Tyan067309.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- -
- Assembly
- GCA_030247195.1
- Location
- CM058070.1:422451710-422453362[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5 1.4e+04 -1.7 0.0 26 45 158 177 153 180 0.80 2 9 0.0011 11 8.3 0.0 22 51 241 270 233 271 0.81 3 9 0.0013 12 8.1 0.0 22 44 269 291 265 295 0.89 4 9 0.005 48 6.2 0.3 21 45 296 320 292 325 0.89 5 9 0.23 2.2e+03 0.9 0.1 23 52 351 380 343 381 0.83 6 9 7.6e-05 0.74 12.0 0.1 23 52 379 408 369 409 0.85 7 9 0.0016 15 7.8 0.0 21 44 433 456 426 459 0.90 8 9 0.00041 4 9.7 0.1 21 52 461 492 457 493 0.88 9 9 0.0027 26 7.1 0.2 20 46 488 514 486 520 0.86
Sequence Information
- Coding Sequence
- ATGTTGGGAAAATATGGTGAAACACCGGAAAGTGACCGAAACCGAAATCAACCGCTGCCGATGGTACCGCCTCCACTCTATCCGGCACCATCCACAACATCCATAGTGAATAACCGATCAAACGAAACAACAGTAGCTACTGTGGTAAATTCACTGCCAACCATGCTTGGCAAAAGTGTGTCCGCTGGCCCGTCATCGACCGTAGTGGCAAGCAGTTTGGAATCGAGCGTTAAGCAACTTACCCCGCAATATCAGTGTCAGCTTTGTCTCAAGTGTTTCGAGAATGTGTCCGCTCTGTCGTTGCATCTAAATTCACACGAGCAAGAGTATCGCGGTACGATGAACTACAATGGACAGATTACTCCCGCACATACGATCAAAACGGAACCGCAATCGTTTCATCTGGTAGCACCACCGAACTACCCGGGTACCGTGCTGCAGGGTTTTCAGATCGTCACCAGCTCCGGCCAGGTGTGTCAAATTTGTCAGAAGGTTTTTAGTTCCGCTGAACAGTTTCATGCTCATATGAAGATTCATGAAAACGAATCCCGATATCGAGCATGGTATCAGTCTAATTCGGCTGGTGCGGCTCCTGTACAACCACCCAAGGAACCAGAGGTAGTAGAGGAAAACGATGGAAAACCGATCGACTGTATTGTGTGCCATAGCAAATTTCAAACCGCTGCACTATTGGCCGTGCATCTGCGCGAGCATAGCACTCAGAAACCGTACGTTTGTACCATTTGCGGAAAAGGTTTCATTCAATCTAACAATCTTTCTACACACATGAAAGTGCACTCTGGACAGAAACCTTTCAAATGCGATATCTGCAATAAAAACTTCAGCCAGTCCAACAATCTAAAGACACACGTAAGGACCCACACGAACGAACGACCCTACGCGTGTGCCATTTGTGAGAAACGGTTCAACCAGAAAAACAATCTGACCACACATATGCGAACCCACTCGCTCGTTTGTAAAGTCTGTCGGGTTCAGTTTCAGCATCCGACGGAACTATCCAATCACGTACGGATTTGCTATGCAGATCTTAAGCCAAACATTTGTACCGTGTGTAACAAGGTGTTCGTCAACAACGACGAACTGACGGATCACATGAAACAGCACAATCAGGTTAAACCACACAAGTGTCAGATCTGTCTAAAAACTTTCACCCAGTCGAACAATCTGAAAACTCACATGAAAACTCACATCTTCCAAGACCCCTTCAAATGTTCCTTCTGCTCGCGTTCGTTCCAGAATGACGAAGAATTCGCTCGTCATTCACTGGTGCATTCCTCCCCGAAACCGTTCAACTGCCCTTACTGTGGCAAACAATTCATTCAGTCAAACAATCTGAAGACACACGTACGAACCCACACTGGCGAGAAACCGTACAAGTGCTACATATGCGACCGATTGTTTAACCAGAAGAACAACCTCAACACCCACTTGCGCATTCATCAGGGGCTTAAGCCCTATCAGTGTACGGTTTGCGAGAAGCGGTTCAATCAGAGTAACAATTTGAACAAACACATTTATAAGGTTCACTGTCACGAGAAGGCAGACCAGCCCATCGGTACTGCTTCGACAGCTGCTGCTACCATTGGGTCAGCAGCAGACGTTCCGCTGGATGGTGTCGGAACGGCCAGCTGA
- Protein Sequence
- MLGKYGETPESDRNRNQPLPMVPPPLYPAPSTTSIVNNRSNETTVATVVNSLPTMLGKSVSAGPSSTVVASSLESSVKQLTPQYQCQLCLKCFENVSALSLHLNSHEQEYRGTMNYNGQITPAHTIKTEPQSFHLVAPPNYPGTVLQGFQIVTSSGQVCQICQKVFSSAEQFHAHMKIHENESRYRAWYQSNSAGAAPVQPPKEPEVVEENDGKPIDCIVCHSKFQTAALLAVHLREHSTQKPYVCTICGKGFIQSNNLSTHMKVHSGQKPFKCDICNKNFSQSNNLKTHVRTHTNERPYACAICEKRFNQKNNLTTHMRTHSLVCKVCRVQFQHPTELSNHVRICYADLKPNICTVCNKVFVNNDELTDHMKQHNQVKPHKCQICLKTFTQSNNLKTHMKTHIFQDPFKCSFCSRSFQNDEEFARHSLVHSSPKPFNCPYCGKQFIQSNNLKTHVRTHTGEKPYKCYICDRLFNQKNNLNTHLRIHQGLKPYQCTVCEKRFNQSNNLNKHIYKVHCHEKADQPIGTASTAAATIGSAADVPLDGVGTAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01462266;
- 90% Identity
- iTF_01462266;
- 80% Identity
- iTF_01462266;