Tyan013736.1
Basic Information
- Insect
- Topomyia yanbarensis
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_030247195.1
- Location
- CM058068.1:201776304-201787027[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-109 1.6e-104 351.5 39.6 1 299 198 489 198 490 0.90
Sequence Information
- Coding Sequence
- ATGAGTAGTGATATAAAACTTAACATAAGTGAGGACGAATACCGGGCCCATGGTACCAGCACCGGGCGGCCACCCCAGTTCGTCTACCAATCATCCTCTGACGACGAGGATGATGACGACGAACAGGGTGAGTTCTATAGTTTCGAAACGCCGACCGAACTGGATCCGCTAGCGCTGGATCTGACGGCGGAATTGAAAATTCGTGAATCCAACGAGGAGCTGAATGTGGATATTAATCGAAATGATCTGAGTGTTAAGAGCGATCGGTTGCACGAGGCTGTAAGCCTGGAGGGAGATTGTACAATGTTGTTAGATAGTAGTAACGGGTTAAGTAGTGATAGtgtttttgatgaaattgattCACCCGTGAATGGCGATCAGCGGCGGTTTAGTGCGGCGACTGCTGGCGAGGATGAGGTGGATCGTAGCTACGATAATAGCTATGCGGATAGCCAAAAGTCTGACCCGGAACATCACCTGTACGAACCGCATCGACAGTACCATCGACTGTCGGTGTGTCACACCGGGGACGAGTTCAGTTCCGACGAGGATGAGGCTTTCGTGGAACTGCTCGAGAAGGCGAATCACATAGCAGAAGCTCGACTGGCAGCCCGGCGGCAAGCACGTGCGGAGGCACGTGAAATCCGTATGCGTGAGTTGGAGCGGCAGCAGAAAGAACTGGAGCAAAATGCCGACCGCGTCTTTGACCTGCAGCAGCAATCCGTCGGTATGTCGGCTGCGGATAGCTCACTTGGATCCCGATCCGCACGTCTCACCGTCAACAACAGTGTCGTTCGAGGTAGTTCCCTTTCATCCCGAAGGAGCAGCGAAGATTCCCTGGAGGAAGAGGGTCGAAGTTTGCGAGACCTACGACATGAACTAAAGGATGTGGAAGAACGCTTCCGCAAGGCGATGGTCGCGAACGCCCAGCTAGACAACGAACGTGCCTCCCAGAGCTACCAGATTCAGCTGCTGAAAGACAAACTGGAAGAGATGGAGGAATCGCACGCCCAGCTTCAGCGGGAACACAAGGAGAAATGCCGGGATCATGATGCCTTGAAACGAGCCAACGACAAGCTGTCCGAGGAGCTGAAACTGGTGCAGGGTCAGCTGCAGGAACGGGACACGCTAATCGAGGAACAGGGCCTAGTGATCGTGACGGTGGAGAACGAGGACGGTTCCGATGCACGACGCGCGCTAGTCACAGTAGAGAACGCACAGCTGCTAGGTTCCGTGCAGGGTTCGTTAgATGTAAGGCTGAAACGGTTCGCCGAGGAAAAACTAGAGCTGCAAAACGAAGTCCAGACGCTGCAGCAACAACTAAAAGACCTTAAGACCAAGGGCAGGAAATACAGTACTCTAAACGGGGCGTTGGACGACGATGATTACGAAGATGCTCAGAgagAAGCCAACAAATTAATCACCGACTATAAATACAAACTGCAGAAAGCGGAGCAGGAAATTGCCAACCTGCAGGCCAGTCTGGCTCGGTCCGAGACGCAGGTGATTCGATACAAGAGTACCGCTGAAGCGGCAGAAAAGGCTGAAAGTGATCTTAAAATCGAAAGGAGAAAGCTTCAACGAGAGCCAATTATCACCCAGTTCTGGGACGAATGCCACTGTCAGTAG
- Protein Sequence
- MSSDIKLNISEDEYRAHGTSTGRPPQFVYQSSSDDEDDDDEQGEFYSFETPTELDPLALDLTAELKIRESNEELNVDINRNDLSVKSDRLHEAVSLEGDCTMLLDSSNGLSSDSVFDEIDSPVNGDQRRFSAATAGEDEVDRSYDNSYADSQKSDPEHHLYEPHRQYHRLSVCHTGDEFSSDEDEAFVELLEKANHIAEARLAARRQARAEAREIRMRELERQQKELEQNADRVFDLQQQSVGMSAADSSLGSRSARLTVNNSVVRGSSLSSRRSSEDSLEEEGRSLRDLRHELKDVEERFRKAMVANAQLDNERASQSYQIQLLKDKLEEMEESHAQLQREHKEKCRDHDALKRANDKLSEELKLVQGQLQERDTLIEEQGLVIVTVENEDGSDARRALVTVENAQLLGSVQGSLDVRLKRFAEEKLELQNEVQTLQQQLKDLKTKGRKYSTLNGALDDDDYEDAQREANKLITDYKYKLQKAEQEIANLQASLARSETQVIRYKSTAEAAEKAESDLKIERRKLQREPIITQFWDECHCQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948752;
- 90% Identity
- iTF_00948752;
- 80% Identity
- -