Basic Information

Insect: Tineola bisselliella
Gene Symbol: -
Assembly: GCA_028551675.1
Location: JAPWLS010002288.1:44089-46924[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0016 14 5.9 0.0 21 45 128 152 119 155 0.89

2 6 1.7e-05 0.15 12.2 0.2 21 44 156 179 152 183 0.89

3 6 0.0019 17 5.6 0.1 21 48 184 211 180 214 0.88

4 6 0.046 4.1e+02 1.2 0.7 21 44 213 236 208 241 0.88

5 6 0.00056 5 7.3 0.1 22 44 242 264 236 269 0.88

6 6 0.082 7.3e+02 0.4 0.0 26 43 330 347 324 350 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0016	14	5.9	0.0	21	45	128	152	119	155	0.89
2	6	1.7e-05	0.15	12.2	0.2	21	44	156	179	152	183	0.89
3	6	0.0019	17	5.6	0.1	21	48	184	211	180	214	0.88
4	6	0.046	4.1e+02	1.2	0.7	21	44	213	236	208	241	0.88
5	6	0.00056	5	7.3	0.1	22	44	242	264	236	269	0.88
6	6	0.082	7.3e+02	0.4	0.0	26	43	330	347	324	350	0.88

Sequence Information

Coding Sequence: ATGTCGAATGACTCTTGTCACAATAGCGGCTCCTATCCCACGCAAACAGAGAAGTTAAAAATGGAAATTGAAATCAAGTTGGAGCCAACGTCTGAAGATGAAGACGTGTCTCCGAAGCTGGCGGCGACAGATAACGGGCTTAAAGATAATTTGAATGAAAAACCTGCTTTAAAAGATGGAGATATGGAATTGAAGGCTGAACCTGTCAGTCACCATGATGATGATAGTGTAAATAATGAAGCAACTGGGGAATGTACAACCAAAGATATACCAAAGAAAGAAACATTAACATGGCCAAAGGACCTGATGCTGATACCACTGAGAAAGAAGTATAATAATGGCGAAAAGCGTGCTATTTATAAGCGCAAAGGATTAGACTATGATGAAAATCCATACAAATGTGTCGAATGTCAGATGGAGTTCTCACAGAGCAGCAATCTGAAGGCGCACCTCCGTACGCATAGTGGTGAGAGACCATACAAGTGCGCAATATGCCATGCTGCGTTCACCAGTAGCAGCAATCTAAAGGAGCATGTGCGCACGCATACCGGCGAGAAGCCCTACATTTGTGATACGTGCCTCACTAAGTTTGCAAACAGTAGCAGCCTCAAGCGTCACGTCAGAAGGATGCACACGAGAGAGAGACCGTACATCTGCAACCAGTGCAATGCTAACTTTTCGACGACTTGTAATCTCAAGACTCATCAGAAGACGCACACGGGTGAAAAAAATTACACATGTAAAATTTGTAAAGTGGGGTTTTCGCAACGCAGTAATATGAGGTCTCATATGCGAACGCACCTCGGTAGATTAAAGTTTGAATGTGACCTTTGCAGTGTCAAGTTCTCACGTCGTGGTGGTCTTCAGGCGCATAAGAGATTTCATTTAGGCGTGAAGCCGTTTAAATGTGATGTTTGTGGAGATTCCTTTTCTTACAAAACACTGCTCCGGTCACACGTGATGATGCATACTGGTCAAAAAGTTTACAAATGTAATATTTGTCGTGCGGAGTTTGTCAATGAAAAGAATTTGAGCAATCACTCTAAGCGAGGGAACTGTGAGCGTAAACTGAGGCCTTGTCTGAAATGCAACATGTGCTTTCCACGCATAAGTCTGTTAAGGAAACATATTTGCATTGAAAATGTATCCATAGATGTCCGATTAAAGAAGAACATATATATTCCAGAATAG
Protein Sequence: MSNDSCHNSGSYPTQTEKLKMEIEIKLEPTSEDEDVSPKLAATDNGLKDNLNEKPALKDGDMELKAEPVSHHDDDSVNNEATGECTTKDIPKKETLTWPKDLMLIPLRKKYNNGEKRAIYKRKGLDYDENPYKCVECQMEFSQSSNLKAHLRTHSGERPYKCAICHAAFTSSSNLKEHVRTHTGEKPYICDTCLTKFANSSSLKRHVRRMHTRERPYICNQCNANFSTTCNLKTHQKTHTGEKNYTCKICKVGFSQRSNMRSHMRTHLGRLKFECDLCSVKFSRRGGLQAHKRFHLGVKPFKCDVCGDSFSYKTLLRSHVMMHTGQKVYKCNICRAEFVNEKNLSNHSKRGNCERKLRPCLKCNMCFPRISLLRKHICIENVSIDVRLKKNIYIPE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01453459; iTF_01453439;
90% Identity: iTF_01453459; iTF_01453439;
80% Identity: iTF_01453459; iTF_01453439;