Ngue001210.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nephrotoma guestfalica
Gene Symbol
salm
Assembly
GCA_963691935.1
Location
OY829913.1:18812578-18838417[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.088 17 7.9 0.2 2 20 115 133 114 135 0.91
2 8 1e-05 0.0021 20.2 1.0 1 23 514 536 514 536 0.98
3 8 3.8e-06 0.00074 21.6 1.9 1 23 542 564 542 564 0.98
4 8 1.4 2.7e+02 4.1 6.3 2 23 919 940 919 940 0.97
5 8 4.5e-07 8.9e-05 24.5 0.9 1 23 946 968 946 968 0.98
6 8 0.0025 0.48 12.8 0.7 2 23 979 1000 979 1000 0.97
7 8 0.047 9.2 8.8 3.3 2 23 1317 1338 1316 1338 0.97
8 8 1.2e-05 0.0023 20.1 2.6 1 23 1344 1366 1344 1366 0.99

Sequence Information

Coding Sequence
ATGATTGAGATTGGAATCAATAAATATGGAATTCATCAGCAACAGCAACATAGTGAAAAGGATGAATTTGAAGACGATAATGATTCAAATTCGTGTCATTCTGACATGCAATCAGgtAACAACGACCAACTAAATGGATCATGTAATaataatgatgcaattttaataaaatcaagcatTATTGATAAAGGCGACGAAGACGATGACGacgagataaataattttaacgtaaaagaagaaaatttagaCGAGCaagaaaccaacaacaacaataataatattattaataatagtaAGATGACCGCGAGTACAAccataaatgataaaaatttaacacaaatgaCATGCAAACAATGCAATAAGGAATTTGATACCGAACAAGATATAACCGATCATCGTACggtttgtgaaaaatattcgGACGATAATATGAATCAAGAtcaaattttaagtaataataataacaacagcactaataataataatagcataaatattaacaataatagtGATTTAAATTGGAccgagaataaaattaaaaacgagaCTCCCGACGAGGAGGACGATTTGATCGAAGACGATTGTGATATGACACAGCACGCATCGAAAAACGATGAATGTGATAATGATGAAGATGTTGATCGCCGATCACCGAATACGGTAGGTGGACCGTCACTTTTTCCGCCGGCTGGTGCCCCTCCACCATTTTTGCCATTCATGTTTGAAGCGTTCAAGACCATGGGTGGTGTAGGGCCCAATTTAATGGCTGGTCTAAATCCTAATCTAAGCAGTGAGGAGGCATTAAAAGAGTTTTCGTTGctccaatcaaaattatttgcacTGCAGCAAAATCAAATGTTGCAGTTGCAATTCATACAGCATTTACAATCATATCTAGCACTTAATCCACAACATCAGTTTGCGGCGCAAATGATGGGCATGCATCATCCCGGTATGATGGATCCGGATGCGGATCTAAATAAACCACTGGGACATGAACATGCGCAGTCGATCGATGATGAGCTAGAGGATTCGATTAAACCAGAAAATGTGATTAAAAAAGAACCAAACGAGaacgatatttttaataagactAATAAAATATTGCGAAGTTCGACGCCACACCAGCCGGGACAAGATACGCGATTCCCAGaggagtttaaaaaaattaagttaagttCGCCAATTGCGACACCCACAAGCAGTAGTCCGTCGTtgcaacaacagcagcagcagctaCAAAAATCGCAACATATTGCGAATCAACCGATTATGAGTGAAGGTGGTGCAGGAAATACGCCAAACTCATCAGCAACTTCACCATATCATTACAGTTCGTCGCTAGCATcgtcaattataaaaaatcacgATCCTTTGCCTTCGATCGATGCACCAAACTCCTTAGAAATGTTGCAGAAACGAGCACAAGAAGTGCTTGACTCTGCCTCGCATGGACTTCTAGCCGGCAATTTGGCCGATGAACTGACATTTCGTCGTGATAAATCATCGTCACCCGATTTCAAAGGAAACGAACTAAAACACCGTTGCCGATATTGCGGCAAAGTATTCGGCAGTGATTCTGGCCTACAAATCCATATCCGATCGCATACAGGCGAACGCCCGTTCAAGTGTAACGTGTGCGGTAGTCGATTTACgacaaaaggaaatttaaaagttCACTACCAGCGGCACACGTCCAGTTTTCCACATATCGAAATGAACCGTAATTTATCACAAGAAAATATTGACAAGTATCATCAGTATTTATTGTCTAAATCACAATCACCATCGGCGACTGCCTCGGCGCCACCAATACCTGGTACGTCAAATGCAAACCCTTTTCAATTGCCTGTTCCTATGCCGTTCCCGCCCGATATACGGTCACAGCTATCATTTTATAGACCACCATTGGATATATTGAAGCAGTTGGGGGGACACGCGGCAAACGCATTCCCATACGGTATGGTGGGCGGCGTTATCTCACCACAATTAAATCCAAATGGGGCAGCACCAATTGTGCGTGAGAATCCAAATGAACAAGATGAACCGACtgatttaagtttaaaaaaatccacaaatCCAATTAgcagtaatagtaataataatcataatagtagtagtaataataatagtggtaataatagtattaataatagTGATATTGATATGGATAAACCTAATCTGACAccggaaaaattattacttaaacaTCCGGATGATTTATTAatacatcaacaacaacaacagcagcagccACGTAGTGGTACCACAACACCAATGTCGACGACATCGATTGGTGGCCAAAGCCAAAGAAATAATAGTAGTAGCATCGGTAGTAATTTAAATGAGCGTGAACGTCGGTATTCACGCGGAACGCCGTCAAGTGATGACGATTGTCAAATCACAAGTAAATTAAGTGATGATCAATGCGACGAAACGTTACAAGATCAACCCGAAAATTTATCATCGAAGGATTCCACCTCGTCGAAATTATCCGCGTCCTCGTCCACCACGCCAACATTGTTACAAAGTAAGACACGATGTAATCCAAATGAATTCATTTTAaaccatcaaaattttcgtgatAGTATGTTACCGATAAAAAATCCATTTATAAATTCTTCCCTTCTCCCACAGCTGACAGAAAAAAATGACAATTCATGGGAGAGTTTTATCAGCATCACAAAACATACGGAATCAGCAAAACTACAAGCGCTAATTGATAGTGCTGATAGTAAATTATCCGATTCAAATGAATGCTTTTTCTGTCACCGTACTTTATCATGTAAAAGTGCACTTCAAATGCATTATCGTACGCATACCGGTGAAAGACCGTTTAGTTGTCGCATATGCGATCGGGCATTCACCACAAAAGGTAATCTAAAAACTCATATGAGTGTACACCAAATAAAAACCCCAATGCGTACGTTACCTGAATGCCCGGTATGTCATAAACGCTATTCCAATGTGCTCGTATTACAACAACATATACGGCTACATACGGGCGAACAGCCTGATTTGACACCCGAACAAATTGATGCGGCCGAAGTACGCGAATTTCAACCGCTATTCCCCGATTCGTTTGCTAATCGGATGAATAATTTTGACTTTAGTAATTACCATGGCCTATTGACCAAAGTGACGGATTTACGTAAAACGAAATCGCTCACCTCGAATCAAGACGACGATGAAAATACAACATTTGATGAAGAGCGTTGCTCCACCGACTCAGAATCAATAAAATCTGAAACACCGCTTTCATCGGCATCGTCAGTAAATCGGATTCGGTTGAATAGTCATCACAGTACCAGTAATAATCCTTTAATATCTGATTCGGATAATAATCATCGTGACACGACGACAAATAACGATCtaataaaaccattacaatTAACACGCCCTGCGACCACAACACCAACACCGACGCTACATAGTAATCGTATTATGAATTCATCACCGCTCTCTACCCATTCATCATCGAAATTACCTCAACAAAATCATCACCATaatcaccaccaccaccacttcgagaattcaaataattttctactgaataacaataataatagtctTAACCACCGTAATAAGAATGATAAGAGTCCCGATTTTTTGACGAACTCAACGCATAATTCACAATCTTCGCTCGATTCGATGCAATCGAGTTTACCGCAACAGCATCACTCACAAACACAACAAAgccaacaacagcaacaattaCATCATCCGCCGCCACAGCAGCAATCACCTGTATTTTTGGGTACAAAAATGTTTCAAGGACATTCAAAGTTTGGCATGCTACCAAATTTGCCGATGATCGGAAATGAAAACTTCAATAATATTAATCCGGAACACTCATCGCTAAACAATACACTTATCTCTTTGGCGCATTCCGTTATGCCGGCTGGACCGTTTAATACGTTCGGACTAACAGgtaTTCGCGGTAACACAACCTGTAACATATGTCTGAAAACATTCCCGTGTCACTCGGCACTAGAAATCCACTACCGAAGTCATACAAAAGAGCGACCGTTTAAGTGTTCGTTCTGTTCGCGTGGTTTTTCAACAAAGGGTAATATGAAACAACACATGTTGACACATAAAATACGCGAAATGTCTCAGTATCAATTCCCGGGCGAACAAAActaccaaaattcaaaaatgtacgaTAGTAAACCATCGATGAAGCACAAATACCATTTAGGGGACGATCGCGAAAATGACAATTACTTGCGTAACCAAAATAGTAATTCACAATCGTCCGATCGTGATTCAACGAATGGTCATCATCCGGATGCAAAAGAATCGTTGCTAAAACGATCGAATAACGATGATGAGCAAGCGGTATTGAAGCAATCAAATAAAAATATTCAGGCAGAAACTTTAGATGTCGTAAAGTTGGATGATATCTTGCCTGATGAACAGCGGCACCAACGGGAGAAATACACATTTAATTTGCAACACGTTGAACGTATATTAACGCCAAGATTCATTCATACTTCGGATCAGGCCATCGAGGATATTCATTGA
Protein Sequence
MIEIGINKYGIHQQQQHSEKDEFEDDNDSNSCHSDMQSGNNDQLNGSCNNNDAILIKSSIIDKGDEDDDDEINNFNVKEENLDEQETNNNNNNIINNSKMTASTTINDKNLTQMTCKQCNKEFDTEQDITDHRTVCEKYSDDNMNQDQILSNNNNNSTNNNNSININNNSDLNWTENKIKNETPDEEDDLIEDDCDMTQHASKNDECDNDEDVDRRSPNTVGGPSLFPPAGAPPPFLPFMFEAFKTMGGVGPNLMAGLNPNLSSEEALKEFSLLQSKLFALQQNQMLQLQFIQHLQSYLALNPQHQFAAQMMGMHHPGMMDPDADLNKPLGHEHAQSIDDELEDSIKPENVIKKEPNENDIFNKTNKILRSSTPHQPGQDTRFPEEFKKIKLSSPIATPTSSSPSLQQQQQQLQKSQHIANQPIMSEGGAGNTPNSSATSPYHYSSSLASSIIKNHDPLPSIDAPNSLEMLQKRAQEVLDSASHGLLAGNLADELTFRRDKSSSPDFKGNELKHRCRYCGKVFGSDSGLQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHYQRHTSSFPHIEMNRNLSQENIDKYHQYLLSKSQSPSATASAPPIPGTSNANPFQLPVPMPFPPDIRSQLSFYRPPLDILKQLGGHAANAFPYGMVGGVISPQLNPNGAAPIVRENPNEQDEPTDLSLKKSTNPISSNSNNNHNSSSNNNSGNNSINNSDIDMDKPNLTPEKLLLKHPDDLLIHQQQQQQQPRSGTTTPMSTTSIGGQSQRNNSSSIGSNLNERERRYSRGTPSSDDDCQITSKLSDDQCDETLQDQPENLSSKDSTSSKLSASSSTTPTLLQSKTRCNPNEFILNHQNFRDSMLPIKNPFINSSLLPQLTEKNDNSWESFISITKHTESAKLQALIDSADSKLSDSNECFFCHRTLSCKSALQMHYRTHTGERPFSCRICDRAFTTKGNLKTHMSVHQIKTPMRTLPECPVCHKRYSNVLVLQQHIRLHTGEQPDLTPEQIDAAEVREFQPLFPDSFANRMNNFDFSNYHGLLTKVTDLRKTKSLTSNQDDDENTTFDEERCSTDSESIKSETPLSSASSVNRIRLNSHHSTSNNPLISDSDNNHRDTTTNNDLIKPLQLTRPATTTPTPTLHSNRIMNSSPLSTHSSSKLPQQNHHHNHHHHHFENSNNFLLNNNNNSLNHRNKNDKSPDFLTNSTHNSQSSLDSMQSSLPQQHHSQTQQSQQQQQLHHPPPQQQSPVFLGTKMFQGHSKFGMLPNLPMIGNENFNNINPEHSSLNNTLISLAHSVMPAGPFNTFGLTGIRGNTTCNICLKTFPCHSALEIHYRSHTKERPFKCSFCSRGFSTKGNMKQHMLTHKIREMSQYQFPGEQNYQNSKMYDSKPSMKHKYHLGDDRENDNYLRNQNSNSQSSDRDSTNGHHPDAKESLLKRSNNDDEQAVLKQSNKNIQAETLDVVKLDDILPDEQRHQREKYTFNLQHVERILTPRFIHTSDQAIEDIH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01456833;
90% Identity
iTF_01459001;
80% Identity
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