Basic Information

Insect: Tipula confusa
Gene Symbol: salm
Assembly: GCA_963556175.1
Location: OY744475.1:12060795-12066832[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.14 21 7.2 0.1 2 20 131 149 130 151 0.90

2 8 9.9e-06 0.0015 20.2 1.0 1 23 560 582 560 582 0.98

3 8 3.6e-06 0.00053 21.6 1.9 1 23 588 610 588 610 0.98

4 8 1.3 1.9e+02 4.1 6.3 2 23 977 998 977 998 0.97

5 8 4.3e-07 6.4e-05 24.5 0.9 1 23 1004 1026 1004 1026 0.98

6 8 0.0023 0.35 12.7 0.7 2 23 1037 1058 1037 1058 0.97

7 8 0.044 6.6 8.7 3.3 2 23 1413 1434 1412 1434 0.97

8 8 1.1e-05 0.0017 20.0 2.6 1 23 1440 1462 1440 1462 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.14	21	7.2	0.1	2	20	131	149	130	151	0.90
2	8	9.9e-06	0.0015	20.2	1.0	1	23	560	582	560	582	0.98
3	8	3.6e-06	0.00053	21.6	1.9	1	23	588	610	588	610	0.98
4	8	1.3	1.9e+02	4.1	6.3	2	23	977	998	977	998	0.97
5	8	4.3e-07	6.4e-05	24.5	0.9	1	23	1004	1026	1004	1026	0.98
6	8	0.0023	0.35	12.7	0.7	2	23	1037	1058	1037	1058	0.97
7	8	0.044	6.6	8.7	3.3	2	23	1413	1434	1412	1434	0.97
8	8	1.1e-05	0.0017	20.0	2.6	1	23	1440	1462	1440	1462	0.99

