGNNINMLQTIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00730251;
90% Identity: iTF_01477096;
80% Identity: -