Ttri009677.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tinea trinotella
Gene Symbol
-
Assembly
GCA_905220615.1
Location
HG992320.1:6035893-6052466[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0001 0.0059 17.3 0.1 3 23 141 161 140 161 0.97
2 17 9.5e-07 5.3e-05 23.7 1.2 1 23 167 189 167 189 0.99
3 17 4e-06 0.00022 21.7 3.5 1 23 195 217 195 217 0.99
4 17 3e-06 0.00017 22.1 2.6 1 23 232 254 232 254 0.99
5 17 5.4e-05 0.003 18.2 3.1 1 23 269 291 269 291 0.98
6 17 3.8e-07 2.1e-05 24.9 1.5 1 23 306 328 306 328 0.99
7 17 0.00017 0.0094 16.6 2.8 1 23 334 356 334 356 0.98
8 17 1.7e-05 0.00094 19.8 4.3 1 23 362 384 362 384 0.98
9 17 0.038 2.1 9.2 1.8 1 23 391 413 391 413 0.98
10 17 2.3e-07 1.3e-05 25.6 4.8 1 23 419 441 419 441 0.99
11 17 0.044 2.5 9.0 1.8 1 23 448 470 448 470 0.98
12 17 2.5e-06 0.00014 22.3 1.5 1 23 476 498 476 498 0.99
13 17 0.0024 0.14 13.0 0.5 1 23 505 527 505 527 0.99
14 17 4e-06 0.00023 21.7 1.8 1 23 533 555 533 555 0.98
15 17 0.0021 0.12 13.2 0.3 1 20 561 580 561 583 0.93
16 17 5.1e-05 0.0029 18.2 1.3 2 23 590 611 589 611 0.96
17 17 3.7e-06 0.00021 21.8 1.4 1 23 617 640 617 640 0.97

Sequence Information

Coding Sequence
ATGTTTGAGCAGCAAATCAAAGCTGAACCTATGAGCTTCTACACGTCCCACCCTCACATGCACTCTGGTCCACCTTTAATAGGTAGATCGGAGTCTTCACACAATATACTGAATATTAATCAACATCATCTGGATGATTCCAAAGACAGCCTCATAGTACAACATCAGCAACATCAACAGCAAATGCTTGAACATGAACATCATGAACATGACATGCAGACGCATGAACATGAACATGATCATGAACATGAACACGAACATGATCCTGATGAGTTGAGCTTCAAAGGAATGGACGATGAAGGCGTGGAGCTGGATATGGATGCACGACAATGTTCACAAGGCATGGTGGACATGGGATCTGGTCCGAAGATGGAGGTTACAAATGGAGGTACACAAACACCAAGATCTAAACCACAAGCTTGTAAGGTTTGTGGTAAAGTGCTTTCTTCCGCTTCTTCATATTATGTTCATATGAAACTACATTCTGGGAATAAACCATTTCAATGTACGGTGTGTGATGCAGCATTCTGCAGGAAGCCGTACCTGGAGGTCCACATGCGTACGCATACGGGAGAGCGGCCCTTTCAGTGCGAGTTGTGTTTCAAGAGATTTACACAGAAATCAAGCTTAAATACCCATAAGCGCGTGCACACTGATGAGCACTTGCGGGCCCTGGTGGAGAAGGAGCGGCCGTTCCAGTGTGACCTCTGTGAGATGCGGTTCACGCAGAGTTCCAGCCTCAACCGACACAAGAAAACACACACCGAGGAGCACAGACGAGCCCTGTTAGAAAAAGTGCGGCCGTACCAGTGCCACATCTGTTTTATGCGCTTCACTCAGAAGTCCAGCCTCGGCCGACACGGAAAGATACATACCGAGGAGCACATGCAAGCGCTGATCAACAAAGTCCGCCCATACCAATGCGACATCTGCGACAAGCGGTTCACGCAGAAGTCGAGCCTTGGCACTCATAAACGTATACACACTGGGGAGAGACCGTTCCAGTGCACCGTCTGCCTCAAGTCCTTCACGCAGAAGTGCGCGCTCAATTTGCACGAAAAGATACATACGGGCGAGCGGCCATATCACTGCGACGTGTGCCTCAAGCGCTTCACTCAGAAGTCCAGCCTCAATATTCATAAGAGGACTCACACAGTCCAGGGCAGACCGTTCCAGTGCCTGTCGTGTCCCGCCGCCTTCACCTGCAAGCAGTACCTGGAGATTCACACGCGGACGCACACCGGCGAGCGGCCCTACCAGTGCGACATTTGCCACAAGCGATTCACGCAGAAGTCCAGCCTCAACATCCACAAACGGACGCACTCAGTACAAGGGCGGCCGTTCCAGTGTCTGCAGTGTCCGGCAGCGTTCACGTGCAAGCAGTACCTGGAGATTCACAATCGCACTCACACCGGCGAGCGACCATACCAGTGCGAAGTGTGCCTCAAGAGGTTCGCGCAAAAGTCAACGCTCAACATTCACAAGAGGACGCATACGGTGCAAGGACGGCCGTACCAGTGCGCTGAGTGTCCCGCCGCGTTCACCTGTAAACCGTACCTGGAGATACATACACGAACTCACACTGGCGAGCGGCCCTTCCAATGCGACGTCTGTCTCAAACGCTTCACACAGAAATCAACACTGAACATTCACAAGCGAATACATACTGGTGAACGTCCGTACGCGTGTGATATTTGTCAAAAGAGATTTGCTGTGAAGAGTTATGTGACAGCACACAGGTGGTCTCATGTTGCTGACAAACCATTAAATTGTGACCGTTGTTCATTAACGTTCACGTCTAAGTCACAATTTGCACTTCATATACGCACACATTCGGCGGCGTCCTGTTACGAATGTAGCGTGTGCGGCCGAACTTTTGTCAGAGATAGCTACCTAATAAGACACCACAATCGCGTGCACCGCGACAATCATAGCAACATGTCTGCGAACAGTATGCCCAACATAAACAGCGTGGCAACAAACACAAGCTCCATTAATGCTAACTACGACTCACCAGGGGTCTGCGATCTCAGTTTTGTGCCAATGGTGAATAGATATATGACGTCACAAGGCACCCAAGTCTCAATGCAGGATACGTCGAGCAAAATGTCAGCGATGTCGCCCCAGTCTATTGGCTCGATTTCATCGCCGCCGCCGCCACACACACCCACGCCCCAACCGATGCCAGGGCAAATGCATCTCTCTGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHPHMHSGPPLIGRSESSHNILNINQHHLDDSKDSLIVQHQQHQQQMLEHEHHEHDMQTHEHEHDHEHEHEHDPDELSFKGMDDEGVELDMDARQCSQGMVDMGSGPKMEVTNGGTQTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCELCFKRFTQKSSLNTHKRVHTDEHLRALVEKERPFQCDLCEMRFTQSSSLNRHKKTHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTEEHMQALINKVRPYQCDICDKRFTQKSSLGTHKRIHTGERPFQCTVCLKSFTQKCALNLHEKIHTGERPYHCDVCLKRFTQKSSLNIHKRTHTVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICHKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCEVCLKRFAQKSTLNIHKRTHTVQGRPYQCAECPAAFTCKPYLEIHTRTHTGERPFQCDVCLKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSLTFTSKSQFALHIRTHSAASCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSMPNINSVATNTSSINANYDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSSKMSAMSPQSIGSISSPPPPHTPTPQPMPGQMHLSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01016950;
90% Identity
iTF_01453442;
80% Identity
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