Taio119424.1
Basic Information
- Insect
- Torymus aiolomorphi
- Gene Symbol
- -
- Assembly
- GCA_036365515.1
- Location
- CM070877.1:152124596-152127705[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0052 2.5 11.4 0.1 1 20 61 80 61 82 0.94 2 13 7e-07 0.00033 23.6 0.6 1 23 160 183 160 183 0.96 3 13 3.8e-05 0.018 18.2 3.0 2 23 190 212 189 212 0.95 4 13 9.4e-05 0.045 16.9 3.5 1 21 219 239 219 240 0.95 5 13 4.5e-08 2.1e-05 27.4 1.8 1 23 251 273 251 273 0.98 6 13 2.1e-05 0.01 19.0 0.5 2 23 283 304 282 304 0.97 7 13 0.036 17 8.8 0.2 2 23 311 332 310 332 0.96 8 13 1.5e-06 0.00073 22.6 2.5 1 23 338 360 338 360 0.99 9 13 1.1e-05 0.0052 19.9 2.6 1 23 366 388 366 388 0.95 10 13 2e-05 0.0095 19.1 1.4 1 23 394 417 394 417 0.94 11 13 5.1e-07 0.00025 24.1 0.6 1 23 423 445 423 445 0.98 12 13 3.9e-07 0.00019 24.4 3.6 1 23 451 473 451 473 0.98 13 13 7.7e-06 0.0037 20.4 0.9 2 23 480 502 479 502 0.95
Sequence Information
- Coding Sequence
- ATGGGCGAAGTGATCGAGTTTCTGAAGGTGGAAAACACCTACTTGCAGGAGAACggtgaaaatattattgttgttGATGATTTGTTGGAGAATGGTGATGGCACACTTATTATACCCAATATTATTAATGCGGAAGAagTACTTGCAcaaaatggccaaataatagagATTATTGGGGATTACGAATGCGTAACCTGTCACCGTATTTTTGCAAGTGAtgatTTGTTGAAGGAACACTTAGAAGTATGCAGAGAAGAAGATGATGACGTTGACATTTTAGAATTAAGTAGAATCGATGACTTGGATTCAGATGATGAAGACAATGCAGATGATCCAGACTATAATACAGATTCTACAAGTCCATCAGACTCACagaagttaaaaaataataataaaaaaggagCAATAAAGCCAGTATCTGAAGAACAATGTCATTGTTGTGCTGAAGATTTAAAAACTGCTCATTCTGGAGGTCCTCATAAATGTCCTAACTGTGatctttcatttaaaaaaccATCTTCTTTAGAAAGACATTTAATTGTTATTCATTGGGAATCTGATTCATGTTCATGCAACGATTGTGGTGAGACTTTTCGTGATAAAAAAGCTCTTGATAAGCATCGCTACACTACACATGTAAAAACTAATAAAGTTTACCAATGTGATAAATGCGAAACTTACTTTTCAAGAAGCTATCACTTAAATCGTCACAAACAACAATCAGGCTGTCATGGAGATACCAATAATACCTTTTCATGTCAGGtttgcaataaaatatttacacgtAAAGATAATTTACGTGAGCACTTGCGAACTCATGCCGGAATGCcacaaagaaagaaaaaatcttGTGATCTTTGTCCAAAACAGTTTTACACAAATCAGCAGTTAATCATTCACCAGCGTGTACATACTGGAGAGAGACCAGTAGAATGTGATTTATGTCCCAAGacatttttatctattttagCAATGAAAAAACATCGTAGAGTGCACACTGGAGAGAAACCATTTGAATGTAAATATTGCCAAAAAAAATTTGCTGCAAGAGAAACATTAAATCGACATCAAAGAACTCACACTGGAGAGAAGCCCCATGTTTGCCAGTATTGTAATAAGTCATTCATTCAAGCAGCTCAACTCAGAGCACATATATTTCACCATACAGGAGAAAATGGCTTTTACTGTGATGTTTGTGGAAAAGCTTTTAATCGTAAAGCGCGTCTtacaaatcataaaaaatttgttcacgAAGGTGCTACaccttttaaatgtgaaatatgtgAAAAAGCTTTTACAAGAAAAGAAGATTTATCCAAACATGTAAACCTACATGCTGGAATCAAACctcatAAATGTGACACTTGCGGAAAATGTTTTGCTGCTAAATCATCCTTGCAAGCTCATATGAATACACATCGACGAGAACCACCTCAATCTTGTGCAGAGTGTGGAAGAGCATTTATTCGTCAAGATTGTCTTATGCGTCACATACGAGCAAAACACAGAGATCTTTTAGAAGATGTACTTGGTGAAGCAGAAAAGAAACATTTACATTTGCAAATGTTTAATATCGCTTACATTGCtgctgaaaaaattaaatctggAGAAACCAATCTTCTTTCAACAGAAGAATTGATGAAAGCTATTACAGAACTCTTAactattttgatagaaaaagAAGCTTTGGAGttatttggtTGGCTTCAATCACCTCTACAAGATGTTTTAGAAGCAGTCATAAGAAGGTGTGGGCATGAACCACTTACAGCAGAAAGTGATTTACCCCTGCCAGAGAGACTAAGAGGAAATGTCAGACTTCTATTCAATGCTGTTATAGAAGATGAAAATGTCAAGTCTTTGTTAACAACACAAACTGTTGATGAAGTAATCATGCACGTtcttaaaataacgaaaaataacaaagaatCTGAAAAACAATAA
- Protein Sequence
- MGEVIEFLKVENTYLQENGENIIVVDDLLENGDGTLIIPNIINAEEVLAQNGQIIEIIGDYECVTCHRIFASDDLLKEHLEVCREEDDDVDILELSRIDDLDSDDEDNADDPDYNTDSTSPSDSQKLKNNNKKGAIKPVSEEQCHCCAEDLKTAHSGGPHKCPNCDLSFKKPSSLERHLIVIHWESDSCSCNDCGETFRDKKALDKHRYTTHVKTNKVYQCDKCETYFSRSYHLNRHKQQSGCHGDTNNTFSCQVCNKIFTRKDNLREHLRTHAGMPQRKKKSCDLCPKQFYTNQQLIIHQRVHTGERPVECDLCPKTFLSILAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHVCQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCEICEKAFTRKEDLSKHVNLHAGIKPHKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLHLQMFNIAYIAAEKIKSGETNLLSTEELMKAITELLTILIEKEALELFGWLQSPLQDVLEAVIRRCGHEPLTAESDLPLPERLRGNVRLLFNAVIEDENVKSLLTTQTVDEVIMHVLKITKNNKESEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_01468239; iTF_01466507; iTF_01469926; iTF_01469075;
- 80% Identity
- -