Tcin029230.2
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- MBD2
- Assembly
- GCA_959613345.1
- Location
- OY390709.1:30706729-30709197[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-22 2.5e-18 66.8 0.0 2 73 6 72 5 75 0.90 2 2 0.00071 4.8 8.2 0.0 29 73 122 174 94 177 0.85
Sequence Information
- Coding Sequence
- ATGAACGTGAATATCGAACGCAGGAAAACCGAATGCAACGCCCTGCCGAAGGGCTGGCAGCGCGAGGAGGTCCTGCGGAAAACGGGGCTCTCGGCTGGGAAGGTCGATGTCTATTACTATAGTCCCACCGGgaaaaaaattgagaataaGCCACAGCTAGCTCGGCAGCTGGGCGACGTCCTCGATGTATCAACATTTGATTTTCGTACTGGCAAATTATTACCACACGCCCAACAAATTTCAGTACAACGAACAGCGAGCTCCCTCAAACGAAAATTGCCCGCTGGAACGACGGCTATTTGTAATCCTACCAGTAGTAGTATGTCGTCAGCATTTCGCCATCATCTAGAACTCAGTCGAGGGCTTCGGAACGATATATCGCTTGTGCCCCCGATTCGGCAAACTGCTTCCATATTTAAGCAGCCAGTTACTGCGGTAAAAAACCAAGAAGGGAAGGTCAAACATGATCTAAAAAATGTGTCTCAGGAGAAGCCCAAACAACTATTTTGGGAGAAGCGCCTGGAAGGACTCAAGGCTTGTGATATCAGCGGAGCAGAGTATGAGTCCATAGATCTACCAAAAGGTATAAAGCCCGTAGGCCCAAACGTTGCCGAACATACCGTACTCCAGTCGGTTGCGACAGCTTTGCATGTCTCGAATCAGCCTGTAACTGGACAAACGGCATCTAAAAATGCCCTCACTACCAACTCCGGGGTGTTTCTTAACCCCGAGCAGCCCTTAATGCACGTGATAGGCATTACAGATGAAGACATCCGCAAGCAGGAGGAGCGCGTTTCCTTAGCTCGACGGAGACTTCAAGAGgctttaaaagtttaa
- Protein Sequence
- MNVNIERRKTECNALPKGWQREEVLRKTGLSAGKVDVYYYSPTGKKIENKPQLARQLGDVLDVSTFDFRTGKLLPHAQQISVQRTASSLKRKLPAGTTAICNPTSSSMSSAFRHHLELSRGLRNDISLVPPIRQTASIFKQPVTAVKNQEGKVKHDLKNVSQEKPKQLFWEKRLEGLKACDISGAEYESIDLPKGIKPVGPNVAEHTVLQSVATALHVSNQPVTGQTASKNALTTNSGVFLNPEQPLMHVIGITDEDIRKQEERVSLARRRLQEALKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717805;
- 90% Identity
- iTF_01049671;
- 80% Identity
- -