Tver082915.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- PAXBP1
- Assembly
- GCA_958295665.1
- Location
- OY282559.1:134407047-134411113[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-33 1.4e-28 103.7 0.3 1 272 655 866 655 868 0.93
Sequence Information
- Coding Sequence
- atgagtttatttcGTAAACCAAAAAAGCCTATACAACGTCGTGTGTTTAGTGGATACAGCGATGAGGAGGACATAGAAAATAATGATACTGCATTGGGTAGCGGCAATCAATCGCATCGGGATGAGAAAATGCAGATAGACGACCATGGAGGACACGACAAATCGAATTCACATTCATCCAGTAGGGATCGTAGTAATAAAAAAGATAAGAAAAGTAGCAGCAGTAGTGCAAATCATATTAGTGGTAGTGTTGGAGGTAGTTCCAGTAGCACCGGCAGCAATGCCAaagaaaaatctcaaaatataaCAGCAAAAACATCCTTATTAAGTTTTGATGATGAAGAAGAAGGTGAAGTATTCCAAGTAAAAAAATCATCACACAGTAAAAAAGTGATGAAAATGCTCGATAAAGAACGCCGAAAGAAAAAACAtcataaatcatcaaattcagAACGTAGCGATACGAGTAATAATGGCAATAGTTGCATATCTTCGACGCAAGACTATCACAGAACAATGTCGTCGTCACACGGCTCGACAGGAGGGAAGAGCGGTGGCGATAATCATTTTAATGATTTACAGGAATCtgatacaaataataaatttaataaacggaataaaaatgaaaattctaattctaatgtACAAACAGAAATTCGCACAGACGACTTTGTGCTGGTCGTTAAGAAAACAGAGCCTGAAAATTTAATTCTCAATGGTCGGGCTGCATTGTGTGCTGGCCGTGATGACATGTCATCCGAAGAAGATGATGTTGAAAGTGAAACGGAAATTAAACATACTACTAGTGCGCATAAATTTAATCATccggataattttaaaatggtgcTTGAAAGTGGCGCAATTCCAGATGCAGCTATGATTCATGCAGCTCGAAAAAGGCGACAGGAGGCACGTGAACAAAgtgAATTCATTCCAATCGATGAACCACAACCGGATAAGAAAAGTACTCGTTTGATACGCGACGACGGTGAAGATGATGGTTCCGATGAAGAGGAACGAGTTGATATGTCCGCAATAACGGGTATCAAAGAACGTGAAGAAAGGCGTGAGCAATTTTATTCGGCGCAACAAGAATatTCTGGTGAAGAATCGGATCCTGGTATGAACGAGTGGGAAAATCAACAAATTCGGAAAGGAGTGACGGGAGCCCAATTGGTTACGGCACAACAAGAATCGGTATTTTCACAATTCATGATTCAACCGTCCAGTTCTTCACTTACCAATGATCATTTATTATCGACTGGGGCCCTCTTGGAACAGGCATATGCCAAAGGTTGTCTAGAAAAGCCGCGACAAGTATTAATTTCAACACAGCTTAATGAACAAAAACCATCTGGACCGCGAATGCCCGCtgaagttttacaaaatttacgtGATCGTCTCGTTAAGCTTaacgaaataaatcaaaagcaTTGTGATGATATTGAACGACTGACGCGTGAAATGAAATTGGCCGAGATTGAGGAAATTGATTGTGAACATAAAGCACCGGTGGCAGCCACTAAATATCGGTTTTATCAGGAGATGAAGTGTTACATATCGGATTTGGTAGAGTGTTTTGATGAAAAACTGCCGGTTATATGTGATTTGGAGAAGCGTGCTATAACGCTAATGGCTAAACGAACACTATTATTTGTTGAGCGAAGGCGACAAGATGTTCGGGATCAGGCCAAGGAGATGACAGATCAGTCGAAATCTGGCATACGTAAAACCGGCGGCGATGATGAGGAACATACACGTCGTGCTGCAGAACGTGAAGGTCGCCGAACAAGGCGTCGGAGGGATCGAGAACGTAGCGAGATGAATGAAACTCATTTGGACGGGATGTCAAGCGATGATGAAATAGCCGACCATGAAGTAACGACATATAAGGCAAATTTAGATCAAATTCAGGTGGAGTCCGAAGAAGTATTTAACGATGCGTCCgaagaattttatcaaatcgatgaaatcttaaataaattcgATGAATGGAGAAAATTCGATATGGATTCATATCGAGAGGCTTACGTAACAATATGTCTACCGAAAATTATTGGGCCgataattcgattaaaattaatcacatGGTCACCGTTGACCGAGGTCTCAGtcgatatagaaaaaatgttatGGTATAATATCGTGATGAAATATGGTTACAGCATGACTGAAACAGAACAGCAGCTATCGGCTGATCCTGATGTCCGATTTGTTCCATCgattatagaaaaaataattttaccaaaaattaccgaaCACATTGAAAATTGTTGGGATCCTTTATCGACGacacaaacattaaaattggtagGACTTATCGCACGCCTGGGAAGAGAATATCCATCGCTGAGGCCCTCATCTAAAATGCTTAAAACACTGTTCATAGCTATActcgataaaatgaaattatccctcgataatgacgtatttattccGATATTTCCAAAATATATGCAAGAAGCAAAAACATCATTCTTTCAACGACAATTTTGTAGTGGGCTCAAgctttttagaaatttcataaGTTGGCAAGGAATTCTATCGGACAATGTACTGAAAGAGATTGCCCTGTTATCCCTTCTCAATCGGTATCTCCTTTCGGCGATGCGAGTATGTACTCCATTCGATGCGATCGCAAAGGCATCaattattgtaaatacaatTCCACGAGTATGGTTGCATCCGGATACGGGCGTCCTTGATAGTATGGAAAtgtttgtaacatttttaaagaatatttcgaatggtttagaaaagaaaaattcaagtCATTTAGAATCTATTgagaaaattacaacaattttattaagacTTCATGCAACACTATAA
- Protein Sequence
- MSLFRKPKKPIQRRVFSGYSDEEDIENNDTALGSGNQSHRDEKMQIDDHGGHDKSNSHSSSRDRSNKKDKKSSSSSANHISGSVGGSSSSTGSNAKEKSQNITAKTSLLSFDDEEEGEVFQVKKSSHSKKVMKMLDKERRKKKHHKSSNSERSDTSNNGNSCISSTQDYHRTMSSSHGSTGGKSGGDNHFNDLQESDTNNKFNKRNKNENSNSNVQTEIRTDDFVLVVKKTEPENLILNGRAALCAGRDDMSSEEDDVESETEIKHTTSAHKFNHPDNFKMVLESGAIPDAAMIHAARKRRQEAREQSEFIPIDEPQPDKKSTRLIRDDGEDDGSDEEERVDMSAITGIKEREERREQFYSAQQEYSGEESDPGMNEWENQQIRKGVTGAQLVTAQQESVFSQFMIQPSSSSLTNDHLLSTGALLEQAYAKGCLEKPRQVLISTQLNEQKPSGPRMPAEVLQNLRDRLVKLNEINQKHCDDIERLTREMKLAEIEEIDCEHKAPVAATKYRFYQEMKCYISDLVECFDEKLPVICDLEKRAITLMAKRTLLFVERRRQDVRDQAKEMTDQSKSGIRKTGGDDEEHTRRAAEREGRRTRRRRDRERSEMNETHLDGMSSDDEIADHEVTTYKANLDQIQVESEEVFNDASEEFYQIDEILNKFDEWRKFDMDSYREAYVTICLPKIIGPIIRLKLITWSPLTEVSVDIEKMLWYNIVMKYGYSMTETEQQLSADPDVRFVPSIIEKIILPKITEHIENCWDPLSTTQTLKLVGLIARLGREYPSLRPSSKMLKTLFIAILDKMKLSLDNDVFIPIFPKYMQEAKTSFFQRQFCSGLKLFRNFISWQGILSDNVLKEIALLSLLNRYLLSAMRVCTPFDAIAKASIIVNTIPRVWLHPDTGVLDSMEMFVTFLKNISNGLEKKNSSHLESIEKITTILLRLHATL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457342;
- 90% Identity
- iTF_01455763; iTF_01053167; iTF_01458387; iTF_01054333; iTF_01051935; iTF_01457342; iTF_01454841;
- 80% Identity
- -