Tlat002211.2
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- Rfx2
- Assembly
- GCA_963932295.1
- Location
- OZ010736.1:1289469-1305687[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-37 4.2e-33 114.9 0.1 3 78 269 344 267 345 0.97 2 2 4 3.9e+04 -4.0 0.0 25 30 693 698 678 708 0.59
Sequence Information
- Coding Sequence
- ATGGCCGCGAGATTAGCGACTCaacgaaattttataaaaattacccAGGACAATTCTTCACAGGATACAATGACATCGCCGACTAAATCACAAAACGGTGAAATTGTAACGACAACAAATGGTCAAACGACTACTATTCCAATACAGCATGTACTTCAGCAGaaaaaaataattctacaaACGGGAAATTCTGGTGTGTCAGTGATTGATGTTGTGCCGATTGAAAATTCTGATTCAAGTAATGAATCGCAATTGACGGTACAAGTTAAAGAGGATGCCGATAGTCCAACTACTAATGGAGGGCAACAAGTTACAGCACAAGTTGCAGTTGTGCATGCACAAAGTCCTATCGATGGAACACCACATTATATTACAGTTACAGCCGAAGGTACCGTGAGATCGTATGCGCCCATAACAACAGTTGTGTCCTCTCAAGATTCAGTGCCGCCACATTCATATCATGTTCAATACGTTGATTCTGACTTGTACACAGCAACAGGACAAGCTCAAACACAAAtGGCGTATCCTGTATATACTGTGGGGGATTATTCAACAAACGGACAACAGTATTATGCATCAACCGGTAATTATGGTAGCTCATCATCAAATAATAGTTCTAGTACATATAGTATTGTACCTGTAGATGATACAATTTTGACATCACAACCAAACGATTCACCGCAGAGTATTTCAGCGGAGGTAGCTTATATCCAAGGTCCGCAATCGGGGTCTAATGCTAACAATATTTCAATCCCTGAAACAGAATCAACTCCTAATTTATCGCATGCGACACGTGTATCCCCAGCTACGGTTGCATGGCTTTTGGAAAACTACGAAACTGCCGAGGGTGTTAGTTTACCCCGGTCCACTCTTTACAATCACTATATGCGACATtgcaatgaaaataaattggatgCGGTAAATGCAGCCAGCTTTGGAAAATTAATACGATCTGTATTTACGGGTCTACGAACACGACGTCTTGGCACACGAGGTAATTCAAAATATCATTACTATGGTATACGCGTTAAACCGGGATCACATTTAATGTCTGCACTCGATGAGAAGCAACCACAAAATGGCGCCGCTACCTCCAACTCAAATATAAATAGTAGCAACGTCACAAGGAATAATCGAAAATCAGGTTCAAAACCAGAGACATATGAAGCATGTTCACAGTATTTAGGAGATGGTTCACGAGCTATTCCACTATTTCCTTCAATCGATATAACACAACCATTCCCCGATGAGATCACGCTTGAAGATGTTGATACATTGCGTTCAATATATCGAGAACATTGTGAAGCATTTCTAGatgctattttaaatttagaatttagtACGGTTGAATCATTGTGGCGTGAATTTTGGCGTGCACAAGATAATAATAATGGAGACGAGTGcgaagaagaaaaatatttaagcaaATCAAAGCTCTACATACTATGCCAATGTGATTCTAtccaaaattttataagacaagtggatttggcattttatcaaaatatggtTGAAGTGCTTATACCGGATGTTTTACGGCCGATACCAAGTTCATTGACACAGGCAATACgaaatttttcgaaaaatttgGATAATTGGCTTACAACTGCAATGGCTGGATGCCctgataaaataatacaaataaaactatCGGCTGTGCAGGCATTTGGTCAAACTTTGCGACGATATACGTCTCTTAATCATTTGGCGCAAGCGGCTCGAGCAGTATTACAAAATAGTTCGCAAATTGCTCAAATGTTGAATGATTTGAATCGAGTTGATTTTCACAATGTACATGAACAGGCATCATGGGTATGCCAATGTGATACGAATACGGTACAAAGATTAGTAAATGATTTTAAGGCAGCACTGCAGCAACAAAACTCATTAGAACAATGGGCTTCATGGTTGCGACTCGTTGTCGATACGGCACTTGAAGAATATCAAGGTAAACCAAGCTATGCAACAGCTGCACGTCAATTCTTGCTAAAATGGAGTTTTTATTCATCGATGGTAATACGCGATTTAACATTACGATCAGCTGCTAGTTTTGGTAGTTTTCATTTAATCCGCCTGCTATACGATGAATACATGTTTTTTATCGTCGAACACAAGGTAGCCCAAGCCACCGATACCAAACCAATTGCTGTTATGGGAGAATTCAACAAGGTTTCATTGCCATTTCAGCACCCGGACGATATGCACCAACATGATAATCTTATGTTCCCAAatgaattacatttaaaaattgaaccCGAAACAAAGCGGATGCGAAGTTAG
- Protein Sequence
- MAARLATQRNFIKITQDNSSQDTMTSPTKSQNGEIVTTTNGQTTTIPIQHVLQQKKIILQTGNSGVSVIDVVPIENSDSSNESQLTVQVKEDADSPTTNGGQQVTAQVAVVHAQSPIDGTPHYITVTAEGTVRSYAPITTVVSSQDSVPPHSYHVQYVDSDLYTATGQAQTQMAYPVYTVGDYSTNGQQYYASTGNYGSSSSNNSSSTYSIVPVDDTILTSQPNDSPQSISAEVAYIQGPQSGSNANNISIPETESTPNLSHATRVSPATVAWLLENYETAEGVSLPRSTLYNHYMRHCNENKLDAVNAASFGKLIRSVFTGLRTRRLGTRGNSKYHYYGIRVKPGSHLMSALDEKQPQNGAATSNSNINSSNVTRNNRKSGSKPETYEACSQYLGDGSRAIPLFPSIDITQPFPDEITLEDVDTLRSIYREHCEAFLDAILNLEFSTVESLWREFWRAQDNNNGDECEEEKYLSKSKLYILCQCDSIQNFIRQVDLAFYQNMVEVLIPDVLRPIPSSLTQAIRNFSKNLDNWLTTAMAGCPDKIIQIKLSAVQAFGQTLRRYTSLNHLAQAARAVLQNSSQIAQMLNDLNRVDFHNVHEQASWVCQCDTNTVQRLVNDFKAALQQQNSLEQWASWLRLVVDTALEEYQGKPSYATAARQFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMFFIVEHKVAQATDTKPIAVMGEFNKVSLPFQHPDDMHQHDNLMFPNELHLKIEPETKRMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458084; iTF_01454604; iTF_01455404; iTF_01054062; iTF_01459215; iTF_01051665; iTF_01052918;
- 90% Identity
- iTF_01458084;
- 80% Identity
- -