Talt003422.1
Basic Information
- Insect
- Tortricodes alternella
- Gene Symbol
- zfpm1
- Assembly
- GCA_947859335.1
- Location
- OX401980.1:14471134-14484009[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.2 1.4e+02 3.5 0.4 2 23 6 27 5 27 0.96 2 13 0.42 27 5.8 0.2 1 23 993 1016 993 1016 0.92 3 13 1.7e-05 0.0011 19.6 1.7 2 23 1114 1135 1113 1135 0.97 4 13 0.014 0.86 10.5 3.8 1 23 1141 1163 1141 1163 0.99 5 13 0.0026 0.17 12.7 2.7 1 23 1169 1191 1169 1192 0.96 6 13 0.14 8.8 7.3 1.4 5 23 1205 1223 1204 1223 0.96 7 13 0.019 1.2 10.0 1.1 3 23 1230 1251 1229 1251 0.96 8 13 0.013 0.85 10.5 0.1 2 23 1267 1287 1266 1287 0.97 9 13 0.0038 0.24 12.2 0.6 3 20 1295 1312 1293 1315 0.85 10 13 0.0003 0.019 15.7 0.7 1 23 1323 1345 1323 1345 0.99 11 13 0.0036 0.23 12.3 7.6 1 23 1351 1373 1351 1373 0.98 12 13 6.5e-06 0.00042 20.9 1.3 1 23 1379 1403 1379 1403 0.98 13 13 0.0017 0.11 13.3 4.8 1 23 1409 1431 1409 1432 0.95
Sequence Information
- Coding Sequence
- ATGGAGCAGCTCGTGCAATGCCCCGTGTGCACGCTCTTCCTACACAATGGCATGACCCTGGAGTCCCATCTCGACACCCACCCCAAAGACCAGGTCATCAAAGCGCTGTGTACTTTATCAGCTAACAATGTTGGATTTGGGAGCCGGACTTCCACTCCGATGCACTCAGAGCGCTCATACAGGAGCAGGTCTCGGACTCCAGCTGAGGACAGCCCCCGATGGAGTGGCTCTCATCGCAGCATTGACAATGATAGATTTTGGCGCAGGACTCCCAGTAGATCTTCTAAAACACCTGTGTCAAGTATAACCCGGAATGGTACACCATCTGATGTGAGAATAGGTGACATTAATTTTGAGAACAGTTCTAATAACGCTCCATCAAATCTTTACCCAGGAATACCTTTTATGAAGAATGACAAGTCTACTCAGCCATTTGTCCAAAACCTTCCGGTGCCAGAGTTTGATCAACAGTACATTTACTACCCAGACCAGCAAGAGGACAAAGAGATAAAGTATTCACGTAGCGCTGAGTACAGTGCCATAGACAATGCTAACAGTGTTTTTGCTTATAACATGCCATCGTTGGCCCCAGCGGTCAAGGTACAGACAGCCTTGATGCCAGCAGGCTCTCGCAGGAATAGTGATTTAGTGAAATTGTTGCCCAAACCTAATAACATTTTGGTGAAAACAAATATGGGAGGTATGCAATACATTACTCCTGGAGTGAAGCCTGTGCACTTAATGGTGCCCACAGCACCTACGTTCATGCAAAAGAATGTTCAGAATAACATGATTGTGACTGGGAGCATTCCGACCAGTCAGATCATGGAGCCCAAGTCTGTAGCCCCTCCCTTAGGTACTAGTAACAGTCAATTCAATCAATTAACATCAGGTTCCTTCACCCCTGGCACCACTGTGGTAACCCAGAACTCTCAGATCATCTATAGAGAGATGGTGCATAATATTGATGGGAAACCCTTCATTTCCAGCATGCCCGCTGTCCTTAGTGGTCATGACAATGTCACTAATGTAGCTGCAGCTAGTTCTATGTACCAGAATGTTATGGTTGTTGATCAGTTTGGGAACACTTCGTGTATGTACACAACTCCTCAACAGCTTCTGTCGAAGCCATGTAGTACACCAATGTATAATGAAGTATCCATGAGTAATCTGGAGAAAGCATTACCTAACAATGTGGTTAATGAAACAAACAAAACGCTTATTATTGAAGTAAGTCCAATTGTGACCCCGGCACCAATGGAAGTCTGTGCCACCACAAGTACCTCGCAAGCATCCCAGACCATTTCCGGGTCCTCAACACCTACACCAGCGCCTGAGAAGCTCATAGAGAGAAATGACAGTAGAAATGAAACACCAGGACCGAGCAAGGGGCTCAAGATCCTTAGCAATATCAAAGTGGAAGTACCGGTACAGCATCACAAGAATTTGCTCAATACTGTGGTAGACCTGACTGGGTCTCATGAACCTGACTATCCAGATCATTCTACTTCTCCTGAGAGGATCCTTCCTGACTTTGAAGACAACAATCACAGCTTATCTGGGGATTGTATACATCCTTCTACCACTAGTAATGATAGTATAGTGTCAAATACATTCTCTGTGATAAAAAACGTTGGGAACCCTCCCTCATACAAAGATTCGGTTTCCAAGACCTGTGTAGTAGATAATAAAATTGATAATGAATTTTCGGACAGCTGCCCCATGCCTGATCTCATTTGCAAGGAGAAACCTTCTATCTCACCTTGCAGTGAGCTCTCGGAGAACGGGGAGAACTCCACTGATAGGATTTCTATAACTCCTAAACCATTGATTGCTCCTCCTCCTATTGACAATCTTGTAGAAAACATAAAGCCAACATCACAGAAGCCTCCCAGAAATGCACCCTTAAGACTGAACCATATATTTGTGAAGAAGCATAAAAAGATTTTAGAAATTAAGAATTCCAAGAATTATTCAGTAAGTCCATGCACCAGCAAAGACATACAGACTGAAACATCTATTAGACCTCCTGAAAATTTCACTATGAATAAGATTCATTCCGATATGATGGAGAATAAGGAAAAAACTGAAGTGCTGCAAACTGTAGCCGTTGAGGTTTTCAATGAAAGTGACAATCATCATGAATTTGATGCTGATACTGAAGAGCTGTCGATGGACATAGAACCTGTGGCACACTCCAGCATCAGCCACTCTGGTGTTAACATGGTGCAAGTTAAAGAGGAGATAAACACGAGTAACGAAGGCGGCTGCAGCAATGGCACCGGCACTTCTGACAGGGATCTGACACCTTTGGAGTCTATGCGACCGATCAACGTCATCTCCTACGGCAATATGGCGGCCGACGATTTCGACGACGAATCTAATCACAAAGAACTGCTAGAGCTCGAAGCGGCATCCAAGAACAAGCAGTTTGTGAGCATGATAAACGAAAACTACTTCGGGGATAATATTTACGCTGATTATTTCACACCAGATCGCGTTGAGTCTTTCGACGCTGCGCGGGAATCCGTGGCCCCGAAGGATGGGATGTATATTTGGGGAGAGTCTTCCCAGAAGGAGAGTGAGTTTGTCCTGCCCAACTTTATTCATGAGAGCTATAAGATAGCGGAGAGTAGTGGGGTGGAATACGCGGAGATAAGTGAGCGGGCTGATGCGGAAGGAGACACGTGCGAGCGGGACAGCAAAGTGGATGTGCTGAGTGAGGGAAGGAGCGAGAGCGAAGCGCCGCTGAATATATGCGCGGATGAGCGGATGCCGCCGCGCGGGGAACTGAGCGGCCAGGAAAGCAATGGAGACATGGAGTCACCTTGGAGTGGAATGTACACGGAGGTCACGCCGGCAGAGCCGTACGACCTTATTGCCCGCGAGAGCTGGGTCTCCGATGGATCGGAGATTGATCCCAGCGAGAAACGAGAAAGCCTGGAAGAAGACATTCATCTGCCTAAACCGCGCCTCTACACATGCGCGGCTTGCCGCGCGAAATTCACATCTTTAAAAGAGATGCGAGCGCACAAGGCATTGGCGCACGCGCCGCCCACTTGCTCCGGCGCGTCCTACAGCCGCCTGGTCACTGCTAGAAGCATCAAGAAGGAGGAGAAATCAGAGGACATCATACCAGGAGCGATCCTCCCGGACTCGAAGGAGTCCATCGCTACATCGATGCTCCAGGTCTACGATGCCATGGAATCCAAGCCCACAATAGAAACTCTGATCAAGCAGGAGCCCAAGCGGAAGCGTAGGGACTTCGTCTGCCCGACGTGCAAGGTGGACCAGGGTTCGGACACGGCATTCCACGCTCATCTGAAGCTGCACCCCCTGGAATGTCTCACTTGTGGGAAATGCTTCTTCAGGAGAGCTAATCTTGCGCTGCACATCAAAACCCATTTGGGTATTAGGAATTTCAAGTGCGAGGTGTGCGAGAAGCGCTTCCTGACGCGGCAGAAGCTGATGGAGCACCACAACACGCACACGGGGCGCGCGCCCTACAAGTGCACCGTGTGCGACGACGCCTTCCGCCGGTACTCCAACATGGTGCAGCACAGAGACCGGCACCACCTGCACAAGAAGCGCTCGGTGCGCGACTTCGTGTGCCAGTGCGGCGCCGTGTTCCACTCGCGCGCCAAGCTGCGCTGGCACCGCGAGACGCACGCGCCGCGCCCGCGCGCCTGCCTCTACTGCAGCGACAAGTTCGTGCACGCGGCCTCGCTCACGCGCCACGTGCGCCGCTCGCACAACGAGTACTACCTCGGCGAGCGCCGCGGCAAGGCCGAGAACGTGCCCTGCCCCGTCTGCAAGCAGGTGTACCTCCGAACAAACCTCCGCGCCCACCTCCTGACGCACAGCGGGAAGCGCCCCTACCTCTGCATCATCTGCAACAAAGCGTTCACCACCAAATGGAACCTCAAACTCCATCGCTGGACGCACATGTCGCGGTCAGCGAAACCCTACAAATGCAACCTCTGCAAAGGCGCCTTCATACGACAAACTGAATACATATCACACATGAACTCCCACAAATCGGTAAGACCTTACACGTGTAATTACTGCGGGTGCAAGTTTATAAGGAAATACAACTGCCAACGCCACGTGAGGGAGCACGAGATGGCGAAGAAGTATGTATGCAAAGTTCCGGAGTGTGGTAAATCGTTCCATAGGAGTTATTATCTGTCGGAACACATGAAGGTTCACAGCGGGGCGCGTCCGTTCTCCTGCAATATATGCGGGAAGATGTCGAGCAACAAGTCTAATCATAATAAACATGTGAAAATACACCACGCTCGGGAGCCGGTGGCGAGTGAGGCGTAG
- Protein Sequence
- MEQLVQCPVCTLFLHNGMTLESHLDTHPKDQVIKALCTLSANNVGFGSRTSTPMHSERSYRSRSRTPAEDSPRWSGSHRSIDNDRFWRRTPSRSSKTPVSSITRNGTPSDVRIGDINFENSSNNAPSNLYPGIPFMKNDKSTQPFVQNLPVPEFDQQYIYYPDQQEDKEIKYSRSAEYSAIDNANSVFAYNMPSLAPAVKVQTALMPAGSRRNSDLVKLLPKPNNILVKTNMGGMQYITPGVKPVHLMVPTAPTFMQKNVQNNMIVTGSIPTSQIMEPKSVAPPLGTSNSQFNQLTSGSFTPGTTVVTQNSQIIYREMVHNIDGKPFISSMPAVLSGHDNVTNVAAASSMYQNVMVVDQFGNTSCMYTTPQQLLSKPCSTPMYNEVSMSNLEKALPNNVVNETNKTLIIEVSPIVTPAPMEVCATTSTSQASQTISGSSTPTPAPEKLIERNDSRNETPGPSKGLKILSNIKVEVPVQHHKNLLNTVVDLTGSHEPDYPDHSTSPERILPDFEDNNHSLSGDCIHPSTTSNDSIVSNTFSVIKNVGNPPSYKDSVSKTCVVDNKIDNEFSDSCPMPDLICKEKPSISPCSELSENGENSTDRISITPKPLIAPPPIDNLVENIKPTSQKPPRNAPLRLNHIFVKKHKKILEIKNSKNYSVSPCTSKDIQTETSIRPPENFTMNKIHSDMMENKEKTEVLQTVAVEVFNESDNHHEFDADTEELSMDIEPVAHSSISHSGVNMVQVKEEINTSNEGGCSNGTGTSDRDLTPLESMRPINVISYGNMAADDFDDESNHKELLELEAASKNKQFVSMINENYFGDNIYADYFTPDRVESFDAARESVAPKDGMYIWGESSQKESEFVLPNFIHESYKIAESSGVEYAEISERADAEGDTCERDSKVDVLSEGRSESEAPLNICADERMPPRGELSGQESNGDMESPWSGMYTEVTPAEPYDLIARESWVSDGSEIDPSEKRESLEEDIHLPKPRLYTCAACRAKFTSLKEMRAHKALAHAPPTCSGASYSRLVTARSIKKEEKSEDIIPGAILPDSKESIATSMLQVYDAMESKPTIETLIKQEPKRKRRDFVCPTCKVDQGSDTAFHAHLKLHPLECLTCGKCFFRRANLALHIKTHLGIRNFKCEVCEKRFLTRQKLMEHHNTHTGRAPYKCTVCDDAFRRYSNMVQHRDRHHLHKKRSVRDFVCQCGAVFHSRAKLRWHRETHAPRPRACLYCSDKFVHAASLTRHVRRSHNEYYLGERRGKAENVPCPVCKQVYLRTNLRAHLLTHSGKRPYLCIICNKAFTTKWNLKLHRWTHMSRSAKPYKCNLCKGAFIRQTEYISHMNSHKSVRPYTCNYCGCKFIRKYNCQRHVREHEMAKKYVCKVPECGKSFHRSYYLSEHMKVHSGARPFSCNICGKMSSNKSNHNKHVKIHHAREPVASEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01246243; iTF_00156549; iTF_00325770; iTF_00155599; iTF_01135099; iTF_01136092; iTF_00021631; iTF_00342540; iTF_00023111; iTF_00009450; iTF_01464458; iTF_00010545;
- 90% Identity
- -
- 80% Identity
- -