Taio060408.1
Basic Information
- Insect
- Torymus aiolomorphi
- Gene Symbol
- -
- Assembly
- GCA_036365515.1
- Location
- CM070875.1:26436407-26440439[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0052 2.5 11.5 0.1 1 20 53 72 53 73 0.95 2 17 0.00019 0.09 16.0 0.7 1 21 91 111 91 112 0.95 3 17 2.9e-05 0.014 18.5 1.3 2 23 149 171 148 171 0.96 4 17 0.0027 1.3 12.3 0.1 2 23 176 198 175 198 0.95 5 17 0.00097 0.47 13.7 0.8 3 23 206 226 205 226 0.95 6 17 1.8e-05 0.0084 19.2 1.6 2 23 234 256 233 256 0.95 7 17 0.028 13 9.2 6.5 1 23 265 287 265 287 0.98 8 17 0.064 31 8.0 0.4 3 23 295 314 295 314 0.98 9 17 4.5e-05 0.022 17.9 0.7 3 23 322 342 321 342 0.97 10 17 2.7e-05 0.013 18.7 5.5 1 23 348 370 348 371 0.96 11 17 7.8e-05 0.037 17.2 4.1 1 23 633 655 633 655 0.98 12 17 0.00038 0.18 15.0 1.0 3 23 690 710 688 710 0.97 13 17 0.022 11 9.5 0.9 1 23 729 752 729 752 0.93 14 17 0.0041 2 11.8 2.8 1 23 761 783 761 783 0.99 15 17 0.067 32 8.0 0.0 3 23 791 810 790 810 0.96 16 17 1.9e-06 0.0009 22.3 1.2 1 23 816 838 816 838 0.98 17 17 1.2e-05 0.0059 19.7 0.4 1 23 844 866 844 866 0.98
Sequence Information
- Coding Sequence
- ATGTTTTTCACGACAAACAGCAACATCCGATCGGTAATGAACCCCGCTAATCGCGTGATCGTCCTGCAGCCGGCAGCTGTCGTCTCCAGCACTGAACAAATAAAACAAGAAGAAGTAGATATAAGTGACGATGACAGGGATAACGGGGAGAATGCATATCAGTGCGACTCTTGCGACGAACTTTTCCCCGATCAGTCAACTTTGATCATTCATAAAACTGAAAAGTCTATTTTAAGGACGAGAGTAGCGCTGAGGGAGCCGCTTGTTAAATACACGTGTGAGATGTGCAATCGGTCGTTCATGTCGAAGGGCATGTACGAGCGGCACTACAAAATCTGCGGTTTTGTCGAGGTCGACAACCTGCCAGCAACCGGTCGTCGACGACGAGCACGCACTCGGGCGGAGCCGAAGAAAGTGAATGAAAACGGGGAGGAAGAACCCTCAACGTGCCAGAAATGCGGCAAGATCTTCAAGAAGGTGAAGTACCTGAAGGTCCACATGACGACCGCGCATGGTGAGCACATAGTGTGTCAGATCTGCGACGTCAAGTACGACACGATGGCGCTGCTGAAGTCCCACATGAACGAGGAGCACAGCGGTGACTTTACTGAGCACTGTGAGATCTGCAACAAAGGCTTTTACCTCAGGCAATCGTTGAAGGTCCATATGGCGGCGCATCTGCGCGACGATAATCCGAGCACATGCGAGCAATGCGGCAAGAACTTCCGGCACGAGGTTTATCTGAAGAAACATATACAGCTCGTGCACGTCGACGTGCAAGAGAGAAAACGCTTCAGCTGCGAGGAGTGCGACTACGAGACCAGCCACAAGACCTGCTTCCGCGAGCACATGTACAAACACACTGGCGAGGATATCATTGGCTGCGAGGTATGCGGTAAGCAGATGCGCAGAAGCTACCTCAGGATACATGCCCGAATACACACGGGTGAGAAACCAGAGATATGCGAGTTCTGCGGCAAGGCCTTCAGTGCCAGGAAGTACCTCACGAAGCACAGGATTACTCATACCGGCGAGAAGCCTTACCAGTGCCAGAAGTGCGGTAAGAAGTATACGCAACGCGGTACGTTGACGATGCACTTCAGGCGACATCATCCAGAGGAGGCAAACACGTGGATCGCCAAAGGCCCGGGTAGAAGACCGCATTTCGAAAAGAACAGAGAAAGGGATAAGGAAGTCAAACGCGGGATGGTCATTAGCGAGGATGGAACGATCGTGGAACAGACAGAAGAGCAGGAGGGAGAGAACGAAGCGAAGGAGATGGCAGgtgaggaagaggaagaagcgAAAGAAATGGTAGGTGAGGAAGAGGAAGAAACGAAAGAGATGGTAGATGAGGAAGAGGAATACGCAAAAGAGATGGTagatgaggaagaagaagaatcgAAAGAGGTGGTAGATGCGGGAGAGGAAGAAACAAAAGAGATTGTAGATGAGGAAGAGGAAGAATCGAAAGTGGTGGCGGCTGAGGGAGAGGAAGAAACGAAAGAGGTGGTAGGTGAGGAAGAGGAAGAAACGAAAGAGTTGGTAGATGCAGAAGAGGAAGAGGTGAATGTGGAAGAGGAGGAAGACTTCGCCGATGGAGAAGGTGAGATTATATTTCATGAAGTAGATATAGACGAGGAGGAAGTGGTGGGCGAGGAAGAAGTACAGAACgatgaagaatgtgaggaaGAAGTACAAAATGATGAAGAAGGCGAGGAAAAAGTACAGAACGATGAAGAAGGCGAGGAAGAAGTACAGAACGATGAAGATGGCGAGGAGAATTTAGAGCAGGAGTTAGCTGAAGAGGAAGAAGCATACGTCATCATCACCACCACTATCACAGCCAGTACTAGGAACAGCAGCAGTCCCTCGAAACCCAAACCACACCAACAGCACAAGTGCCGATACTGCTCACGACTCTTCCCAACCAAGTCACAGCTCACCCTGCACGTGCGCACGCACACGAAGAAGAGCTACGGCTGCAACTTTTGCGGCGAGCCTCAATTGTCCGCCGACGCTCTCAGCCAACATCTCGGCAAGCAGCATCCGAATCTCAGCTTCGGCTGCGAGATCTGCAGCAAATTCTACTCCAGCAATCGCGCGCTCAATCTCCACCAACGTTTCCACAATGCCAGGCGAACCAAAGCAAATGGCAACAAGAAGAGCGGTGCTGACGATAGACACGTGTGTCTTGTGTGCAACGCGAGCTACAGCTCTCTCGCGTACCTGAAATTACACTCGAAGCTGCGCCATGCCGATCCGGACGCGCGGCAGTTGTACAAGTGCAACGAGTGCAGTTTCGTCAGCTATTACAGGACGAATATGAGGAAACACGCGAGGAGTCACACTGGGGAGAACCTCGCGCCGTGCAATGTTTGCGGCAAAGCCGTGAACAAGACTTACATGGCCATACATGCGAGGATACATACCGGCGAGAAACCGCATGTGTGCGATGACTGCGGCAAGGCGTTCAGCGTGAAGAAGTACCTGGTGGTGCACAAAAGGACGCACACGGGTGAGCGACCCTTCCCGTGCAAATTCTGCGACAAACGGTTCACCCAGGAGTCGCCGTTGGCAGCACACGTTAAAAGCCACTTGCGGAAGAGCAAATTTGGTGGCAACGGATAA
- Protein Sequence
- MFFTTNSNIRSVMNPANRVIVLQPAAVVSSTEQIKQEEVDISDDDRDNGENAYQCDSCDELFPDQSTLIIHKTEKSILRTRVALREPLVKYTCEMCNRSFMSKGMYERHYKICGFVEVDNLPATGRRRRARTRAEPKKVNENGEEEPSTCQKCGKIFKKVKYLKVHMTTAHGEHIVCQICDVKYDTMALLKSHMNEEHSGDFTEHCEICNKGFYLRQSLKVHMAAHLRDDNPSTCEQCGKNFRHEVYLKKHIQLVHVDVQERKRFSCEECDYETSHKTCFREHMYKHTGEDIIGCEVCGKQMRRSYLRIHARIHTGEKPEICEFCGKAFSARKYLTKHRITHTGEKPYQCQKCGKKYTQRGTLTMHFRRHHPEEANTWIAKGPGRRPHFEKNRERDKEVKRGMVISEDGTIVEQTEEQEGENEAKEMAGEEEEEAKEMVGEEEEETKEMVDEEEEYAKEMVDEEEEESKEVVDAGEEETKEIVDEEEEESKVVAAEGEEETKEVVGEEEEETKELVDAEEEEVNVEEEEDFADGEGEIIFHEVDIDEEEVVGEEEVQNDEECEEEVQNDEEGEEKVQNDEEGEEEVQNDEDGEENLEQELAEEEEAYVIITTTITASTRNSSSPSKPKPHQQHKCRYCSRLFPTKSQLTLHVRTHTKKSYGCNFCGEPQLSADALSQHLGKQHPNLSFGCEICSKFYSSNRALNLHQRFHNARRTKANGNKKSGADDRHVCLVCNASYSSLAYLKLHSKLRHADPDARQLYKCNECSFVSYYRTNMRKHARSHTGENLAPCNVCGKAVNKTYMAIHARIHTGEKPHVCDDCGKAFSVKKYLVVHKRTHTGERPFPCKFCDKRFTQESPLAAHVKSHLRKSKFGGNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01466512; iTF_01468245;
- 90% Identity
- -
- 80% Identity
- -