Tcon004328.1
Basic Information
- Insect
- Tipula confusa
- Gene Symbol
- sip1
- Assembly
- GCA_963556175.1
- Location
- OY744475.1:45289023-45291478[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.9e-91 1.6e-86 291.7 15.0 4 275 385 648 382 648 0.97 2 2 0.37 8.6e+03 -2.6 0.1 245 266 663 684 652 692 0.63
Sequence Information
- Coding Sequence
- ATGTCTGATACTGAATACGAAAGATTTGAAATAACAAATCGTGATTTGGAATATGAATTTAATCCGACACGGTATCGCCGTAACttgacaaaaaatcaacaaatttatgGTATTTGGGCATCGGACAGCGATAACGAAGAAGTTGAAGAATACGATAAGAGGGGCCGCCTAAAACGTGATTCCAAAAAACCAAAAGATTATACAACGCCGGTTAGTTTTGTAGCCGGTGGAGTACAGCAATCCGgtaagaaaaaggaaaaaaatgacgataaagcGATCCAAGACGGTGAAGACGACGATGATGACTCAAATAATTCTCAAAGTGAGCATCAATCGTCTGAATCTGAAGAGGAAGCGTATCGTGCACGACCATCATTTTCGCAACAACCACAACCAAAACCCACGGCTAAAGGCATCGGTCAATGGGAAAGTCATACAAGAGGAATTGGTGCAAAATTACTGCTTCAAATGGGTTACGAGCCTGGCAGGGGATTAGGTAAAACTTTACAAGGCATTGCGACCCCAGTCGAAGCGTCTGTACGCAAAGGAAGAGGAGCAATTGGTGCATATGGTCCTGAAAAACTGGCAAAAGTTGAACAACCGGGTGAACTCGTTGGTGAAAAATCAGCAATTATTgccgaaaaatcaaaaaaatggttgaaaaattcggaaaagaatcaaaaacgaaaaaaacttcGTTACTTTTATCGAAGTGTCgaagaaattatagaaaaaggTGGCAAAAaagattcattattttttgattcCGGCTGCAACAAACTGGGTAATGTAACCGTAATTGATATGACTGGACCGGAAAAAAGGGTACTTAGTGGATACCATGCCCTTGGCCAAAGTAAAATAGGCGAAGAAACTTTGTACGATCATTCCACCACGAagaaaacttcaaattttaaactacCCGAATTAATGTATAATCTAAACTTGATTGTGGACCTATGTGAACAAGATATAGTCGCAATAGAAAAGAGTCGTAAATCAACTAAAGAGAGAAAAATGAGTTGTAATCAAGAGAAAGAGAAGTTAAAACAGATTGTCGACTTGGAACAAAATCATATCAACACACTGGAAAATGCATTGGACTTGGTCCAAAATCTCGTAAGtcccaaaacatttttaacccTGGGCGacgcagaaaaaatatttataaatctctTAATCGATTTTCCTGAAGAGTATAAAGAATTTGGATTGGGTGATTTGGCGCCCGGAATTGTTGCACCGATGTTTGTTAGTCGATTAAAGGATTGGAATCCGTTAGAAGAACCAGCTAAACATGTACCATTACTAAAACGTTGGAACACCGtgttaaatcaaaatgttgTGAGCCACCAGTCAAACCTTTTCGATCCGTATTCGGCTTTAGTGTGGTCCGGAATAATTCCGAGCATTCGAAATGCCACAAATGTATGGGATCCGCGAAATTATCAACAAATGATTGCGCTTTTAGACGCGTGGGCACCTTTATTTCCATCGTGGATACTCgataatattttagaacaaataatTCTACCGAAACTAACAGTTTATGTTGTAAATTGGGATCCTTTGACTGATACAATTCCGATACATGTGTGGATCTTGCCGTGGAGTACTCTACTCGCCCACAAAATGGATAATGTGTATACGATTGTACGAGAAAAATTCGGAAGTGCGCTAAAGGCATGGCTGCCCTCGGATCGTTCGGCACGTGCAATGCTCTTCCCATGGAAAGATGTGTTCGACGAAGGGGATATGCAAAGCTTTTTAATCAAACACATAATTCCAAAACTTCAGCTAAGCCTCTCGGATCTTGTAATCAATCCGTTGCAACAAGATCTCGAGCTGTGGAATCAGGTGTGGGAATGGCATGAATTAGTTCCACCCGTGCAAATGGCACAAATGCTTGAAAAATACTTCTTTCCCAAATGGATTCAAACCCTTGTCATTTGGCTCAATCAAAATCCAAACTTGGACCAAGTGTCACGTTGGTATACGGGATGGAAAAATTTCTTTACCGACGAAGTACTACAGCAGACAAATGTTAAGGAACAATTAAGAAGGGCGCTCGAATTAATGCATCGTGCCACGGGTACAACACCAACGGCACTCGAAACGCAACACGTACCAGTCGCAGCACCGCCACCAAAACTGATGGACTTACAAATTCCGCCACCCAGCATCGAATTTAAAGATTTAGTTTCACAGCGGTGTTCGGACCAAGGCATCATTTTCGTGCCGATGCCGGGACGACGTGAAATGGGAAAACAAGTTTATCGTATTGGTAAATTATTTGGGTATATCGATCGATCGGTGATTTTAGTAAGCGATGGTAGTTTTAGTAATTGGTCTCCAATCTCAATCACAAGTCTACTGGAGCGGGCGGTTACTGGTTAA
- Protein Sequence
- MSDTEYERFEITNRDLEYEFNPTRYRRNLTKNQQIYGIWASDSDNEEVEEYDKRGRLKRDSKKPKDYTTPVSFVAGGVQQSGKKKEKNDDKAIQDGEDDDDDSNNSQSEHQSSESEEEAYRARPSFSQQPQPKPTAKGIGQWESHTRGIGAKLLLQMGYEPGRGLGKTLQGIATPVEASVRKGRGAIGAYGPEKLAKVEQPGELVGEKSAIIAEKSKKWLKNSEKNQKRKKLRYFYRSVEEIIEKGGKKDSLFFDSGCNKLGNVTVIDMTGPEKRVLSGYHALGQSKIGEETLYDHSTTKKTSNFKLPELMYNLNLIVDLCEQDIVAIEKSRKSTKERKMSCNQEKEKLKQIVDLEQNHINTLENALDLVQNLVSPKTFLTLGDAEKIFINLLIDFPEEYKEFGLGDLAPGIVAPMFVSRLKDWNPLEEPAKHVPLLKRWNTVLNQNVVSHQSNLFDPYSALVWSGIIPSIRNATNVWDPRNYQQMIALLDAWAPLFPSWILDNILEQIILPKLTVYVVNWDPLTDTIPIHVWILPWSTLLAHKMDNVYTIVREKFGSALKAWLPSDRSARAMLFPWKDVFDEGDMQSFLIKHIIPKLQLSLSDLVINPLQQDLELWNQVWEWHELVPPVQMAQMLEKYFFPKWIQTLVIWLNQNPNLDQVSRWYTGWKNFFTDEVLQQTNVKEQLRRALELMHRATGTTPTALETQHVPVAAPPPKLMDLQIPPPSIEFKDLVSQRCSDQGIIFVPMPGRREMGKQVYRIGKLFGYIDRSVILVSDGSFSNWSPISITSLLERAVTG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457341;
- 90% Identity
- iTF_01457341;
- 80% Identity
- -