Ttex005428.1
Basic Information
- Insect
- Torymus texanus
- Gene Symbol
- -
- Assembly
- GCA_036873485.1
- Location
- JAYJLV010000046.1:14817218-14820359[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0014 0.36 13.3 0.2 1 20 62 81 62 83 0.94 2 13 7.2e-07 0.00019 23.6 0.6 1 23 167 190 167 190 0.96 3 13 0.00013 0.035 16.5 3.1 2 23 197 219 196 219 0.95 4 13 3.5e-05 0.0093 18.3 4.0 1 21 226 246 226 247 0.95 5 13 4.6e-08 1.2e-05 27.4 1.8 1 23 258 280 258 280 0.98 6 13 2.2e-05 0.0057 19.0 0.5 2 23 290 311 289 311 0.97 7 13 0.019 5 9.7 0.4 2 23 318 339 317 339 0.96 8 13 1.6e-06 0.00041 22.5 2.5 1 23 345 367 345 367 0.99 9 13 1.1e-05 0.0029 19.9 2.6 1 23 373 395 373 395 0.95 10 13 2.1e-05 0.0054 19.0 1.4 1 23 401 424 401 424 0.94 11 13 1.4e-07 3.6e-05 25.9 1.2 1 23 430 452 430 452 0.98 12 13 4.1e-07 0.00011 24.4 3.6 1 23 458 480 458 480 0.98 13 13 7.9e-06 0.0021 20.3 0.9 2 23 487 509 486 509 0.95
Sequence Information
- Coding Sequence
- ATGGGTGAAGTGATCGAGATTCTAAAGGTGGAAAACACCTACTTGCAGGAAAACGGcgaaaatattattgttgttgATGATTTGTTGCAGAATGGTGAGAATACCACAATTATTATACCCGATGTGATTAATGCGGAAGaagtaCTTGCACAAAATGGCCAAATAATACAGATTATTGGGGATTACGAATGTGTCACCTGTCACCGCATTTTCTCAACTGACGAtCTGCTGAAGGAACACTTAGAAGTATGCAGggaagaagatgatgatgttgatATATTAGAATTAAATAGAATCGATGATTTGGATTCAGATGAAGACGTGGATGAGGATGATGAAGACAATGCCGATGACCCAGACTATAATACAGATTCTACAAGTCCATCAGACtcacagaatttaaaaaataataataaaaaaggagcAATAAAGCCAGTATCAGAAGAACAATGTCATTGTTGTGCTGAAGATGTAAAAACTGCACATTCTGGAGGTCCTCATAAATGTCCTAACTGtgatctttcatttaaaaaaccatCCTCTTTAGAAAGGCATTTAATTGTTATTCATTGGGAATCTGATTCATGTTCATGCAAAGATTGTGGAGCAACTTTTCGTGATAAAAAAGCTCTTGATAAGCATCGTTATACTACACATGTAAAAACtaataaagtttacaaatgtgATAAATGCGACACTTACTTTTCAAGAAGCTATCATTTAAACCGTCACAAACAACAATCAGGTTGTCATGGAGATACCAATAACTCCTTTTCATGTCAGgtttgtaataaaatatttacacgcaAGGATAATTTACGTGAGCATCTGCGAACTCATGCTGGAATGccacaaagaaagaaaaaatcttgtGATCTTTGCCCAAAGCAGTTTTACACAAATCAACAGTTGATTATCCATCAACGTGTACATACTGGAGAGAGACCAGTAGAATGTGATTTATGTCCTAAGACATTTTTATCTACTTTAGCAATGAAGAAACATCGTAGAGTTCACACTGGAGAGAAAccatttgaatgtaaatattgCCAAAAAAAATTTGCTGCAAGAGAAACATTGAATCGACATCAAAGAACTCACACTGGAGAAAAGCCCCATGTTTGCCAGTATTGTAATAAGTCATTTATTCAAGCTGCTCAACTTAGAGCACATATATTTCACCACACAGGAGAAAATGGCTTTTACTGTGATGTTTGTGGAAAGGCTTTTAATCGCAAAGCACGTCttacaaatcataaaaaatttgttcatgaAGGTGCTACAccttttaaatgtaaaatatgtgaTAAAGCTTTTACAAGAAAAGAAGATTTGTCCAAACATGTGAATTTACATGCTGGAATCAAACCTCATAAATGTGACACTTGTGGAAAATGTTTTGCTGCCAAATCATCCTTACAAGCACATATGAATACTCATCGACGAGAACCACCCCAATCATGTGCAGAGTGTGGAAGAGCATTTATTCGTCAAGATTGTCTTATGCGTCACATACGAGCCAAACATAGAGATCTTTTAGAAGATGTTCTTGGTGAAGCAGAAAAgaaacatttacatttacaaatgtTTAATATCGCTTACATTGCTgctgaaaaaatgaaatctgGAGAAACAAATCTTCTCTCAACAGAAGAATTGATGAAAGCTATTACAGAGCTTTTAACTGTTTTgatagaaaaagaaactttGGAGttatttggTTGGCTTCAGTCACCTCTACAAGATGTTTTAGAAGCAGTTATAAGAAGGTGTGGGCATGAACCACTTACAGCAGAAAGTGACTTACCTCTGCCAGAGAGACTAAGAGGAAATGTTAAACTTCTATTCAATGCTGttattgaagatgaaaatgtcAAGTCTTTGTTAACAACGCAAACTGTTGATGAAGTAATCATGCATGTtcttaaaataacgaaaaataacaaagaatctgaagaaaaacaataa
- Protein Sequence
- MGEVIEILKVENTYLQENGENIIVVDDLLQNGENTTIIIPDVINAEEVLAQNGQIIQIIGDYECVTCHRIFSTDDLLKEHLEVCREEDDDVDILELNRIDDLDSDEDVDEDDEDNADDPDYNTDSTSPSDSQNLKNNNKKGAIKPVSEEQCHCCAEDVKTAHSGGPHKCPNCDLSFKKPSSLERHLIVIHWESDSCSCKDCGATFRDKKALDKHRYTTHVKTNKVYKCDKCDTYFSRSYHLNRHKQQSGCHGDTNNSFSCQVCNKIFTRKDNLREHLRTHAGMPQRKKKSCDLCPKQFYTNQQLIIHQRVHTGERPVECDLCPKTFLSTLAMKKHRRVHTGEKPFECKYCQKKFAARETLNRHQRTHTGEKPHVCQYCNKSFIQAAQLRAHIFHHTGENGFYCDVCGKAFNRKARLTNHKKFVHEGATPFKCKICDKAFTRKEDLSKHVNLHAGIKPHKCDTCGKCFAAKSSLQAHMNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDVLGEAEKKHLHLQMFNIAYIAAEKMKSGETNLLSTEELMKAITELLTVLIEKETLELFGWLQSPLQDVLEAVIRRCGHEPLTAESDLPLPERLRGNVKLLFNAVIEDENVKSLLTTQTVDEVIMHVLKITKNNKESEEKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00691361;
- 90% Identity
- iTF_01465607;
- 80% Identity
- -