Basic Information

Insect: Tipula vernalis
Gene Symbol: -
Assembly: GCA_958295665.1
Location: OY282558.1:21698375-21701845[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00049 0.27 15.0 0.2 2 23 238 259 237 259 0.97

2 16 1.7 9.2e+02 3.9 3.4 1 23 319 339 319 339 0.81

3 16 7.7e-05 0.043 17.6 0.8 3 23 347 368 346 368 0.97

4 16 0.00023 0.13 16.1 4.4 1 23 380 402 380 402 0.98

5 16 0.00033 0.19 15.6 1.1 1 23 408 430 408 430 0.99

6 16 1.6e-06 0.00089 22.9 1.1 1 23 436 458 436 458 0.98

7 16 0.00086 0.48 14.3 0.6 2 23 499 520 498 520 0.96

8 16 0.0011 0.64 13.9 2.4 1 23 679 701 679 701 0.97

9 16 0.0023 1.3 12.9 0.6 1 23 707 730 707 730 0.93

10 16 0.073 40 8.2 0.1 2 23 788 809 787 809 0.96

11 16 0.00011 0.06 17.1 1.3 1 23 930 952 930 952 0.98

12 16 0.0016 0.86 13.5 3.3 1 23 958 980 958 980 0.96

13 16 3.6e-06 0.002 21.8 1.2 1 23 986 1008 986 1008 0.98

14 16 0.00012 0.065 17.0 0.9 1 23 1020 1042 1020 1042 0.98

15 16 0.00035 0.19 15.5 2.0 1 23 1048 1070 1048 1070 0.98

16 16 6.5e-05 0.036 17.8 1.7 1 23 1076 1098 1076 1098 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00049	0.27	15.0	0.2	2	23	238	259	237	259	0.97
2	16	1.7	9.2e+02	3.9	3.4	1	23	319	339	319	339	0.81
3	16	7.7e-05	0.043	17.6	0.8	3	23	347	368	346	368	0.97
4	16	0.00023	0.13	16.1	4.4	1	23	380	402	380	402	0.98
5	16	0.00033	0.19	15.6	1.1	1	23	408	430	408	430	0.99
6	16	1.6e-06	0.00089	22.9	1.1	1	23	436	458	436	458	0.98
7	16	0.00086	0.48	14.3	0.6	2	23	499	520	498	520	0.96
8	16	0.0011	0.64	13.9	2.4	1	23	679	701	679	701	0.97
9	16	0.0023	1.3	12.9	0.6	1	23	707	730	707	730	0.93
10	16	0.073	40	8.2	0.1	2	23	788	809	787	809	0.96
11	16	0.00011	0.06	17.1	1.3	1	23	930	952	930	952	0.98
12	16	0.0016	0.86	13.5	3.3	1	23	958	980	958	980	0.96
13	16	3.6e-06	0.002	21.8	1.2	1	23	986	1008	986	1008	0.98
14	16	0.00012	0.065	17.0	0.9	1	23	1020	1042	1020	1042	0.98
15	16	0.00035	0.19	15.5	2.0	1	23	1048	1070	1048	1070	0.98
16	16	6.5e-05	0.036	17.8	1.7	1	23	1076	1098	1076	1098	0.97

