Thel046385.1
Basic Information
- Insect
- Tipula helvola
- Gene Symbol
- salm
- Assembly
- GCA_963556165.1
- Location
- OY744482.1:1865209-1872066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.17 62 7.1 0.1 2 20 120 138 119 140 0.89 2 8 1.1e-05 0.004 20.3 1.0 1 23 520 542 520 542 0.98 3 8 3.9e-06 0.0014 21.7 1.9 1 23 548 570 548 570 0.98 4 8 1.4 5.3e+02 4.2 6.3 2 23 926 947 926 947 0.97 5 8 4.7e-07 0.00017 24.6 0.9 1 23 953 975 953 975 0.98 6 8 0.0025 0.95 12.8 0.7 2 23 986 1007 986 1007 0.97 7 8 0.048 18 8.8 3.3 2 23 1303 1324 1302 1324 0.97 8 8 1.2e-05 0.0046 20.1 2.6 1 23 1330 1352 1330 1352 0.99
Sequence Information
- Coding Sequence
- ATGATTGAGATTGGAATCAATAAATATGGAATTCatcagcaacaacaacaacaacatagtGCAAAGGACGAATTTGAAGAAGAAAATGATTCAAGTTCGTGTGATTCTGAGATGCAATCAGgTAACAACGACCAACTAAATGGATCATGtaataatgatgaaattttaataaaatcgagcATTATTGATAATAAAGACGACaacgacgacgacgacgacgagataaataattttaacataaaagaagaaaatttagaCGACCAACAAgaaaccaataataataataataacaataatattgttaataataaaatgaccGCGAGTACAACAATAAATGATAAGAATTTAACACAAATGACATGCAAACAATGCAACAAGGAATTTGATACCGAACAAGAAATTATCGATCATCGTACGGTTTGTGAAAAATTTTCGGACGATAATATGAATCAAGATcaaattttaagtaataataataataataacaacaataataacataaatattaataataatagtggtAGTGATATAAATTGGAAggagaataatattaaaaacgaAACTCCTGACGAGGAAGACGATTTATTAGAGGACGATTGTGATATGACACAGCACGCATCGAAAAATGATGAATGTGATAATGATGAGGATGGTGATCGACGATCACCCAATACAATAGGTGGACCACCACTATATCCACCAGCTGGTGGACCACCACCCTTCTTACCTTTCATGTTTGAAGCATTCAAGAGTATGGGTGGTGGTGTTGGGCCAAATGCGATGGCCGGATTAAATCCTAATTTAAGTAGCGAGGAAGCattaaaagaattttcattgttacaatcaaaattatttgcgcTCCAACAGAATCAAATGTTGCAGTTACAATTTATTCAGCATTTACAATCCTATCTTGCGGTTAATCCACAACATCAATTTGCTGCGCAAATGATGGGCATGCATCATCCTGGGATGATGGATCCGGATATAGAATTAAATAAACCGATTGAGCATGATCATGCGCAGTCAATTATCGATGACGATCTAGAGGATTCTATTAAACCGGAGAATGTAATTAAGAAAGAACCAAATGAGAacgacatttttaataaaaacagtaAAGTTTTGAGAAGTTCAACGCCGCACCAAACGGGACAGGATACACGATTCCCAgaagagtttaaaaaaattaaactaagttcACCAATTACGACACCTACTTGTAGTAGCCCGTCGTTGCatcaacaacagcaacaattgCAAAAATCGCAAAATATAGCGAATCAGCCGATCATGAGTGACTGCAGTGGAAATACGCCAACCTCATCGGCATCATCACCATATCATTATAGTTCATCATTAGCTTCAACGATTATAAAAAATCATGATCCTCTGCCATCAATAGATGCACCAAATTCCTTAGAAATGTTGCAAAAACGCGCCCAAGAAGTATTAGACTCTGCATCGCATGGCCTTCTAGCTGGGAATTTGGCCGATGAGCTAACATTTAGGCGTGATAAATCATCGTCACCTGATTTTAAAGGCAATGAATTGAAACACCGTTGCCGATATTGTGGCAAAGTGTTTGGCAGTGATTCCGGTCTTCAAATCCACATTCGATCGCATACAGGCGAACGTCCGTTTAAGTGTAACGTGTGCGGTAGTCGATTTACaacaaaaggaaatttaaaagttcaCTATCAACGACACACTTCAAGTTTTCCACATATCGAAATGAATCGTAATTTATCACAAGAAAATATTGACAAGTATCATCAGTATTTATTGTCTAAATCACAATCACCATCGGCGACTGCCTCGGCTCCACCAATACCGGGTACCTCAAACGCAAATCCATTTCAATTGCCCGTTCCTATACCGTTCCCGCAGGATATACGATCACAGTTATCATTTTATCGGCCTCCATTGGATATATTGAAACAATTGGGTGGCCATGCGGCCAATGCTTTTCCGTATGGCATGGTGGGTGGAGTTATTTCGCCCCAATTGAATCCAAATGGTGTGCCAGCTATTGTGCGGGAGAATCCAAATGAACAAGATGAACCGActgatttaagtttaaaaaaacctACAAATCAAAGtagtagtaatagtaataatcataatagtagtagtaataataatagtggTAATAATAGTATTAATAATAGTGATATTGATATGGAGAAACCTATTTTGGTGACACCGGAGAAATTATTACTTAAAAATACGGATGAATTATTAAtacatcaacaacaacaacagcaacaaccaCGTAGTGGTACCACAACTCCAATGTCGACCACATCGGTTGGTGGCCAAAGccaaagaaataataatagtagtagCATCGGCAGTAATTTAAATGAACGTGAACGTCGGTATTCACGTGGAACGCCGTCAAGTGACGACGATTGCCAAATCACAAGTAAATTAATTGATAATCAATGCGACGATACAATACAAGATCAACCCGAAAATTTATCATCGAAGGATTCCACCTCGTCGAAATTATCCGCGTCCTCGTCCACCACGCCAACATTGTTACAAAGTAAGACACGATGTAATCCAaatgaattcattttaaatcatcaaaattttcgTGATAGTATGTTACCGATAAAAAatccatttataaattcttcCCTTCTCCCACAGCTGACAGAAAAAAATGACAATTCATGGGAGAGTTTTATCAGCATCACAAAACATACGGAATCAGCAAAACTACAAGCGCTAATTGATAGTGCTGATAGTAAATTATCCGATTCAAATGAATGCTTTTTCTGTCATCGTACTTTATCATGTAAAAGTGCACTTCAAATGCATTATCGTACGCATACCGGTGAAAGACCGTTCAGTTGTCGCATATGCGATCGGGCATTCACCACCAAGGGTAATCTAAAAACTCATATGAGTGTACACCAAATAAAAACCCCAATGCGTACCTTACCCGAATGTCCGGTATGTCATAAACGCTATTCGAATGTGCTCGTATTACAACAACATATACGACTGCATACGGGCGAACAGCCTGATTTAACACCCGAACAAATTGATGCGGCCGAAGTACGGGAATTCCAACCGCTGTTCCCCGATTCATTTGCAAATCGgatgaataattttgattttaACGAAGATGATAATACAATATTCGATGAAGAACGTTGTTCCACCGATTCAGAATCAATAAAATCTGAAACACCTCTAACGTCTACACCGTCAATAAATCGGATCCGATTAAATAGCCATCACAGTACcagtaataatcatttaaattcgGATTCGGATAATAATCATCGTGATACAATAACAAATAACGATCTAATAAAACCAATACAATTAACACGTCCTGCGACTACAACACCAACACCAATACCAACACCTACGCTAAATAATAACCGTATTATGAATTCATCACCGCTATCCGCTCTTTCATCGTCGAAAATACCTCAACaaaaccaccaccaccaccaccacaatCACCATCACCTCGAGAATTCAAATAAGTTTCtacacaataacaataatagtcTTAACCATCGTAATAAGAATGACAAGAGTCCCGATTTTTTGACGACGAGCTCGACACACAATTCACAATCATCGCTCGATTCGATGCAATCGAGTGTACAACAGCACCACTCGCAATCACAGCAAAGTCAACAGCAGCCTCTATCACATCACCAGCCGCAACAATCACCTGTATTTTTGGgtacaaaaatgtttcaagGCCATTCAAAATTTGGTATGCTACCAAATTTACCGATGATCGGCAACGACAATTTCAATAGCATTAATCCGGAACAATCATCGCTGAACAATACGCTTATCTCATTGGCGCATTCTGTTATGCCGGCTGGACCGTTCAATACGTTCGGATTAACAGgtATTCGCGGTAATACAACCTGTAACATTTGTCTGAAAACATTCCCATGTCATTCTGCACTTGAAATCCACTATCGGAGTCACACAAAAGAGCGACCGTTTAAGTGTTCGTTCTGTTCGCGTGGTTTTTCAACAAAGgGTAACATGAAACAACATATGTTGACACATAAAATTCGCGAAATGTCTCAGTACCAATTCCCAagcgaccaaaactatcaaaattccaaaatgtacGATAGTAAATCTCCGATGAAACACAAATATCATTTGGGTCACGGGGACGATCGTGAAAATGATAATTACTTGCGTAACCAAAACAGTAATTCGCAGTCATCAGATCGAGACTCAACAAATGGTCATCATCCGGTTTCAAAAGAATCAATGCTCAAACGATCGAGTAACGATGATGACCAAACAGTACTGAAACAATCAAcTGCATCATGCTGTTGA
- Protein Sequence
- MIEIGINKYGIHQQQQQQHSAKDEFEEENDSSSCDSEMQSGNNDQLNGSCNNDEILIKSSIIDNKDDNDDDDDEINNFNIKEENLDDQQETNNNNNNNNIVNNKMTASTTINDKNLTQMTCKQCNKEFDTEQEIIDHRTVCEKFSDDNMNQDQILSNNNNNNNNNNININNNSGSDINWKENNIKNETPDEEDDLLEDDCDMTQHASKNDECDNDEDGDRRSPNTIGGPPLYPPAGGPPPFLPFMFEAFKSMGGGVGPNAMAGLNPNLSSEEALKEFSLLQSKLFALQQNQMLQLQFIQHLQSYLAVNPQHQFAAQMMGMHHPGMMDPDIELNKPIEHDHAQSIIDDDLEDSIKPENVIKKEPNENDIFNKNSKVLRSSTPHQTGQDTRFPEEFKKIKLSSPITTPTCSSPSLHQQQQQLQKSQNIANQPIMSDCSGNTPTSSASSPYHYSSSLASTIIKNHDPLPSIDAPNSLEMLQKRAQEVLDSASHGLLAGNLADELTFRRDKSSSPDFKGNELKHRCRYCGKVFGSDSGLQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHYQRHTSSFPHIEMNRNLSQENIDKYHQYLLSKSQSPSATASAPPIPGTSNANPFQLPVPIPFPQDIRSQLSFYRPPLDILKQLGGHAANAFPYGMVGGVISPQLNPNGVPAIVRENPNEQDEPTDLSLKKPTNQSSSNSNNHNSSSNNNSGNNSINNSDIDMEKPILVTPEKLLLKNTDELLIHQQQQQQQPRSGTTTPMSTTSVGGQSQRNNNSSSIGSNLNERERRYSRGTPSSDDDCQITSKLIDNQCDDTIQDQPENLSSKDSTSSKLSASSSTTPTLLQSKTRCNPNEFILNHQNFRDSMLPIKNPFINSSLLPQLTEKNDNSWESFISITKHTESAKLQALIDSADSKLSDSNECFFCHRTLSCKSALQMHYRTHTGERPFSCRICDRAFTTKGNLKTHMSVHQIKTPMRTLPECPVCHKRYSNVLVLQQHIRLHTGEQPDLTPEQIDAAEVREFQPLFPDSFANRMNNFDFNEDDNTIFDEERCSTDSESIKSETPLTSTPSINRIRLNSHHSTSNNHLNSDSDNNHRDTITNNDLIKPIQLTRPATTTPTPIPTPTLNNNRIMNSSPLSALSSSKIPQQNHHHHHHNHHHLENSNKFLHNNNNSLNHRNKNDKSPDFLTTSSTHNSQSSLDSMQSSVQQHHSQSQQSQQQPLSHHQPQQSPVFLGTKMFQGHSKFGMLPNLPMIGNDNFNSINPEQSSLNNTLISLAHSVMPAGPFNTFGLTGIRGNTTCNICLKTFPCHSALEIHYRSHTKERPFKCSFCSRGFSTKGNMKQHMLTHKIREMSQYQFPSDQNYQNSKMYDSKSPMKHKYHLGHGDDRENDNYLRNQNSNSQSSDRDSTNGHHPVSKESMLKRSSNDDDQTVLKQSTASCC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01053832; iTF_01052679; iTF_01054769; iTF_01459001; iTF_01457897; iTF_01460643; iTF_01455274;
- 90% Identity
- iTF_01459001;
- 80% Identity
- -