Tcor002387.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachymyrmex cornetzi
Gene Symbol
ZNF236
Assembly
GCA_001594075.1
Location
NW:169473-185929[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.00014 0.0094 15.8 0.7 2 23 190 211 189 211 0.96
2 24 0.00024 0.016 15.1 1.1 1 23 217 239 217 239 0.98
3 24 2e-05 0.0014 18.4 0.3 2 23 245 266 245 266 0.97
4 24 0.0047 0.33 11.0 0.2 3 23 274 294 272 294 0.96
5 24 9.9e-05 0.0069 16.2 0.6 2 23 305 326 305 326 0.98
6 24 5.2e-07 3.6e-05 23.4 0.9 1 23 345 367 345 367 0.99
7 24 2.3e-05 0.0016 18.2 0.2 1 19 373 391 373 392 0.97
8 24 1.8e-05 0.0012 18.6 0.7 1 23 401 424 401 424 0.95
9 24 0.00022 0.015 15.2 1.8 1 23 433 456 433 456 0.97
10 24 6.2e-07 4.3e-05 23.2 0.3 1 23 578 600 578 600 0.98
11 24 0.00039 0.027 14.4 0.8 1 23 606 628 606 628 0.99
12 24 0.044 3 7.9 3.6 1 23 634 656 634 656 0.97
13 24 7.4e-05 0.0051 16.6 2.7 1 23 660 682 660 682 0.98
14 24 0.0054 0.37 10.8 7.1 1 23 737 759 737 759 0.98
15 24 2.3e-05 0.0016 18.3 4.9 1 23 765 787 765 787 0.99
16 24 3.5e-06 0.00024 20.8 1.7 1 23 793 815 793 815 0.98
17 24 0.00031 0.022 14.7 8.7 1 23 821 843 821 843 0.98
18 24 1 72 3.6 1.3 2 23 1197 1218 1196 1218 0.87
19 24 0.00011 0.0077 16.1 3.7 1 23 1224 1246 1224 1246 0.99
20 24 0.036 2.5 8.2 1.1 2 23 1253 1274 1252 1274 0.96
21 24 2e-08 1.4e-06 27.9 1.4 2 23 1350 1371 1349 1371 0.98
22 24 6.3e-05 0.0044 16.8 5.0 1 23 1377 1399 1377 1399 0.99
23 24 0.0019 0.13 12.2 3.9 1 23 1405 1427 1405 1427 0.97
24 24 0.00024 0.017 15.0 3.1 1 23 1433 1455 1433 1455 0.99

Sequence Information

Coding Sequence
ATGTTGACGGAACAGAATGTGATTATGGAACTAACTGGTTCTAGTGATGCAGTGATTGGTTTTATCACTACCGATGATGGTCATGCGCTACTGGCAGTAGATGATTTCTTTTCAGAACGTGAGGACAGTACACTGGAATTTATGACTACACCAATCACATTTATGCCACAGAATAACATGGTATCTCCAACACTGTCTTCAACACTGATAAAGACGACGGacggaaattttattttacattcgCCTATTTTCCAAATGAATGTGCAGGGTCTGTCAGGAACTGCGATGCAACAAACAAATCTACTGCCACGGAtgcaatatttagaaaatagatCTGCAATTACAGAACAATTAAAAGTACAAGATACGAATGAATGTGCAATTACAGAATATCTATTACCTATTAGAGATAATAGCAGTGTGTTATCAGACAAAGGACAGTTAACAGTCAACAATCATGCTAAAAGCAAATCTACGCCTGTATTTAATACCGTACAAAACGTCTACAAAAGATCTCCAGGGAGACCAAAGAAAAATGAAGTAAATTCGCAAaatacacagtttctgcaGTGTGATATATGCAGTCAAGAATTTACTAAACAAGCATTATACCGTAAACATATGGAAAATCATGCCGAAGAGAAACCGCATAGATGTCCAAAATGTTCAGCATCGTTTAATATTCCAACAAATTTCACGCTTCATATGGCAACGCATAATACCGGTGACCCAAAATGCCCCGAATGCGGTAGGAAATATGCCAGAATGGCGAGTCTCAAGTCTCATATGTTGCTACACGAAAAGGAGGAGAATCTCTTTTGCACGGAGTGTGAGGATGCCTTTTCGACGAAGgCCCAATTGGATGCGCATTTAAAACTTCACGGAGAAAAGTGGGCGAGCGAGGATGTGCGGAAATGCAAATTATGCAACAAACAATTCGTGCAGCCCGCACTCTACCGAATGCACATTCGCGAGCATTACAGGACGAAGATAGTAAAACAAACTAAGAGGGGAACGAAACATAAAACAATGTACAAATGTACCATATGTTTGAAGACTTTCCAAAAACCGAGCCAATTAATACGACATATCAGAATACATACCGGGGAAAAGCCCTTTGAGTGTACCGTCTGCAACAGGGCGTTTACGCAAAAGAGTTCGCTACAAATCCATGCATGGCAACACAAGGGCATTCGGCCACATGCCTGTAGTCTCTGTAACGCCAAGTTTAGTCAAAAAGGAAATCTAAAGGCGCATATACTCAGAGTGCACAATGCACCAGAAGGTGAATCAACGTATGCGTGTTCCTATTGTTCCTGCGTCTTTAAGAGGCTGGGCAGTTTAAATGGACACATAAAGCGAATGCATTCTGTTACCTCGGAGGAATTCAGCGCAAAATCCTCGGAAGCTAATCCTATCTCGTCGGAAGCTGAAATGCGCGCGACCGTCGACAGTGTTATATCACAATTGGCATCTTTGGAATCCGTTGTGAATAATACTGCAGATTCCACAAGAACTACGATCTTAAGTGCGGAACAGAATGATATTTTGCAACAGGCATTAAAAAACAGCGGTTTACCAAACAAAAACGATGTCGTTTCGAAAGAAACCGTGGAACCAAAGAAGACTGATTCATCAACGTCGTATGTCACGTTAGTAGACAGAACTGCTGGTGGTACTTCGAgGAAGTATCTCACTATAAAACAACGCTGCGTAGGAAACATACGGTGGTATGCGTGTTCATTTTGCCCAAAAGAATTCAAAAAGCCGTCGGATCTAATACGTCATTTGCGCGTGCACACCCAAGAGAAACCCTTCaagTGTATGTATTGCGTACGTTCTTTTGCGCTAAAATCGACAATGATAGCGCATGAGCGGACTCATACTGGAGTGAAGAAATATGCCTGCGAGTCCTGCGACAAAACCTTTGCGTGTCATAACAGTCTTACCGCTCACACAAAATTACACACAAAACCGCACAAATGCAATATATGCGACAAATCATTTAGCGCAAGCACCATTCTAAAAAATCACATGAAGAGCCATACGCGGGAGAAACCCAAGATATCGCCGGAGGCGGAAAGTCTGGTGCCGCAAGTGGTACTGCAAGAACCGCTCGTCATTAGTGATGCTGGTAATAAAATCAGTGTGGCACAGGTGCAGTCGAAACAGAAACAATTATACGAAAGTGTCGGCGTGGCCAGGCCGCACAAATGTTGGGTTTGTCATGCGGCGTTCAGGAAAGTTAGTCACTTGAAGCAACATTTTCGCAGGCATACGGGCGAACGTCCTTACAAGTGTTCCAAGTGCGACAGGAGATTCACATCGAACAGTGTTCTGAAGTCTCACTTACATACGCACGACGATACGAGGCCGTACAGTTGTTCTGTATGCGACACGAAATTCTCCACGCAAAGCAGCATGAAGAGGCATTTGGTCACACATAGCAATAAAAGGCCATACATGTGTCCATACTGTCACAAAACGTTTAAGACATATGTCAATTGCCGAAAGCACATGAAGAGGCACAAACACGAGCTGGCACAACGGCAATTGGAGGAACAAAAGATGCAAGCTCAGAAGGATTCACAGCCTTCGAGCGAAGCTAAGGAAGCTACATCAGCATTACCGGAGAGCATTACTCTCACCGAAGATATGGAGGTGTCGTTTCAACCGCAAATGGCACCAGATTTTACGCAGGCTTTCTCTGATCagtttcaaaatattaacaCGGAGAAAGAAAAATCCTTTTTATTACCGGACAATACAACGCCATCGATAGTGAATCaaaatttatCTGTTGACACAACTAATTTAGGAACGTCGCAAACTTTACACGCCGATGAAACTGGTGCTATCACATTACCTAATTACTCAGGGGATCAAACTTTCACGCCGGAAAGTATACGAGAGATAGAGGAGACTCTAAATCAGCAGTTATTCAACATGGGCATGAATCTCGAGCTGGGAACAAACAATTTGCCGAGGCAGATGGACGAAGCGAACACAAATTCTCTCGACAATTCTAGAGAACAGCCGGTgctcaatattatatatgaacaTAACAAATCTCTGGAATCGTCAGGCAATACCATATTCATGTCGCAATTTGATTCATTTGATATGAATCAAATAACGTTGCAGACGGATAACGATATAGACATTGGTTTAAATCCGAACAACTCTATGAATATGTCCAGTATTTTGCCCAGATCCGTGGGAAGTCAACAAGAGAAACAACGAGCTCCAGTTACTACAGCTAGCAATATAGATGCTTCTCAAATTACGAGAAACACTCATCTGGTGGTAATAAATCCTAAGGAAAATTGTTCGGAATTAGTGAGACTTTCGCAAGTATGCCCGTCGAAGTACTCAAAAGTCATCGCGAAAGCGGATACCACGAATGGATCGGAGATGCAAGGCATAAATGGGCATGAAAAGGcatcacaaaaaagtaatgcTAAGTCGTGTGAAAACGAAAGAAATTCTTTCatGAAGAATTTTCAAAGTACAATGCCATCGGAGATGCTTGTTTCATCTGGCATAACAGACAACTCAGTCAAAATATCGCAGTGTAACACTTTGCTGCAATGTCACGTGTGCGGCGATCAAGGTTTCACGACAGAGAGATTGAAGGAACATTTGAAATCTCATCGCGGTGACAAAGAGTATGAATGTTCCGAGTGTTCCCAGCGATTCTGCACAAACCGCGGTCTCAGTAAGCACCTGAAGATGCACATGAataagcaGCGATGGAAATGCACGATATGTCAGAAAGTACTAGACAGCAAACTGCAAATGAAATATCACAGTAAAATGCACACCGCAACTTGGAATGTTTTGTCCATGGAGCCGGACAGCTCTCAGAAGAATGTTATTTCCTCGAGTTCTGGTTTACCATCCGATCTAACAATGTCGCTGGATGTCCGAGCAGATTCAAACCCGTCAGTTTCCGAGAAGGTTTTGATGGCCGCAGTCGCCGAGAAAAAAAGCATGGACCGCGCTGATGAGAACATAGTGAAGAAAGAGATAAGAGAATACACTAATAAATGCAAGTACTGTCCGAAAACTTTCCGCAAACCAAGCGATCTCATCAGGCACATTCGCACGCATACGGGTGAACGACCTTACAAGTGTGATCACTGCAACAAAAGCTTCGCGGTCAAGTGTACTTTGGACTCGCACATGAAGGTTCACACGGGCAAGAAGACGTTCTGCTGCCACGTCTGCAGCAGCTTGTTCGCTACAAAGGGCAGTTTAAAGGTTCACATGCGATTGCATACAGGTTCGAAACCATATAAATGTCTCGTGTGCGATCTTCGATTCCGCACTTCGGGTCACAAGAAGGTACATATGTTGAAACACGCAAGGGAGCATTGGCGGCCAGCCTCGAAAAACTCGGCAATAGTCCTCTTGATAATGCGTCAACAACGACAACTACTGCCATAA
Protein Sequence
MLTEQNVIMELTGSSDAVIGFITTDDGHALLAVDDFFSEREDSTLEFMTTPITFMPQNNMVSPTLSSTLIKTTDGNFILHSPIFQMNVQGLSGTAMQQTNLLPRMQYLENRSAITEQLKVQDTNECAITEYLLPIRDNSSVLSDKGQLTVNNHAKSKSTPVFNTVQNVYKRSPGRPKKNEVNSQNTQFLQCDICSQEFTKQALYRKHMENHAEEKPHRCPKCSASFNIPTNFTLHMATHNTGDPKCPECGRKYARMASLKSHMLLHEKEENLFCTECEDAFSTKAQLDAHLKLHGEKWASEDVRKCKLCNKQFVQPALYRMHIREHYRTKIVKQTKRGTKHKTMYKCTICLKTFQKPSQLIRHIRIHTGEKPFECTVCNRAFTQKSSLQIHAWQHKGIRPHACSLCNAKFSQKGNLKAHILRVHNAPEGESTYACSYCSCVFKRLGSLNGHIKRMHSVTSEEFSAKSSEANPISSEAEMRATVDSVISQLASLESVVNNTADSTRTTILSAEQNDILQQALKNSGLPNKNDVVSKETVEPKKTDSSTSYVTLVDRTAGGTSRKYLTIKQRCVGNIRWYACSFCPKEFKKPSDLIRHLRVHTQEKPFKCMYCVRSFALKSTMIAHERTHTGVKKYACESCDKTFACHNSLTAHTKLHTKPHKCNICDKSFSASTILKNHMKSHTREKPKISPEAESLVPQVVLQEPLVISDAGNKISVAQVQSKQKQLYESVGVARPHKCWVCHAAFRKVSHLKQHFRRHTGERPYKCSKCDRRFTSNSVLKSHLHTHDDTRPYSCSVCDTKFSTQSSMKRHLVTHSNKRPYMCPYCHKTFKTYVNCRKHMKRHKHELAQRQLEEQKMQAQKDSQPSSEAKEATSALPESITLTEDMEVSFQPQMAPDFTQAFSDQFQNINTEKEKSFLLPDNTTPSIVNQNLSVDTTNLGTSQTLHADETGAITLPNYSGDQTFTPESIREIEETLNQQLFNMGMNLELGTNNLPRQMDEANTNSLDNSREQPVLNIIYEHNKSLESSGNTIFMSQFDSFDMNQITLQTDNDIDIGLNPNNSMNMSSILPRSVGSQQEKQRAPVTTASNIDASQITRNTHLVVINPKENCSELVRLSQVCPSKYSKVIAKADTTNGSEMQGINGHEKASQKSNAKSCENERNSFMKNFQSTMPSEMLVSSGITDNSVKISQCNTLLQCHVCGDQGFTTERLKEHLKSHRGDKEYECSECSQRFCTNRGLSKHLKMHMNKQRWKCTICQKVLDSKLQMKYHSKMHTATWNVLSMEPDSSQKNVISSSSGLPSDLTMSLDVRADSNPSVSEKVLMAAVAEKKSMDRADENIVKKEIREYTNKCKYCPKTFRKPSDLIRHIRTHTGERPYKCDHCNKSFAVKCTLDSHMKVHTGKKTFCCHVCSSLFATKGSLKVHMRLHTGSKPYKCLVCDLRFRTSGHKKVHMLKHAREHWRPASKNSAIVLLIMRQQRQLLP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01523538;
90% Identity
iTF_01477787;
80% Identity
-