Tcin019047.1
Basic Information
- Insect
- Tolmerus cingulatus
- Gene Symbol
- bab1
- Assembly
- GCA_959613345.1
- Location
- OY390708.1:23263387-23266515[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.9e-13 1.8e-09 38.5 0.0 4 45 365 406 362 406 0.92 2 2 0.067 1.3e+02 3.7 1.1 4 20 498 513 497 513 0.93
Sequence Information
- Coding Sequence
- ATGGGCAGCAGCGAAGGACAAACCTACTGCCTGCGATGGAACAATCACAAGTCGAATTTGGTCGAGATTTTGGACGCCCTGATAAAAATGGAAAGCTACGTGGATTGCACCATCGTGGTGGACGATCAGGTGCAGTTCAAGGCCCACAGGGTGGTCCTGGCCGCGAATTCGCCGTACTTTCAGTCAATCCTCCAGGACGTCCCTATGGACCACTGCAGCATCCTCTTCCCCGGAGTGCAGGCATTCGAGATGCGCGCCTTGCTGGAGTACATGTACACGGGCGAAGTGAACGTGACTCAAAGTCAAATCcccaaaataatgaaaatcgCCGAGCAGCTGGAAGTTAAGGGACTGTTCGACATGACTGATCTTAAGGAGAAATTCAACAAGTTTGAAGAACCACCGACGCACTACCCGCCCCCAACCACTCCGACAGCGCCATCTTTCGCAGCCCCCAAGGACGGGGAGCATCAGCAGTCCTCGCCGGTGATCACGACGTCCACGAACATCACATCGGCGCAGAGCAGTAGCGCCTCCCCGCCGTACTCCTACAAGTCCCCGTACTCCAGTCTTTACTCGAAGAGTCCTGGACCCTCGACCTCGGAGCGGCACTCGCAGTGGCCCCCCATTTCGCCCCATTTGCCGACGACACTGCCCagcgccgccgccgctgccaTGCTGAGCTCCGTCTACGAAAGCGCCAGCGACATGAACCCCCTCAAAAGGAAGAAACTCTCCTCGATCTCGAGCATGCTGCAGTACCCGACTCCGAAGGACACGCCGATTTTAAGGAATGTCCTGGCACAGTCTCACGCGGCAGACTCATCCCAACCGATGCCTCTGATTTGCCAACCCGTGAAGCCCGAAAGAGCCGAGAAACCCGGCGTAAACAACGGCTGCAATGGATCTGAGTACTCTTCGGATAAGaaatcaaaatatgatgAGCCCCACTCTCCCTACACCGATAAATCATTTGAGGACGACGGTCTGGACTGTCCCCCTGCTTACCTGGGCGACTCCCGTCTGCCGCAATATTCGTCCCAACAGCAACAAAAGCCGGAGTGGAAACGGTACAAGCAATACACCAGGAGCGATATTTTGTCCGCCATCGAATGTGTGAGGAACGGAATGAGCGCCCTGCAGGCGTCCAGAAAATACGGGGTTCCATCCCGAACCCTCTACGACAAGGTAAAAAAGTTGGGCATAACTACGGGCAGACCGATGAACAGGACCATAAAAAGGAGCCCCAGCAGCGGCGGGGGCTCCTCTGGCTTCCAGTTCGGGATGTCCGGGAGTGGTCATCCCTACGGCCCAGGGGAGACGATGATCTCGCAGATGCACGAGCCGATGGACAGGGAGAAGGACCGGGAGCACCACATCCCCCCAACGATACCGCATCCAGCTGCGGCCCTTCTCGATCCAAATTTCCTGCAGCAAGCTTTCGAAGCTCGTGGCGGTGATATCGCTGGTAGGGAAGCTCTACACGCGATGGCGCTGGCAGCAGCCGCCCACGCTGCTGTTAACGGTATGTCGACAAGTCCTGGTACTAACGGGACTGCGCGATCGCCAAGCCCTGGTCTTGGCAAGTACCAAAAATCGCAAAGCCCGCATCCGAGCCTAGATAGAGAAAGAGATCGTGAGCGTGAAAGAGAAAGAGAAAGAGAGCAAGAGCGAGAGCGAGAACGAGAACGGGAACGAGAACGGGATCGTGAACGACAACGTGAGAGAGAAAGGGACAGAGACAGCGACAGGGAGCGAGAACGGGACCACCATATGGAGGAGGACGAGGACAAGGTCGAAGACTTATCGATGTCGCGGAAGGATGTCAGTCCTTCGCCCTTGCCGTCTCATCATTCCTACCTGCAGAGGGCGCCACATTCGCTCCCCCAGCACACTCCACCCCCGCAGCACCTGCAAACAGGGGGCGTTATCGTGCCGCCGATGACAAAAATCCCCACGAACACAGTCGAAGATTTCTCACCGGTCGAATGCAAGCGGGAGCTAGTTACGGACGACTCGAGGGACTag
- Protein Sequence
- MGSSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDVPMDHCSILFPGVQAFEMRALLEYMYTGEVNVTQSQIPKIMKIAEQLEVKGLFDMTDLKEKFNKFEEPPTHYPPPTTPTAPSFAAPKDGEHQQSSPVITTSTNITSAQSSSASPPYSYKSPYSSLYSKSPGPSTSERHSQWPPISPHLPTTLPSAAAAAMLSSVYESASDMNPLKRKKLSSISSMLQYPTPKDTPILRNVLAQSHAADSSQPMPLICQPVKPERAEKPGVNNGCNGSEYSSDKKSKYDEPHSPYTDKSFEDDGLDCPPAYLGDSRLPQYSSQQQQKPEWKRYKQYTRSDILSAIECVRNGMSALQASRKYGVPSRTLYDKVKKLGITTGRPMNRTIKRSPSSGGGSSGFQFGMSGSGHPYGPGETMISQMHEPMDREKDREHHIPPTIPHPAAALLDPNFLQQAFEARGGDIAGREALHAMALAAAAHAAVNGMSTSPGTNGTARSPSPGLGKYQKSQSPHPSLDRERDREREREREREQERERERERERERDRERQRERERDRDSDRERERDHHMEEDEDKVEDLSMSRKDVSPSPLPSHHSYLQRAPHSLPQHTPPPQHLQTGGVIVPPMTKIPTNTVEDFSPVECKRELVTDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00717661;
- 90% Identity
- iTF_01049779;
- 80% Identity
- iTF_01461275;