Tyan043904.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- Zbtb8b_2
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:10062963-10064411[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.5 1.4e+04 -1.7 0.0 27 45 11 28 4 36 0.72 2 14 0.74 7.2e+03 -0.8 0.1 21 32 32 43 24 58 0.81 3 14 0.02 1.9e+02 4.3 0.0 21 44 60 83 57 88 0.89 4 14 1.1 1e+04 -1.2 0.0 26 44 106 124 96 130 0.86 5 14 0.0056 54 6.1 0.0 21 44 129 152 126 156 0.89 6 14 0.0015 15 7.9 0.2 21 43 157 179 154 185 0.90 7 14 0.00014 1.4 11.2 0.1 21 44 185 208 182 216 0.91 8 14 1.1 1.1e+04 -1.3 0.1 21 32 213 224 210 236 0.79 9 14 0.0076 74 5.6 0.1 20 43 268 291 266 295 0.77 10 14 0.055 5.3e+02 2.9 0.1 20 31 296 307 291 321 0.76 11 14 0.4 3.9e+03 0.1 0.1 20 41 352 373 347 385 0.79 12 14 2.4 2.3e+04 -2.4 0.0 26 44 386 404 375 409 0.82 13 14 0.05 4.8e+02 3.0 0.0 21 43 409 431 406 436 0.85 14 14 0.00032 3.1 10.0 0.4 20 44 437 461 431 467 0.91
Sequence Information
- Coding Sequence
- ATGCCTAGGAAGCAGCGGAAGCGAACAGACTGTGAGGTATGTGGCAAAGAAATGCTTCAGAAACAGCTCAAGCGACACCTTGCTACCCACTCTGGTGAGCGGCCGTACAAATGTGACATCTGCGACAAATTATTCACTCGGCGGGACGGCCTAGTTTCACATAAACTTATTCACACGAGTAGTCTACCGCATAAGTGCGATGTGTGTGACAAAGTGTTCCTTCTAAAGGAGAGCCTGCGGCGGCATATGTTTGTCCATACTGAGGGACGAGCACCCAAGCAACTTGGTAAATCGACCTCGGACATGCTGTGGAATGAGTGTGAAATATGCGGCAAAAAATTCCACCAAAAATATTACCTGCAGCAACATCTGTTAACCCACACTGGCGAGGAACCTTATAAATGTGATATATGTGGCAAAgcatttattcaaaaaaataacCTTCATAAACACGTCTTAACCCACACTAACGAGCGGccatataaatgtaaaatatgtGACCAGGTATTCAATCAAAAGATTACCCTGCAACGACACGAGTTCACGCACACTGGCGAGCGTCCAAACAAATGTGAAATATGTGGCAAACTATTTATTCAAAAGTCGAACCTGCAGCGCCATTTGATCACCCACACTGGCGAGCGCCCGTACAAATGTAGAATATGTGACAAAATGTTTGCCAACCGCGATTCCTTAGTTGAACATAAACTTATTCACAGTGTTGATCGTCCGCATAAATGTGACATGTGTGGCAAACAATTCATGTTGAAGAGTCGCCTAAAGCTACACGTTTTAGCCCACACTAGTGAGCGGCCGTACAAATGTGATATATGTGGCAAAGCATTTAAAAGGCAGAGTAACTTGAACGCGCACAGAGTCATTCACGATAGTGACCAACCGCACAAGTGCGAGATATGTGGCAAAAATTTCCCTCGCAAGCATGCCCTGAAGCTACACGTCTACACTCATACAGGTGGGTACCCATGCAAATGTGATGTATGTGGCAGAGCATTTTACCAGCAGTATCACTTGACTTTGCACAAACTCACTCACAGTAGTGAAGTGCCGCATAGCTGTGAAGTATGTGGAAAAAAGTTCCTTCAGAAGGGTGAGCTGCAGCTACACAGAATTACTCACACTGACAAGCGGTCATATAATTGTGAAATATGTGGcaaattattcatacaaaaaaCTAAAATGCAACAACACATGATCACCCACACTGGTGAGCACCCGAACAAATGTGATATTTGTGGTAAAACATATAAACAGCAGCATGACTTGAACTTGCACAGACTTACTACTCATAATAGTGAGCAGTCGCATAAGTGCGACATATGTGACAAAAAATACCGCCACAAAACTTCACTGCGGCGACACGTTGCAACTCACACTGGCAAGTGTTCATCAGAGGATACAATATGTGAATTTACAACCGCACCAGTGTGA
- Protein Sequence
- MPRKQRKRTDCEVCGKEMLQKQLKRHLATHSGERPYKCDICDKLFTRRDGLVSHKLIHTSSLPHKCDVCDKVFLLKESLRRHMFVHTEGRAPKQLGKSTSDMLWNECEICGKKFHQKYYLQQHLLTHTGEEPYKCDICGKAFIQKNNLHKHVLTHTNERPYKCKICDQVFNQKITLQRHEFTHTGERPNKCEICGKLFIQKSNLQRHLITHTGERPYKCRICDKMFANRDSLVEHKLIHSVDRPHKCDMCGKQFMLKSRLKLHVLAHTSERPYKCDICGKAFKRQSNLNAHRVIHDSDQPHKCEICGKNFPRKHALKLHVYTHTGGYPCKCDVCGRAFYQQYHLTLHKLTHSSEVPHSCEVCGKKFLQKGELQLHRITHTDKRSYNCEICGKLFIQKTKMQQHMITHTGEHPNKCDICGKTYKQQHDLNLHRLTTHNSEQSHKCDICDKKYRHKTSLRRHVATHTGKCSSEDTICEFTTAPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462238;
- 90% Identity
- iTF_01462238;
- 80% Identity
- iTF_01462238;