Thel047754.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula helvola
Gene Symbol
sip1
Assembly
GCA_963556165.1
Location
OY744482.1:19924746-19927202[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.5e-91 5.9e-86 291.4 15.2 3 275 383 647 381 647 0.98
2 2 0.32 2.2e+04 -2.4 0.1 245 268 662 685 651 695 0.63

Sequence Information

Coding Sequence
ATGTCTGATACCGAATACGAAAGATTTGAAATAACAAATCGCGATTTGGAATATGAATTTAATCCGACACGCTATCGTcgtaatttgacaaaaaatcaacaaatttatgGTATTTGGGCATCGGACAGCGACAATGAAGAAGTCGAAGAATATGATAAGCGTGGCCGTCTTAAGCGTGACTCAAAAAAGCCAAAAGATTATACTACGCCGGTTAGCTTTGTGGCAGGTGGAGTCCAGCAATATGGTAAAAAAAAGGAGAAGAACGAGGATAATGCAATTAAAGATGAGGACGAAGATGATGATTCAAATAATGCTCAAGATGAAAGTCAATCGTCTGAATCTGAGGAGGAAGCTTATCGCCCAAGACCATCATTTGCGCAACAGCCACAAGCAAAACCAGCGTCCAAAGGTATCGGACATTGGGAAAGTCACACCAGAGGTATTGGTGCAAAATTGCTGCTTCAAATGGGTTACGAGCCTGGTAGGGGATTGGGTAAAAGTTTACAAGGTATTGCGACACCAGTCGAAGCATCTGTACGCAAAGGAAGGGGTGCTATTGGTGCTTACGGTCCTGAAAAGCTTGCAAAGGTCGAGCAACCAGGTGAACTTGTTGGAGAAAAATCTGCAATCGCtgctgaaaaatcaaaaaaatggttgaagaattccgaaaaaaatcaaaaacgtaAAAAACTGCGCTACTTCTATCGCAGTGTCgaagaaattatcgaaaaaGGTGGGAAAAAAGACTCCTTATTTTTCGATTCGGGTAGCAGTAAACTGGGTAATGTGACCGTAATTGATATGACTGGACCCGAGAAACGCGTATTGAGCGGATACCATGCCCTCGGCCAAAGTAAAATAGGCGACGAAATGCTTTATGATCATACGACGACTAAGAAGagttcaaactttaaactccCCGAACTAATGTACAATCTGAGTCTGATTGTAGATCTATGCGAGCAAGATATAATCGCAATtgaaaaaagtcgaaaatcGACAAAAGACAGAAAGGTTAGCTGTACTCAGGAGACAGAAAAGTTAAAACAGATTGTAGATTTGGAAGAAAATCATATTAACACTCTGGAAAATGCGTTAGAATTGGTCGAAAGTCTCGTAAACCCAAAAACCTTTTTAACGCTCTCGGATGcggagaaaatttttataaatcttctAATCGATTTTCCTGAAGAGTATAAAGAGTTTGGACTGGGTGATTTGGCGCCCGGAATAGTTGCACCGATGTTTGTTAGTCGACTAAAGGATTGGAAACCGCTAGAAGAACCAGCTAAACATGTACCATTACTAAAGCGTTGGAATACCGTACTGAATCAAAATATTGTAAGCCACCAGTCAAATCTTTTTGACCCATACTCGGCCCTAGTATGGTCCGGGATAATTCCAAGCATTCGAAACGCAACTATTGCATGGGATCCACGAAATTATCAACAAATGATTGCTCTATTAGATGCATGGGCACCTTTATTTCCGTCGTGGATTCTTGACAATATTTTAGAACAGATAATTTTGCCGAAACTAACCGTGTACGTGGTTAATTGGGATCCATTGACCGATACGATTCCAATACATGTCTGGATCCTGCCTTGGAGTAAGTTGCTCGCCCACAAAATGGATAATGTGTATACGATCGTTCGCGAAAAATTTGGTAGTGCCCTAAAAGCTTGGCTGCCTTCAGATCGATCAGCACGTGCAATGCTGTTCCCATGGAGGGACGTATTCGATGACGGCGACATGCAAAGCTTTTTAATCAAACATATAATTCCAAAACTTCAGTTATGCCTTGCGGATCTCGTCATCAATCCACTTCAGCAAGATCTTGAGCTTTGGAATCAGGTGTGGGAATGGCATGAACTTGTTCCAGCTACCCTTATGACACAAATGCTCGAAAAATTCTTTTTCCCCAAATGGATTCAAACATTGGTCATTTGGCTCAATCAAAATCCGAATTTGGATCAAGTATCGCGTTGGTATACGGGTTGGAAAAATTTCTTCACCGACGAAGTATTACAGCAGACTAATGTTAAGGAGCAGTTAAGAAGGGCACTTGAATTAATGCATCGTGCCACGGGTACAACACAAACAACAGTTGAAACACAACATGTGCCAGTCGCTCCACCGCCACCTAAACTGATGGATCTACAAATTCCGCCACCAACTATCGAATTTAAAGATTTGGTTTCGCAACGGTGTTCGGACCAAGGCATAATATTTGTTCCGATGCCAGGGAGGCGCGAAATGGGTAAACAAGTTTATCGCATTGGTAAATTATTTGGTTATATCGATCGGTCGGTTATTATGGTGAGCGATGGCAGTTTTAGTAATTGGGCACCAATCTCAATCACAAGCCTACTGGAAAGGGCGATCACCGGTTGA
Protein Sequence
MSDTEYERFEITNRDLEYEFNPTRYRRNLTKNQQIYGIWASDSDNEEVEEYDKRGRLKRDSKKPKDYTTPVSFVAGGVQQYGKKKEKNEDNAIKDEDEDDDSNNAQDESQSSESEEEAYRPRPSFAQQPQAKPASKGIGHWESHTRGIGAKLLLQMGYEPGRGLGKSLQGIATPVEASVRKGRGAIGAYGPEKLAKVEQPGELVGEKSAIAAEKSKKWLKNSEKNQKRKKLRYFYRSVEEIIEKGGKKDSLFFDSGSSKLGNVTVIDMTGPEKRVLSGYHALGQSKIGDEMLYDHTTTKKSSNFKLPELMYNLSLIVDLCEQDIIAIEKSRKSTKDRKVSCTQETEKLKQIVDLEENHINTLENALELVESLVNPKTFLTLSDAEKIFINLLIDFPEEYKEFGLGDLAPGIVAPMFVSRLKDWKPLEEPAKHVPLLKRWNTVLNQNIVSHQSNLFDPYSALVWSGIIPSIRNATIAWDPRNYQQMIALLDAWAPLFPSWILDNILEQIILPKLTVYVVNWDPLTDTIPIHVWILPWSKLLAHKMDNVYTIVREKFGSALKAWLPSDRSARAMLFPWRDVFDDGDMQSFLIKHIIPKLQLCLADLVINPLQQDLELWNQVWEWHELVPATLMTQMLEKFFFPKWIQTLVIWLNQNPNLDQVSRWYTGWKNFFTDEVLQQTNVKEQLRRALELMHRATGTTQTTVETQHVPVAPPPPKLMDLQIPPPTIEFKDLVSQRCSDQGIIFVPMPGRREMGKQVYRIGKLFGYIDRSVIMVSDGSFSNWAPISITSLLERAITG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01457341;
90% Identity
iTF_01457341;
80% Identity
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