Sequence Information

Coding Sequence: ATGATTGAGATTGGAATCAATAAATATGGAATTcatcagcaacaacaacaacttagTGAAAAGGACGAATTTGAAGAAGAAAATGATTCAAATTCGTGTGATTCTGAGATGCAATCAGgTAACAACGATCAACTAAATGGATCATGTTGTATAAgtaatgatgaaattttaacaaaatcgaATTCGATCGATTATAAAGACAACCGgaacgacgacgacgacgacgacgacgacgacgacgacgagataaataattttaacgtgaaaaaagaaaatttcgacGACGATCATTTATTAGTAGAgcccaataataataataatattattaataataataaaatgaccGCAAGTACAACTGCTCTTAACTCTGATAAGAACTTAACACAAATGACATGTAAACAGTGCAACAAAGAATTTGACACCGAACAAGATATTATCGATCATCGTACGATTTGTGAACAATTTTCGGCCGATAATATGAATCAAGaacaaattttaagtaataataacaacaacaacagtagtaataacaacaacaataataataatagtaaactaaatataaataataatagtggtAGTGACATAAATTGGAAggagagtaaaataaaaaacgaaactcCTGACGTTGACGACGACGCGGAGGAGGAGCAGCAGCAGCAGGAGCACGACGAGGAGGAGGACAATTTGATCGAAGACGATTGTGATATGACACAACACGTTTCGAAAAATAATGATGAATGTGATAATGATGAGGATGGTGATCGACGATCGCCGAATACAATAGATGGACCACCATTATATCCGTCGGCGGGTGGACCACCACCACCTTTTTTACCGTTCATGTTCGAAGCGTTTAAAAGTATGGGCGGTGGTATTGGACCGAATGCAATGGCCGGATTAAATCCTAATTTAAGTAGCGAGGAAGCGTTGAAAGAATTTTCGTTActccaatcgaaattatttgcgttgcaacaaaatcaaatgttGCAGCTACAATTCATTCAACATTTACAATCGTATCTCGCCGTAAATCCACAACATCAATTCGCCGCCCAAATGATGGGTATGCATCATCCGGGTATGATGGATTCGGACCCGGACCTAAATAAACCAATCGAACACGAGCACGCGCAAACGATCGATGACGATCTTGAGGATTCGATTAAACCggaaaatgttattaaaaaggAGCCAAACGATCACGATTCGTTTAGTATAAagagtaataaaatattacgaaGTTCTACACCGCATCAGCCGGGACAGGATACACGATTTCCCgaagagtttaaaaaaattaaactcagtTCACCGATTACAACGCCCACGTGCAATAGTCCATCGTTGCAACAACAGCAACATCAgcaacatttacaaaaatcgCAAAACATATCGGCAAATCAGCCGATTATGAGTGAGACGAGTGTGAATACACCAATCTCATCGGCATCGTCACCATATCATTATAATTCGTCGTTAGCTTCGTCGATTATAAAAAATCACGATCCACTGCCATCGATCGATGCCCCAAATTCGCTAGAAATGTTACAAAAACGTGCACAAGAAGTGCTCGATTCGGCATCGCATGGACTCCTAGCCGGCAATTTAGCCGACGAGCTAACATTTAGACGTGATAAGTCGTCGTCACCCGATTTCAAAGGGAACGAGCTAAAACATCGTTGCCGCTATTGCGGCAAAGTGTTTGGTAGTGATTCCGGCCTACAAATTCATATCCGATCGCATACGGGCGAACGTCCATTTAAGTGTAACGTGTGCGGTAGCCGATTTACGACAAAAGGCAATCTAAAAGTTCATTATCAGCGGCACACTTCAAGTTTTCCACATATCGAAATGAATCGTAATTTATCACAAGAAAATATTGACAAGTATCATCAGTATTTATTGTCTAAATCACAATCACCGTCGGCGACTGCCTCGGCACCACCAATACCGGGCACTTCGAACGCCAATCCATTTCAATTGCCCGTTCCTATACCGTTCCCGCAGGATATACGATCACAACTGTCGTTTTATCGCCCACCACTAGACATACTAAAACAATTGGGTGGACATGCAGCAAACGCATTCCCATATAGTATGGTGGGCGCAGGGGTTATATCGCCGCAATTGGTGAATCCAAATGGTGCGACACCGATTGTGGTGCGCGAAAATCCAAACGAGCAGGATGAACCGActgatttaagtttaaaaaaacctACAAATCAaagtagtagtaataatagtaataataatcataatagtagtagtaataataatagtattaataataGTGATATTGATAtggaaaaatctaatttgacaCCGGAgaaattattacttaaaaacCCAGATGATTTATTAATCCACCAGCAACAGCAACAGTTGCAGCAACTTCAGCAACATCAATCACGTAGTGGTACCACGACACCAATGTCGACCACATCGATCGGTGGCCAAAGCCAAAGAAATAATAGTAGCATCAGTAGTAGTCATCATATAAACGAACGTGAACGTCGATATTCACGTGGAACACCGTCGAGCGATGACGATTgtcaaataacaacaaataatacaaataaattatgcgATGGCGATCAATGCGACGATACAATTCAAGACCAACCCGAAAATTTATCGTCGAAGGATTCGACATCGTCGAAATTATCCGCGTCCTCGTCCACCACGCCAACATTGTTACAAAGTAAGACACGATGTAATCCAAATGAATTcattttaaatcatcaaaattttcgtGATAGTATGTTACCGCtaaaaaatccatttataaaTTCTTCCCTTCTCCCACAGCTGACAGAAAAAAATGACAATTCATGGGAGAGTTTTATCAGCATCACAAAACATACGGAATCAGCAAAACTACAAGCGCTAATTGATAGTGCTGATAGTAAATTATCCGATTCAAATGAATGCTTTTTCTGTCATCGTACTTTATCGTGTAAAAGTGCACTTCAAATGCATTATCGTACGCATACCGGTGAAAGACCGTTTAGTTGTCGCATATGCGATCGGGCATTCACCACCAAGGGTAATCTAAAAACTCATATGAGTGTCCACCAAATAAAAACCCCAATGCGTACGTTACCCGAATGTCCGGTATGTCATAAACGCTATTCGAATGTACTCGTTCTGCAACAACATATACGATTGCATACGGGCGAACAACCCGATTTAACACCCGAACAAATCGATGCGGCCGAAGTACGTGAATTTCAACCGTTATTTCCCGATTCGTTTGCAAATCGgatgaataattttgattttagtaatTATCATGGTCTATTGACCAAAGTGACGGATTTACGTAAAACTAAATCGCTCACCTCGAATCAAgaagacgacgacgacgacgaaaTTGCACCATTCGACGAAGAACGTTGTTCGACCGATTCCGAATCAATTAAATCGGAAACACCATTGTCGGCCGCCTCGTCACTAAATCGGATTCGATTGAACAGTCATCACAGTACCACCAGCAATCATACGCATTTAAATTCGGATTCGGATAATAATTTACGGGATACAACCGCACCaccaataataaatacaaataacgatataataaaaccaatacaaTTAACACGTCCTGCGACCACGACACCAACACCAACAGCACTAAATAATAATCGTATTATGAATTCATCACCGCTCGCCGCTCTATCGACATCAAAATTACCTCAACCAAACCACAACCACCACCAAAATCATcaccaacatcatcatcatcatcatcatcaccatcatcagcAACATCATCTCgagaattcaaataattttctattgaataacaataacaataataataaccacCATCGTAATAAGAATGATAAGAGTCCCGATTTTTTGACGAACTCGGCCCATAATTCACAATCATCGTTCGATTCGATGCCATCGACTGgtgtacaacaacaacaccaccCACAATCCCAACCAAGTCAACATCAGTCACATCATACACAACAATCGCAACcgcaaccacaacaacaacagccgcaaccacaacaacaatcaCCTGTATTTTTGGGTACAAAAATGTTTCAAGGACATTCTAAATTTGGTATGTTACCAAATTTGCCGATGATCGGcaacgaaaatttcaacaaCATAAATCCCGAGCAATCGTCACTGAACAACACCCTTATATCATTGGCGCATTCAGTTATGCCGGCTGGACCGTTTAACACGTTCGGACTAACAGGTATTCGCGGTAATACAACATGTAACATTTGTCTGAAAACATTCCCGTGTCACTCGGCCCTCGAAATCCACTATCGAAGTCACACAAAAGAGCGACCGTTCAAATGTTCGTTCTGTTCCCGTGGTTTTTCGACAAagGGTAACATGAAACAACACATGTTGACACATAAAATTCGTGAAATGTCACAGTACCAATTTCCGAGcgatcaaaattatcaaaattccaaaatgtaCGATAGTAAACCGCCGATGAAACACAAGTATCATTTGGGTCATGGTGACGATCGTGACAACGACGGGTATTTGCGTGGCCAAAACAGTAATTCGCAGTCGTCCGATCGTGATTCAACAAATGGCCATCATTCGGACGCAAAAGAATCGTTATTGAAACGATCGAGTAACGATGACGATCAAACGCTGCTTCGTGTTGTTGATAAAGTGATGATGATCGGTGTAATGACCCATCGCTGA
Protein Sequence: MIEIGINKYGIHQQQQQLSEKDEFEEENDSNSCDSEMQSGNNDQLNGSCCISNDEILTKSNSIDYKDNRNDDDDDDDDDDDEINNFNVKKENFDDDHLLVEPNNNNNIINNNKMTASTTALNSDKNLTQMTCKQCNKEFDTEQDIIDHRTICEQFSADNMNQEQILSNNNNNNSSNNNNNNNNSKLNINNNSGSDINWKESKIKNETPDVDDDAEEEQQQQEHDEEEDNLIEDDCDMTQHVSKNNDECDNDEDGDRRSPNTIDGPPLYPSAGGPPPPFLPFMFEAFKSMGGGIGPNAMAGLNPNLSSEEALKEFSLLQSKLFALQQNQMLQLQFIQHLQSYLAVNPQHQFAAQMMGMHHPGMMDSDPDLNKPIEHEHAQTIDDDLEDSIKPENVIKKEPNDHDSFSIKSNKILRSSTPHQPGQDTRFPEEFKKIKLSSPITTPTCNSPSLQQQQHQQHLQKSQNISANQPIMSETSVNTPISSASSPYHYNSSLASSIIKNHDPLPSIDAPNSLEMLQKRAQEVLDSASHGLLAGNLADELTFRRDKSSSPDFKGNELKHRCRYCGKVFGSDSGLQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHYQRHTSSFPHIEMNRNLSQENIDKYHQYLLSKSQSPSATASAPPIPGTSNANPFQLPVPIPFPQDIRSQLSFYRPPLDILKQLGGHAANAFPYSMVGAGVISPQLVNPNGATPIVVRENPNEQDEPTDLSLKKPTNQSSSNNSNNNHNSSSNNNSINNSDIDMEKSNLTPEKLLLKNPDDLLIHQQQQQLQQLQQHQSRSGTTTPMSTTSIGGQSQRNNSSISSSHHINERERRYSRGTPSSDDDCQITTNNTNKLCDGDQCDDTIQDQPENLSSKDSTSSKLSASSSTTPTLLQSKTRCNPNEFILNHQNFRDSMLPLKNPFINSSLLPQLTEKNDNSWESFISITKHTESAKLQALIDSADSKLSDSNECFFCHRTLSCKSALQMHYRTHTGERPFSCRICDRAFTTKGNLKTHMSVHQIKTPMRTLPECPVCHKRYSNVLVLQQHIRLHTGEQPDLTPEQIDAAEVREFQPLFPDSFANRMNNFDFSNYHGLLTKVTDLRKTKSLTSNQEDDDDDEIAPFDEERCSTDSESIKSETPLSAASSLNRIRLNSHHSTTSNHTHLNSDSDNNLRDTTAPPIINTNNDIIKPIQLTRPATTTPTPTALNNNRIMNSSPLAALSTSKLPQPNHNHHQNHHQHHHHHHHHHHQQHHLENSNNFLLNNNNNNNNHHRNKNDKSPDFLTNSAHNSQSSFDSMPSTGVQQQHHPQSQPSQHQSHHTQQSQPQPQQQQPQPQQQSPVFLGTKMFQGHSKFGMLPNLPMIGNENFNNINPEQSSLNNTLISLAHSVMPAGPFNTFGLTGIRGNTTCNICLKTFPCHSALEIHYRSHTKERPFKCSFCSRGFSTKGNMKQHMLTHKIREMSQYQFPSDQNYQNSKMYDSKPPMKHKYHLGHGDDRDNDGYLRGQNSNSQSSDRDSTNGHHSDAKESLLKRSSNDDDQTLLRVVDKVMMIGVMTHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01456833;
90% Identity: -
80% Identity: -