Sequence Information

Coding Sequence: ATGGAGCGATATACATTGGccataaaacaagaaaatggaTACGAAATTACGGAAAGCGGTATTATCAATGGCATTAGTAGCCTCGGTGAAAATATAACAATTGCCCAGTATGAAATCCAACCGCAACAACAGATTCATCATGCTACAATGATGATACAACATCCACAAATTATTATACACCAGCAAAGAATACCACAGCAGCACCAACATCATATAttgcagcaacaacaacatcacCTTGTACAACAGATCCAACATATAACGCCATCCTCGACCCCAAATCACCTACAACATCACacaattcaaatacataatgaAGACGAGTCTAATGAGGGTAATTCCATGTTGTATACAAATAATACACATTCGCAGTGTACTACGCCtcatatacaaatacaaattcatCACGCGGATGGAAGTAGGTCCGATTCAGTGCAGCACATACCAGCGGAATTAATGCAGGTGTCTAGCCCGTTAGAACTACATTCACCACATTATCATAATAATCAACATCAACAGATTATAATTCATCAGCCTATGACCACAATTGTAGAGGAACTGCAACCGGAGGAACTCGAAATAGGAcatcaagaagaaattattaCGATACCAgagcaaataatacaaaaagttGAATATCCAGAATTAGCTATAACACCGCAGCATCAGGAACAACAGTACCTATCGCAAGACAATATCAACATAAACATAGTATGTAAGGTGTGTAAGGAAAATTTTGTTGGAGTTGATAATTTTACCGAACACATGAAAACCCATATGCCGCACGAACAAGTGTACGAAGATGTTATGGGTGCCACTCGAATAGAAATGGTAGATTTATCAGAAACACTGAATATGGATAAAAGCGCATATCCATGCGCCTTctgtaacaaaaaatacatttggCATAAGTTCCTGGTGACGCATTCCAAATGTCATAAAACACCAGCTCCATTTATATGCACGATATGTGGCCAGAGTTTTGATTGTTTGTACTACGATCATATGAAAACTCATATTTTGAGTGAAGGGCGTATTTGTTCCAAATGTAACGAGAATTTCTCAACACTCAAAGCGCTAAAGCAGCATGTAAGGACCGTCCATAACCCACATCTAAGTGGAGACGCTAATCACCAGCACAAGTGTAGCATATGTGGAAAACATTATAAAGCGTTGTCATATTTAAAAGAACACGAACGAACTCATACTGGTGAGAAACCGTATAAATGTGATGTTTGTGGCAAAGCGTTCGCCAAATATGGTTGCTGGGCCGAACACAAAAAAACCCATTCGATTGTTAAAGCCTTTAAGTGCCCTATGTGTCCAAAAGCCTTCACGAAACGAAGATATCTAAAGGCACATCTCCTAAGACATCCAAAAACACTAGATCTCGATAAAATATTCGTTGAAGATAGAGACGGTGAATTGCCTAgcaggaaatttttatttgcaccGAATAAACCAAAACCTGTTCCAAAAGTGCAACCAAAATTGGAATGTCCAATATGTTATAAAGAATTTAAGAAGATGAGATATTTGCGGTCGCACGTTATACGCCATCCAGAAGATTTTGTACGACAGAAGCTTGGTTTAAAACCAGGAACGCCTATACCGCCTTTATTGCCGGCCGTGCTAAATCGAAAGTCCGCTATGATAGCAGCATCAGAAAATAATGAACAAGAGTTGACGAATATTCAGATTGAAACCAAACTCGAGATGTCATCTGAAGATGAATCGACTGACGATGAGATTATGGGTGAAGAAGAGGAGGAAGCCGTCGGTCTAGAAAAAGGGGAAGTCAAAGCCAATTTGGAGTATGCAGATaatgattttttcaataatGAAGGTTTTAACGAGGATGAGGAAGAATTTGATCAAAATACGGTGAAGCAACAAATTCCAAGCCCCGAGGAAGTTAATGGCAGTCCGCAGGATAGTATCAACAATAATATTGATGCAgttgataataatataaaaccGGCAGTTGAAGAAATGTTACCCATCCTTCCGGAAGCGCCGGCCGAACCAACCATTTTTTGTTGTACCATTTGCCAGAAGATATTCAAGCAAATCAAATTATTGCGAGATCATGAACAAGTCCATTACGGTGAAAATCCGTATAAATGCAGCTATTGTAACACGGTTTTTGTGATGTGGGCTCGCTACGAAGATCATATGACTTTTGAACATAGTGACTACCCGATTTTGTGCGATGCGGAtgatgagaaaaaatttaaaaatcttggtCGATATTTTAATACTGAGGAAAAGTCGTTTACATGTAGAACATGTGAGGATACATTTTTAACCGAAAACATGTTAGAGGAACACGAGGATATACATTTAGGTGAGCAACCATTAAAGTGTCAAGTATGTGCTAAAGATTTTGCGATACAATCAAAGTATGCGGAACATTTAAAAGCGCACGGTACAGAAGACGATATGTTTGAGAACGAGGACGAAGAACAAGAGGATGAGGAACCTCTAAAAAGCGAGGATGAAGTCGAAATTACAAACGAAAATGACATAAGTCAACGTAATGGCAACGAAGGGCGTGTGCTTCGAAGTCGAGCGAATAAAAATAGGATTTCGAATTTACGCAATAATCGCAGAAGCAAGTTGAGGcgaaagaaaaggaaaataatagaaaaagtaGAGTCTGAATGCGATAACCAAAGCAGTGATGAAAATCATAAAGATAGAATCGAACTCGAGAAGGAGCCGAACGAAGAAGAAGAAATCGAGGTGCAGGTGAAACAAGGAGTCAAGGAAGATTCCAAAAAACGGTTCAAATGTAAAATCTGTGGTAAACTGTATACAAGCCTTTTCTACCTAAAAGAACATTTATCGATTCACTCTGGTAAACGACCGCACAAGTGCGAAACATGTGGCAAAACATTTGCCGCCTCATCGTGTTATCGAGAACATTTGGAATTGCATTCGTCACAAAAAAATCATAAGTGTGATATGTGTGGTATGACCTTTGCAGTGGCTCGCTATTTAAAAGCCCATATGAGAAGACATGTACAAAAATCACGCCCGGATGgtggtaaaaaatataattgccCGCAATGCGAAAAGAAGTACCAATCTAAGACAACGCTGGTTGAGCACATGAAAATTCACACGGGTGAAGCACCGTTTACTTGTAGTTATTGTGAAAAAGTATTCATGCTCACATCATCTTTTCGCGATCATATGCTTAAACACGAAAATGTCGAAATGCATCAATGTCCATTCTGCCCAAAAAGCTTTATAAAAGCTCGTTACTTACAGCAGCATTTGGTGCGGCACATTCAAAAATTGGACACCGAAGATATTGCAGATGGGGCAGCTGATCCGAAAAACAATGACACCAAAACCCATTTTGATCAAGAGTTCCAAGAAAGTACGAGCAGCAGTAGTGATTCAGATTCGgaagatgatttttttaaaatgctaccGCCTGGTGATGGTCAAACAgttgtgtaa
Protein Sequence: MERYTLAIKQENGYEITESGIINGISSLGENITIAQYEIQPQQQIHHATMMIQHPQIIIHQQRIPQQHQHHILQQQQHHLVQQIQHITPSSTPNHLQHHTIQIHNEDESNEGNSMLYTNNTHSQCTTPHIQIQIHHADGSRSDSVQHIPAELMQVSSPLELHSPHYHNNQHQQIIIHQPMTTIVEELQPEELEIGHQEEIITIPEQIIQKVEYPELAITPQHQEQQYLSQDNININIVCKVCKENFVGVDNFTEHMKTHMPHEQVYEDVMGATRIEMVDLSETLNMDKSAYPCAFCNKKYIWHKFLVTHSKCHKTPAPFICTICGQSFDCLYYDHMKTHILSEGRICSKCNENFSTLKALKQHVRTVHNPHLSGDANHQHKCSICGKHYKALSYLKEHERTHTGEKPYKCDVCGKAFAKYGCWAEHKKTHSIVKAFKCPMCPKAFTKRRYLKAHLLRHPKTLDLDKIFVEDRDGELPSRKFLFAPNKPKPVPKVQPKLECPICYKEFKKMRYLRSHVIRHPEDFVRQKLGLKPGTPIPPLLPAVLNRKSAMIAASENNEQELTNIQIETKLEMSSEDESTDDEIMGEEEEEAVGLEKGEVKANLEYADNDFFNNEGFNEDEEEFDQNTVKQQIPSPEEVNGSPQDSINNNIDAVDNNIKPAVEEMLPILPEAPAEPTIFCCTICQKIFKQIKLLRDHEQVHYGENPYKCSYCNTVFVMWARYEDHMTFEHSDYPILCDADDEKKFKNLGRYFNTEEKSFTCRTCEDTFLTENMLEEHEDIHLGEQPLKCQVCAKDFAIQSKYAEHLKAHGTEDDMFENEDEEQEDEEPLKSEDEVEITNENDISQRNGNEGRVLRSRANKNRISNLRNNRRSKLRRKKRKIIEKVESECDNQSSDENHKDRIELEKEPNEEEEIEVQVKQGVKEDSKKRFKCKICGKLYTSLFYLKEHLSIHSGKRPHKCETCGKTFAASSCYREHLELHSSQKNHKCDMCGMTFAVARYLKAHMRRHVQKSRPDGGKKYNCPQCEKKYQSKTTLVEHMKIHTGEAPFTCSYCEKVFMLTSSFRDHMLKHENVEMHQCPFCPKSFIKARYLQQHLVRHIQKLDTEDIADGAADPKNNDTKTHFDQEFQESTSSSSDSDSEDDFFKMLPPGDGQTVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01458865;
90% Identity: iTF_01456680;
80% Identity: -