Tfem009201.1
Basic Information
- Insect
- Tiphia femorata
- Gene Symbol
- -
- Assembly
- GCA_944319705.1
- Location
- CALUEQ010000238.1:158491-163719[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 1.2e-09 37.9 0.0 1 39 305 344 305 348 0.90 2 4 4.5e-12 3.6e-09 36.3 0.1 2 39 360 397 359 400 0.94 3 4 5.7e-18 4.6e-15 55.2 0.0 4 45 417 459 414 459 0.96 4 4 1.8e-18 1.5e-15 56.7 0.1 1 42 466 508 466 509 0.97
Sequence Information
- Coding Sequence
- ATGCATCCCGCGGTGGCGGCCAATGCAGGGAGACACTTCGCTCGTCGAGCCCGAAGATTTGCGGACGCTTCGACGTGCTTGTACATACCTGCCCGTAGTGACAGGTCACTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTCTGCGAGCTGCCGGAGAGGGACGGTCCACCCTCCGTGAGCCTGAGCTCGCCGCCAAGGGAGCCCGGCACCCCTAGGCTCAACTACACGAAGCTGAAGAGGCACCATCCGAGGTACAAGCGGGCGAGAACCACGTTCGAACCACGCGCAACCGATTCCAGGCACTACGACAGATACAAAGAGGAGGAGAGCAACGAGAATTGCAATCCGGACAACAAAGAGAACCATAGGGACTGGCGAACCGAAGATGAAGAGTGCACGGAGGCAGCAGCAGCAGCAGTAGTCCTGGAAACCTGCCAACGTAACAACAACAACGGTAACGGTACAAACAACAATAATAACGGTGACATGTTCTGTCACACAGGGCTGGGTCACTACGGACACCATCCAGATCCTGGGGAGGTCGATCTACCACCGGAAACGCAGCCAACCCCACCCAGCGCTACATTAGTTGGTACGACGATCACTCACTTAAGGGATCCGGATCATCATTCGACGGAGATACAAAATTGTGACAGTGTAAAGATCAAGTTCGAGACGTTGCACACGATGGATTCCTCGGACACGATTGACATCGACAGTCACATGTCGGATCGGGCCAGTGTCAGTTCGAAGAATGCCGCGGACAGTGATAACATGATGATGATCACCCCGGAACTTCTTGGATTAATGCCGTCCGGAAGTTCGGTTCACTCCGATTCCGGGGAAAACAATTCGAGGGGACATTCTGGGCAATCGGGCTCGCATCATCACGGATCAAAATCGTGGACGCAGGAGGATATGGACGCCGCTCTGGAAGCGTTACGAAATCACGATATGAGTCTGACTAAGGCATCGGCGACGTTTGGCATTCCATCGACGACGTTGTGGCAGCGAGCACATCGATTGGGAATCGACACTCCAAAAAAGGATGGACCCACGAAGTCGTGGAGCGACGAAAGTTTAAACAATGCGCTCGAGGCGCTGCGTACGGGGACTATCTCGGCGAATAAAGCGTCGAAGGCGTTCGGGATACCTTCCAGCACTCTATACAAAATTGCAAGACGAGAAGGAATTAGGCTAGCCGCGCCCTTCAATGCCAGTCCCACCACGTGGTCGTCCGCGGACCTGGATCGCGCGCTAGAAGCAATAAGATCGGGACAGACGTCGGTGCAAAGGGCATCCACAGAATTTGGCATTCCTACGGGGACACTTTATGGAAGGTGCAAAAGAGAAGGCATAGAACTCAGTAGAAGTAATCCTACACCGTGGAGCGAAGATGCCATGACCGAAGCCCTAGAAGCAGTCAGATTAGGTCATATGAGTATTAATCAAGCGGCTATTCATTATAATCTTCCATATTCATCGCTGTATGGTCGCTTCAAGAGGGGCAAATACGAGGAGCCAGTGGTCGGTGATATATCGCAAGATGGAACCAGTCCGCATTTCCATCAAAGTCCCAACCAAAATCATTCGTCCGCACTTCCAGATCAAATGCCCTATCAAGGAAGCTGA
- Protein Sequence
- MHPAVAANAGRHFARRARRFADASTCLYIPARSDRSLLKTADQLKIKGLCELPERDGPPSVSLSSPPREPGTPRLNYTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNENCNPDNKENHRDWRTEDEECTEAAAAAVVLETCQRNNNNGNGTNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSSADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -