Tshe043854.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010005923.1:19527-44481[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.12 32 7.6 2.2 1 23 223 245 223 245 0.93 2 10 0.00018 0.048 16.5 1.4 1 23 250 274 250 274 0.94 3 10 0.00019 0.051 16.4 0.8 2 23 298 320 297 320 0.95 4 10 0.00093 0.25 14.2 1.3 1 23 326 349 326 349 0.94 5 10 0.00051 0.14 15.0 0.6 1 23 362 385 362 385 0.90 6 10 1.2e-06 0.00033 23.3 2.6 1 23 391 413 391 413 0.98 7 10 3.3e-05 0.009 18.8 0.4 1 23 419 441 419 441 0.93 8 10 0.81 2.2e+02 5.0 6.3 2 23 491 512 490 512 0.96 9 10 3.2e-05 0.0086 18.9 1.9 1 23 518 540 518 540 0.98 10 10 2.5e-06 0.00067 22.3 5.2 1 23 546 568 546 568 0.98
Sequence Information
- Coding Sequence
- ATGTACAGAGCTTCCCTTAACGCTCAAAACCTTAGTTTCGTAGAGTTGAACCGGAGATTGGAGAAGGAGCGTCAGAGGTCGGAACACACTGGTATCAGCTTACTGGTCACCACGGAGACCCCGGTGAATGCCGATGGTGAACAAGATGGCGAGGAGGAGACTACAGAGAAGCGAATTGTAATCCAGATCCTGGAGGATGGCTCCTTGTACGCCCCAGATCACAAGATGACCCTGCAGATGGAGGGTCTGGAGAAACCACGGCGCAAGCGCGGCCGCCCGCCCAAGCGCCCGCCTGATCCTGAGGAAGACAGGCCCAAAGAACCGGAGGAACCCTTGGAGAACCAGCCAGAGGAGGAAATGGAAGAGGACGCAGATGGGCGCAAGCGACGCAGGATAAAAGTACCGCAGAGATTCAAGGAGGCGGTCCAAGGTAAGGAGTTGGACCGTATCTTCAAGGAGGAAGGTTTGATAAACGAGGACGAAGAAGAGGAAGGAGTGGAGGAAGAGGAAGTGCAGGAGAAGACTCCTCCACTTGAAGTTATCGCTCAGGAAGAGGTGATTGGTCACTTGGAGACCCAGGAGGGGCAGGACCTAGGGGAGCTGGTGATCGTAAACCGTGGCCGCAAGAGGGGCCGGCCGCGGGGCGGGAAGCGCCGGAAAGTTCGCTTTGAATGCGAGATCTGCGGCCGAGGTTTCCTCCACAAGGGTCGTTACAAGATTCACAAGACCTACCACAAAGGAGTCAAGTTCGAGTGTAGCAGCTGCAACAAGAGGTTTGTCAACCGAGAGCTATTTGAGTCTCACCAGAAAACTACGGGGCATATCGGCGAGGGCATAATCGAGGGGCTGGCAGACGGAGGGGATGGGGGGGAGATGCCAGGCTGCCGGGTGAAGTGCTGGCAATGCGATAAAACTTTCCAGACCAAGCAGAGCTTTGAgGTTCACCAGAAAGCCATTCACGAGGGAGCTAAGCCCTTTGTTTGCGAGGTTTGTGACAGGACCTTTGCCTACCAGAACAGCCTTAAGTGCCACATGCTGGCATCGCATTGtgagGACACGAAAGGTCTGGACAAAGACAAGGGCTACCCTTGTGACATGTGTGACAAAAAGTTTAACCACCCCAGCTCGGTGATTTACCACAAGGAAGCGGAGCACAACAACGGCCGTGTGTTTGTCTGCAACAAGTGCGGGAAGGGCTTCAGACACCGCCAGTTGCTACAGAGGCACCAGCTGGTACACTCGGAGGACCGTCCGTATGTGTGTAAGTCGTGTGGTGCGAGCTTCAAGACTAAGGCCAACTTGCTGAACCACCAGCCCACACACACCGGAGAGAAGAAGCCTGATCTAATCCTCTGCTCGTGTTTGACTACTCTGGTGGTCGAAAGTAGTTCTTCTTACTCTAATCCGTGTCCCGCTCCCGGGTTCCAGTTCAAGCTGCACGTCAAGCGGCACACGGGGGAGCGACCGTGGAAATGTGACTTCTGCGGGAAGTCGTTCCTACACAAGGACACGTGGAAGTGCCACACGCGGCGTCACAAAGGCGAGCGCCCCTTCCAGTGCCACTACTGCGCCCGAGGCTTCACGGAGCAGTGGGCCCTCAAGAAGCACCTTCGACTTCACACAGGGGAGAAGCCTTACACTTGTAACACTTGCGGGAAATGTTTTGCCGACTGCTCGAACCTCGCCAAACATAAAAAGGTCCACAAGGGCAGCTGTGAGAACGAAAGCACCGCTCCAGGGGACTCTCTCGTGGACCGCACCACCGTCTGGAACATCATCCAATCCCACTTGGCCAAGGATGTTTCCGAGCAGGACGGGGCAGACTCCCAGGGAGAGGACGCAGGTCAACAGATCATCTACGTCACTTACCAAGACCCTGATGACCCCGAGGGCAAAACCTTGCATATTGTTGACTCCCAACAGAACCCACAGCACTCGGAGCTGGAACAGTCGCAGGAACAGCGTCAAGTGGCGCTGGGGGAGACTGAGGAAGTCGGAGAACTGGAGGAGTCGAAGGGCTCTCTGGGGCCTCTGCCCCACTCTCTTCAGGTGATGGACGAGGAGGGTAACCCCATCCACTTCACCATGCAGGACGGTCGAGAGCTACAGATCACGACGACAGACGGTCAGTCGTTGCACGTGACCACTCTGGACGGTCAGACCATCCCCTTGCAGCTCACCACCCCGGATGGACAACCTCTTACCGCGGGCGGGCCGGAGGTCAGGGTTCATCCCTCTGACGACAACCTCATGATGGGACAGCCCTCGGATGACCTCATCGTCCAGGAGCCGCACACCCACCCAAACGGGATGCTGAAGAGCGTTAAGggaAGTGAAAGATTGTCAGGTGAACCTCTGGCCGAGGGGGAGCAAGCCATCGAGTTCACGACGCCCGACGGTCAGAAAGTGAGGCTTGTTACTTCTTACGGGGTGGACCCCATCACAGAGTACCTCAGCACTAACACGTAG
- Protein Sequence
- MYRASLNAQNLSFVELNRRLEKERQRSEHTGISLLVTTETPVNADGEQDGEEETTEKRIVIQILEDGSLYAPDHKMTLQMEGLEKPRRKRGRPPKRPPDPEEDRPKEPEEPLENQPEEEMEEDADGRKRRRIKVPQRFKEAVQGKELDRIFKEEGLINEDEEEEGVEEEEVQEKTPPLEVIAQEEVIGHLETQEGQDLGELVIVNRGRKRGRPRGGKRRKVRFECEICGRGFLHKGRYKIHKTYHKGVKFECSSCNKRFVNRELFESHQKTTGHIGEGIIEGLADGGDGGEMPGCRVKCWQCDKTFQTKQSFEVHQKAIHEGAKPFVCEVCDRTFAYQNSLKCHMLASHCEDTKGLDKDKGYPCDMCDKKFNHPSSVIYHKEAEHNNGRVFVCNKCGKGFRHRQLLQRHQLVHSEDRPYVCKSCGASFKTKANLLNHQPTHTGEKKPDLILCSCLTTLVVESSSSYSNPCPAPGFQFKLHVKRHTGERPWKCDFCGKSFLHKDTWKCHTRRHKGERPFQCHYCARGFTEQWALKKHLRLHTGEKPYTCNTCGKCFADCSNLAKHKKVHKGSCENESTAPGDSLVDRTTVWNIIQSHLAKDVSEQDGADSQGEDAGQQIIYVTYQDPDDPEGKTLHIVDSQQNPQHSELEQSQEQRQVALGETEEVGELEESKGSLGPLPHSLQVMDEEGNPIHFTMQDGRELQITTTDGQSLHVTTLDGQTIPLQLTTPDGQPLTAGGPEVRVHPSDDNLMMGQPSDDLIVQEPHTHPNGMLKSVKGSERLSGEPLAEGEQAIEFTTPDGQKVRLVTSYGVDPITEYLSTNT*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01446849;
- 90% Identity
- iTF_01446849; iTF_01445875; iTF_01447792;
- 80% Identity
- -