Ahol027475.1
Basic Information
- Insect
- Acleris holmiana
- Gene Symbol
- -
- Assembly
- GCA_949316455.1
- Location
- OX438777.1:14660955-14679165[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.00013 0.015 16.9 0.1 3 23 123 143 122 143 0.97 2 18 1.2e-06 0.00014 23.4 1.2 1 23 149 171 149 171 0.99 3 18 7.4e-06 0.00086 20.9 2.7 1 23 177 199 177 199 0.99 4 18 5.5e-07 6.4e-05 24.4 1.2 1 23 214 236 214 236 0.99 5 18 6.7e-05 0.0079 17.8 3.1 1 23 303 325 303 325 0.98 6 18 8.4e-07 9.8e-05 23.8 1.5 1 23 340 362 340 362 0.99 7 18 0.00021 0.024 16.3 2.8 1 23 445 467 445 467 0.98 8 18 0.00032 0.038 15.7 0.1 1 23 499 521 499 521 0.98 9 18 1.5e-05 0.0017 19.9 2.1 1 23 527 549 527 549 0.99 10 18 0.047 5.6 8.9 1.8 1 23 556 578 556 578 0.98 11 18 7.9e-07 9.3e-05 23.9 2.3 1 23 584 606 584 606 0.99 12 18 0.055 6.4 8.7 1.8 1 23 613 635 613 635 0.98 13 18 3.2e-06 0.00038 22.0 1.5 1 23 641 663 641 663 0.99 14 18 0.00061 0.072 14.8 0.7 1 23 670 692 670 692 0.99 15 18 3.6e-06 0.00042 21.9 1.9 1 23 698 720 698 720 0.98 16 18 0.0026 0.31 12.8 0.3 1 20 726 745 726 748 0.93 17 18 0.00014 0.016 16.9 0.9 2 23 755 776 754 776 0.96 18 18 4.6e-06 0.00054 21.5 1.4 1 23 782 805 782 805 0.97
Sequence Information
- Coding Sequence
- ATGTTCGAGCAGCAGATCAAGGCTGAACCCATGAGCTTCTACACATCCCACGCCCATGTGCACACGGGCCCGCCAACACTGGTGCGGGAGCACTCCATCATCAACATGAACCAGCACCACCCCGAGGACTCCAAGGACAGCCTTATCGTACAACAGCAGGTGCAGCACCAAGACTTAATGGACCACCAGCAGGACCTTCAGCAGGACGATGAGtTAAGCTTTAAGGGGATGGATGATGAAGGCGTCGATTTGGATATGGACGGCCGCCAATGCTCTCAGGGTATGGGCGTCGACATGGGATCAGTAACAACAAAAATGGAAGTATCCAACGGAGGCCATTCAACACCACGTTCTAAGCCGCAGGCCtgtaagGTTTGTGGCAAAGTGCTCTCGTCCGCGTCGTCATACTACGTCCATATGAAGCTTCACTCGGGAAACAAACCATTTCAGTGCACGGTTTGCGATGCAGCTTTTTGCCGCAAGCCGTACTTAGAGGTTCACATGCGAACCCACACGGGTGAAAGACCGTTCCAGTGCGACCTGTGCCTCAAACGATTCACTCAGAAATCAAGCCTCAACACGCACAAACGCGTCCACACCGATGAGCACATGCGCGCGCTGGTGGCCAAGGAGCGGCCCTACCGCTGCGAGCTGTGCGGCGTGCGCTTCACGCAGAGCTCCAGCCTCAACCGCCACCGGAAAATACACACGGAGCCGCACAGGCGCGCGCTGCTGGCTAACGATCGCCCCTACCAGTGCCGCGTCTGCTATCTGAGAGTTTGGGCCGGCACGGGAAAATGCCGGTGGGCCTTACCTTTACCTGGCGGCCCGCGCCGCTCCCTCCGAGCCGGCTCGCTCGCGACCGCCAAGGAGCACAGACGAGCCCTGTTAGAGAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTGGGCCGACATGGGAAAATACATACTGaGGAGCACATCCAATCGCTGATCAACAAAGTGCGCCCGTATCAGTGCGACGTCTGTGACAAGCGGTTCACGCAGAAGTCCAGCCTGGGCACCCACAAGCGTATACACACTGGTGGGTCCCTTGATATTACTCTTTACTTGCTCGGGCTCCGAGCCACAACGCTGACGTTCGCGGGCTCCCGGGCTCTGACTCGTCGCCGCTGTGGCTCCAACACCCTCGTTTTTGCAGAGCGTAGAGCAGAGCCTGGCGCCGTGATTATTTGTCCATCgtggttttgttttgtttctctGTCCTCGCGTCCGCGTGCGCGTGTCGGTCCTTGCGGTCGGTCGCGCGCTGCAGGGGAGCGGCCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGCGACGATCGGGCGGGATCGGGCGGCCCGGGCCTCCGCGCGGCGACGTGCGTTACTCGCTTTTGTGCACCGGGCAGTGCAGGCGCGCCCTTACCCGTGCGGGCTCTGCCCGGCGGCGTTCGCGCGCCGCGCCTACCTGGACACTCACACGCGCACGCACACAGGCGAGCGGCCCTATCAGTGCGACGCCTGTCTCAAGCGCTTCACGCAGAAATCCAGCCTCAATATACATAAGCGGACGCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAATACCTCGAGATCCACACGCGCACGCACACCGGCGAGCGGCCCTATCAGTGCGACATCTGTCTGAAGCGCTTCACGCAGAAATCCAGTCTCAACATCCACAAGCGGACGCACTCAGTGCAGGGCCGGCCCTTCCAGTGCCTGCAGTGCCCCGCCGCCTTCACGTGCAAGCAGTACCTCGAGATACACAACCGCACGCACACCGGCGAGCGGCCCTACCAGTGTGACGTCTGCCTCAAGAGATTCGCGCAAAAGTCCACACTCAACATTCACAAACGAACGCACACAGTGCAAGGTCGGCCGTATCAGTGCATGGAGTGTCCGGCGGCGTTCACTTGCAAGCCGTATCTGGAGATACACATGCGCACGCATACTGGCGAGAGGCCTTTCGAGTGCGATGTCTGTTACAAGCGTTTCACGCAGAAATCGACGCTCAACATTCACAAGCGAATTCACACCGGAGAACGGCCATACGCCTGTGATATATGTCAGAAACGATTTGCCGTGAAGAGCTACGTAACAGCACACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCCATGACGTTCACGTCGAAGGCGCAGTTCGCGCTGCACATCCGCACGCACTCGGCGAGCTCCTGCTACGAGTGCAGCGTGTGCGGCCGCACCTTCGTGCGGGACAGCTATCTCATTCGGCACCACAACCGCGTGCACCGCGAGAACCACAGCAACGTGTCGGCCAGCAGCCTCGGCGCGCTCGGCGCCGCCAGCCACGCCGGCGCCTTCGCCGACGAGCCCGGCGCCTGCGACCTCAGTTTCGTTCCCATGGTGAACCGTTACATGACCTCTCAAGGGACGCAAGTTTCCATGCAAGATACGCAAAGTAAGATGTCGGCTATGTCTCCCCAGTCTATTGCGTCGATATcgtcgccgccgccgccgcacacGCCGACGCCGCAGCCGCAGCTGGCGGGCCAGATGCACCTCGCCGACTGA
- Protein Sequence
- MFEQQIKAEPMSFYTSHAHVHTGPPTLVREHSIINMNQHHPEDSKDSLIVQQQVQHQDLMDHQQDLQQDDELSFKGMDDEGVDLDMDGRQCSQGMGVDMGSVTTKMEVSNGGHSTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALVAKERPYRCELCGVRFTQSSSLNRHRKIHTEPHRRALLANDRPYQCRVCYLRVWAGTGKCRWALPLPGGPRRSLRAGSLATAKEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHIQSLINKVRPYQCDVCDKRFTQKSSLGTHKRIHTGGSLDITLYLLGLRATTLTFAGSRALTRRRCGSNTLVFAERRAEPGAVIICPSWFCFVSLSSRPRARVGPCGRSRAAGERPFQCTVCLKSFTQKCALNLHEKIHTATIGRDRAARASARRRALLAFVHRAVQARPYPCGLCPAAFARRAYLDTHTRTHTGERPYQCDACLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKAQFALHIRTHSASSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSASSLGALGAASHAGAFADEPGACDLSFVPMVNRYMTSQGTQVSMQDTQSKMSAMSPQSIASISSPPPPHTPTPQPQLAGQMHLAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01134017; iTF_01464362;
- 90% Identity
- -
- 80% Identity
- -