Tsin001971.1
Basic Information
- Insect
- Torymus sinensis
- Gene Symbol
- -
- Assembly
- GCA_030522985.1
- Location
- JAPYZP010000723.1:12859-16850[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0084 1.9 10.9 0.1 1 20 78 97 78 98 0.95 2 17 5.5e-05 0.013 17.8 0.5 1 21 116 136 116 137 0.95 3 17 7.8e-06 0.0018 20.5 1.0 2 23 174 196 173 196 0.96 4 17 0.005 1.2 11.6 0.2 2 23 201 223 200 223 0.95 5 17 0.0016 0.36 13.2 1.1 3 23 231 251 230 251 0.95 6 17 1.9e-05 0.0044 19.3 1.6 2 23 259 281 258 281 0.95 7 17 0.32 73 6.0 9.1 1 23 290 312 290 312 0.97 8 17 0.14 31 7.1 0.6 3 23 320 339 320 339 0.98 9 17 4.9e-05 0.011 18.0 0.7 3 23 347 367 346 367 0.97 10 17 3.3e-05 0.0077 18.5 4.9 1 23 373 395 373 396 0.96 11 17 0.00047 0.11 14.9 2.0 1 23 619 641 619 641 0.98 12 17 0.007 1.6 11.2 0.6 3 23 676 696 674 696 0.97 13 17 0.024 5.6 9.5 0.9 1 23 713 736 713 736 0.93 14 17 0.022 5 9.6 2.8 1 23 745 767 745 767 0.98 15 17 0.062 14 8.2 0.0 3 23 775 794 774 794 0.96 16 17 2e-06 0.00047 22.3 1.2 1 23 800 822 800 822 0.98 17 17 6.9e-06 0.0016 20.6 0.5 1 23 828 850 828 850 0.98
Sequence Information
- Coding Sequence
- ATGAAGCAACCGGCTATCCTCCGACGCAAACCCATCTGCCACCCCTATCAGCATATCGTTAATATGGATCCGTTCTCCAAGACAATGTTCTTCACGACAAACAGCAACATCCGATCGGTAATGAACACCGTTAATCGCGTGATCGTCCTGCAGCCGGCAGCCATCGTCTCCGACACCGATCAAATCAAACAAGAAGAAGTAGAAACATTAGTCGATAACGGGGAGAATGCATACCAGTGCGACTCGTGCGACGAACTTTTCCCCGATCGCTCAACTTTGATCATTCATAAAACTGAAAAGTCTATTTTAAGGACGAGAGTAGCGCTGAGGGAGCCACTTGTTAAGTACACGTGTGAGATGTGCAATCGGTCGTTCGTGTCTAAGGGCATGTACGAGCGGCACTACAAGATCTGCGGTTTCGTCGAGGTCGACGATCAGCCGGCGACTGGTTGTCGACGACGAGTACGCACTCGGGTGGAGCCGAGGAAGCTGAACGAAAACGGCGAGGAAGAGCCGTCGATGTGCCAGAAATGCGGCAAGATCTTCAAGAAGGCGAAGTACCTGAAGGTCCACATGACGACCGCGCACGGTGAGCACATAGTGTGTCAGATCTGCGACGCCAAGTGCGACACGATGGCGCTGCTGAAGGCCCACATGAACGAGGAACACAGCGGCGACTGTACTGAGCACTGTCAGATCTGCAACAAAGGCTTTTACCTCAGGCAATCGTTGAAGGTCCACATGGCGGCGCATCTGCGCGACGATAATCCCAGCACGTGCGAGCAATGTGGCAAGAACTTCCGGCACGAGGTTTATCTGAAGAAACATATACAGCTCGTGCACGTAGACGTGCCGGAGAGAAAACGCTTCTGCTGCGAGGAGTGCGACTACGAGACCAGCCACAAGACCTGCTTCCGCGAGCACATGTACAAACATACGGGCGAGGATATCATTGGCTGTGAGGTATGCGGCAAGCAGATGCGCAGAAGCTACCTCAGGATACATTCCCGAATACACACAGGTGAGAAACCAGAGATATGCGAGTTCTGCGGCAAGGCCTTCAGTGCCAGAAAGTACTTGACGAAGCACAGGATTACTCATACCGGCGAGAAGCCTTACGAGTGCCAGAAGTGCGGTAAGAAGTATACCCAACGCGGGACGTTGACGATGCATTTCAGGCGGCATCATCCAGAGGAGGCAAGCACATGGATCGCCAAAGGCCCGGGCAGAAGGCCGCATTTCGAAAAGAACAAGGAAAGGGATAAGGAAGTCAAACGCGGGATGGTCATTAGCGAGGATGGAATGATAGTGGAAGCGAAAGAAGAGCACGAGGGGGATGGAGATGAGGAAGAAGCGAAGGAGTTGATAGATGAGGAAGAAGCAAGGGACTTGGTAGAAGAGGAAGAAGCGAAGGAGATGGTAAATGAGGAAAAGGAAGAAGCAAAGGAGATGATAAATGAGGTAAAGGAAGAAGCGAAAGAGATAGAAGAGGAAGAAACCGAAGAGGTGCTAGatgaggaagaggaagaagcgAACGAGATGGTAgacgaggaagaggaagaagaagcgaAAGAGATGGTAgacgaggaagaggaagaaaCGAAAGAGGTGGTAGATGAAGAAATGGAAGAGGTGAatgaggaagaggaggaagccTTCGCCGATGAAGAAGGTGAGATTATAATTCGTGAAGTAGATATAGACGAGCAGGAAGTGGTGGGCGAGGAAGAAGTACAGAATGAAGAAGAAGGCGAGGAGAATTTAGAGCAGGAATACGTCATCATCACCACGACCACTATCACAACCAGCACCAGCGACAGCAGCAGTCCCTCGAAACCCAAACCACGCCCACAGCACAAGTGCCGATACTGCTCGCGACTCTTCCCAACCAAGCCGCAGCTCGCCCTGCACGTGCGCACGCACACGAAGAAGAGCTTCGGCTGCAACTTCTGCGGCGAGCCTCAATTGTCCGCCGACGCTCTAAGCCAGCATCTCGGCAAGCAACATCCGAATCTCAGCTTCGGCTGCGAGTTCTGCGACAAATTCTACCCCACCGATCGCGCGCTCAATCTCCACCAACGTTTCCACAATACCAACGCAAACGGCAGCAAGAAGAAGAGCGACGCTGACGATAGACACGTGTGTCTTGTGTGCAACGCGAGCTACAGCTCTCTCGCGTACCTCAAGTTACACTCGAAGCTCCGCCATGCCGATCCGGACTCGCGGCAATTGTACAAATGCAACGAGTGCAGCTTCGTCAGCTACTACAGGACGAATATGAGGAAACACTCGAGGGGTCACACTGGGGAGAACCTCGCGCCGTGCAATGTTTGCGGCAAAGCCGTGAACAAGACCTACATGGCCGTGCACGCGAGGATACATACCGGCGAGAAACCGCACGTGTGCGACGACTGCGGCAAGGCGTTCAGCGTGAAAAAGTACCTGGTCGTGCACAAAAGGACGCACACGGGCGAGCGACCCTTCCCCTGCAAATTCTGCGACAAACGGTTCACCCAGGAGTCGCCGTTGGCCGCGCACCTTAAGAGCCACCTGCGGAAGATCGAATTTGGTGGCAACGGATAA
- Protein Sequence
- MKQPAILRRKPICHPYQHIVNMDPFSKTMFFTTNSNIRSVMNTVNRVIVLQPAAIVSDTDQIKQEEVETLVDNGENAYQCDSCDELFPDRSTLIIHKTEKSILRTRVALREPLVKYTCEMCNRSFVSKGMYERHYKICGFVEVDDQPATGCRRRVRTRVEPRKLNENGEEEPSMCQKCGKIFKKAKYLKVHMTTAHGEHIVCQICDAKCDTMALLKAHMNEEHSGDCTEHCQICNKGFYLRQSLKVHMAAHLRDDNPSTCEQCGKNFRHEVYLKKHIQLVHVDVPERKRFCCEECDYETSHKTCFREHMYKHTGEDIIGCEVCGKQMRRSYLRIHSRIHTGEKPEICEFCGKAFSARKYLTKHRITHTGEKPYECQKCGKKYTQRGTLTMHFRRHHPEEASTWIAKGPGRRPHFEKNKERDKEVKRGMVISEDGMIVEAKEEHEGDGDEEEAKELIDEEEARDLVEEEEAKEMVNEEKEEAKEMINEVKEEAKEIEEEETEEVLDEEEEEANEMVDEEEEEEAKEMVDEEEEETKEVVDEEMEEVNEEEEEAFADEEGEIIIREVDIDEQEVVGEEEVQNEEEGEENLEQEYVIITTTTITTSTSDSSSPSKPKPRPQHKCRYCSRLFPTKPQLALHVRTHTKKSFGCNFCGEPQLSADALSQHLGKQHPNLSFGCEFCDKFYPTDRALNLHQRFHNTNANGSKKKSDADDRHVCLVCNASYSSLAYLKLHSKLRHADPDSRQLYKCNECSFVSYYRTNMRKHSRGHTGENLAPCNVCGKAVNKTYMAVHARIHTGEKPHVCDDCGKAFSVKKYLVVHKRTHTGERPFPCKFCDKRFTQESPLAAHLKSHLRKIEFGGNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01465609;
- 90% Identity
- -
- 80% Identity
- -