Tvir016351.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tortrix viridana
Gene Symbol
-
Assembly
GCA_963241965.1
Location
OY725185.1:3413744-3427247[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.00011 0.0084 17.2 0.1 3 23 123 143 122 143 0.97
2 19 9.6e-07 7.7e-05 23.6 1.2 1 23 149 171 149 171 0.99
3 19 6e-06 0.00048 21.1 2.7 1 23 177 199 177 199 0.99
4 19 4.4e-07 3.5e-05 24.6 1.2 1 23 214 236 214 236 0.99
5 19 0.00012 0.0096 17.0 0.7 1 23 251 273 251 273 0.98
6 19 5.5e-05 0.0044 18.1 3.1 1 23 288 310 288 310 0.98
7 19 6.8e-07 5.4e-05 24.1 1.5 1 23 325 347 325 347 0.99
8 19 0.00017 0.013 16.5 2.8 1 23 353 375 353 375 0.98
9 19 7.4e-05 0.0059 17.6 0.1 1 23 382 404 382 404 0.99
10 19 1.2e-05 0.00095 20.1 2.1 1 23 410 432 410 432 0.99
11 19 0.038 3.1 9.1 1.8 1 23 439 461 439 461 0.98
12 19 6.4e-07 5.1e-05 24.1 2.3 1 23 467 489 467 489 0.99
13 19 0.044 3.6 8.9 1.8 1 23 496 518 496 518 0.98
14 19 2.6e-06 0.00021 22.2 1.5 1 23 524 546 524 546 0.99
15 19 0.0005 0.04 15.0 0.7 1 23 553 575 553 575 0.99
16 19 2.9e-06 0.00023 22.1 1.9 1 23 581 603 581 603 0.98
17 19 0.0021 0.17 13.1 0.3 1 20 609 628 609 631 0.93
18 19 0.00011 0.0088 17.1 0.9 2 23 638 659 637 659 0.96
19 19 3.7e-06 0.0003 21.7 1.4 1 23 665 688 665 688 0.97

Sequence Information

Coding Sequence
ATGTTCGAGCAGCAGATCAAGGCTGAACCCATGAGCTTCTACACATCCCACGCCCACGTGCACCCGGGCCCGCCGACGCTGGTGCGGGAACACGCCATCATCAACATGAACCAGCACCACCCCGAGGACTCTAAGGACAGCCTCGTCGTGCAGCAGCAGGTGCAGCACCAGGACCTGATGGAGCACCAGCAGGACCTTCAGCAGGACGATGAGTTAAGCTTTAAGGGGATGGATGATGAAGGCGTCGAAATGGATATGGACGGTCGCCAATGCTCTCAGGGCATGGGCGTCGATATGGGATCAGTAACAACAAAAATGGAAGTAACAAACGGAGGCCAATCAACACCACGTTCAAAGCCCCAGGCCTGTAAGGTTTGCGGTAAAGTACTGTCGTCCGCTTCGTCTTACTACGTCCATATGAAGCTTCACTCGGGAAACAAACCTTTTCAGTGCACGGTTTGCGACGCAGCTTTTTGCCGCAAACCGTATTTAGAGGTTCACATGCGAACTCACACGGGGGAGAGGCCTTTCCAATGCGACCTGTGCCTCAAACGATTCACACAGAAATCAAGCCTGAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGTTGGTGTCCAAGGAGCGGCCGTACCGCTGCGAGCTGTGCGGCGTGCGCTTCACGCAGAGTTCCAGCCTCAACCGACACCGGAAAATACACACGGAGGAGCACAGACGCGCGCTGCTGGCTAAGGATCGCCCCTACCAGTGCGGCGTCTGCTATCTGAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGGAAAATACATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGAGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCGTATCAGTGCGACGTCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACCCACAAGCGTATACACACTGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGTGCAGGGGCGCCCTTACTCGTGCGGGCTCTGCCCGGCGGCGTTCGCCCGCCGCCCCTACCTGGACACTCACATGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCGTGTCTCAAGCGCTTCACGCAGAAATCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGCCCCGCCGCCTTCACCTGCAAGCAATACCTGGAGATCCACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGTCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGACGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACCTGCAAGCAGTACCTCGAGATCCACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGCGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAACATCCACAAACGAACGCACACAGTACAAGGTCGGCCGTATCAGTGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGCACGCATACTGGCGAGAGGCCTTTCGAGTGCGATGTCTGTTACAAGCGATTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGGAGAACGGCCATACGCCTGTGACATATGTCAGAAACGATTTGCCGTGAAGAGCTATGTAACAGCACACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACGTCGAAGGCGCAGTTCGCGCTGCACATCCGCACGCACTCCGCCGGCTCGTGCTACGAGTGCAGCGTGTGCGGGCGCACCTTCGTGCGGGACAGCTATCTCATACGGCATCACAACCGCGTGCACCGCGAGAACCACAGCAACGTCTCGGCGAGCAGCCTCGGCGCGCTCAGCGTCGCCAACACCAACCACTCCAACAGCACGTTCGTCGACGAGCCCGGCGCCTGCGACCTCAGTTTCGTCCCTATGGTGAATCGCTACATGACATCTCAAGGGACACAAGTTTCCATGCAAGACACGCAGAGTAAGATGTCGGCTATGTCTCCCCAGTCTATTGCGTCGATATcgtcgccgccgccgccgcacacgcccgcgccgccggcgccgggccGGATGCACCTCGCCGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHPGPPTLVREHAIINMNQHHPEDSKDSLVVQQQVQHQDLMEHQQDLQQDDELSFKGMDDEGVEMDMDGRQCSQGMGVDMGSVTTKMEVTNGGQSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALVSKERPYRCELCGVRFTQSSSLNRHRKIHTEEHRRALLAKDRPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTVQGRPYSCGLCPAAFARRPYLDTHMRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHSAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSASSLGALSVANTNHSNSTFVDEPGACDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPAPPAPGRMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00009314;
90% Identity
iTF_00010401;
80% Identity
-