Basic Information

Insect: Timema shepardi
Gene Symbol: RREB1
Assembly: GCA_902151425.1
Location: CABFVX010006108.1:10719-25805[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00025 0.068 16.0 0.4 1 23 123 145 123 145 0.97

2 16 8.2e-05 0.022 17.6 0.1 1 23 162 184 162 184 0.98

3 16 5.4e-06 0.0015 21.3 2.4 1 23 190 212 190 212 0.99

4 16 2.3 6.1e+02 3.6 0.1 1 23 338 362 338 362 0.82

5 16 0.034 9.1 9.3 1.5 2 22 368 388 368 391 0.89

6 16 5.8 1.6e+03 2.3 0.3 1 20 452 471 452 473 0.80

7 16 0.016 4.2 10.4 0.1 1 23 651 673 651 673 0.97

8 16 0.02 5.5 10.0 0.3 1 23 681 703 681 703 0.99

9 16 0.0021 0.56 13.2 2.3 1 23 709 732 709 732 0.97

10 16 0.0012 0.32 13.9 2.1 1 23 895 918 895 918 0.95

11 16 0.0046 1.3 12.0 0.3 3 23 1212 1232 1211 1232 0.98

12 16 0.024 6.5 9.8 5.1 1 23 1238 1261 1238 1261 0.97

13 16 0.0018 0.5 13.3 2.1 1 23 1303 1327 1303 1327 0.96

14 16 0.68 1.8e+02 5.2 1.3 1 23 1445 1467 1445 1468 0.95

15 16 0.0047 1.3 12.0 0.5 3 23 1525 1545 1523 1545 0.96

16 16 0.011 2.9 10.9 5.9 1 23 1551 1573 1551 1573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00025	0.068	16.0	0.4	1	23	123	145	123	145	0.97
2	16	8.2e-05	0.022	17.6	0.1	1	23	162	184	162	184	0.98
3	16	5.4e-06	0.0015	21.3	2.4	1	23	190	212	190	212	0.99
4	16	2.3	6.1e+02	3.6	0.1	1	23	338	362	338	362	0.82
5	16	0.034	9.1	9.3	1.5	2	22	368	388	368	391	0.89
6	16	5.8	1.6e+03	2.3	0.3	1	20	452	471	452	473	0.80
7	16	0.016	4.2	10.4	0.1	1	23	651	673	651	673	0.97
8	16	0.02	5.5	10.0	0.3	1	23	681	703	681	703	0.99
9	16	0.0021	0.56	13.2	2.3	1	23	709	732	709	732	0.97
10	16	0.0012	0.32	13.9	2.1	1	23	895	918	895	918	0.95
11	16	0.0046	1.3	12.0	0.3	3	23	1212	1232	1211	1232	0.98
12	16	0.024	6.5	9.8	5.1	1	23	1238	1261	1238	1261	0.97
13	16	0.0018	0.5	13.3	2.1	1	23	1303	1327	1303	1327	0.96
14	16	0.68	1.8e+02	5.2	1.3	1	23	1445	1467	1445	1468	0.95
15	16	0.0047	1.3	12.0	0.5	3	23	1525	1545	1523	1545	0.96
16	16	0.011	2.9	10.9	5.9	1	23	1551	1573	1551	1573	0.98

Sequence Information

Coding Sequence: ATGGGAAATGAAAGCATACATCGAGAATCCTCTCAGACTGATAACAACAAGTATGTAAGAAAACAAGAACCCCTGAATCTACAAGACACGGGAAGAAAGTCCTGTGAATCAGACGTCGATACGTTAGAACATAACAACGAATGTGAAAGGTTACCCAATAACAGCACAGACAGCAAACAGTTTGAAGTTGCCAGTAAGGAATCCATAGCAATAAACAAGAAAGGTTATGAAAGACTCAAAGATATAACTGAAACAAAAAATGATAATGACAAAGAGTGCGATAGCTTGGATATGCCAGAAAATTGTTCTCTTGATTGCTTGTCCTCAAACAGTGAAAATAGTCAAATGGATGATTCAGATATGAAATTTGCCTGCCCAATCTGTGACATGATTCTATCTTCCCAGCACGAGTTTACTTTACACATTCGCTCACACAACAATAATTCAGAGTCATTAGTGTATCCTCTAGCATGCTTGAAGAACTACACTTGCCGTATTTGTGGCAAAGGGCTAAGTTCATCCAGTTCATTGGATCGTCATGTGTTAGTCCACTCTGGTGAGCGGCCATTTAAATGCATGACTTGTGGTGTTGCTTTTACAACAAATGGAAACATGCATAGGCATATGAGGACCCATAATCCCTCCCATGTGGGGGATAGTTTGGTTTTGAATTCCAAATGTGAATACACCAGTTATGAGAGTGACGGTAGTTCTGATAGTGTAGGATCAAGCAATAGCATATCTGCCAATCCAAGGAAAAGTCCTCATTTAGACACTTCTCAAGCTGGACCTGCAAAGAGGCGAAGAGTTGATAGTGACGGTTTTCTTATTGAATCTAACAACAACACCAATAAACTTTCTGAGccattattatcaataaaatcaCATGTAGAGAATGGAATAAAGAGAAAGGCTTCCGATTCGCTAACACCCTCTGATTATGAAGGGGAAGAAATTGTTAGGAGGAACGTAAACCCTGTTACATATCATCAAAATGAATTTGTTCAACAATTCCAATGTCCTGTTTGTAAAAGAATTGATTTTGCATCGTTATATGTTTTAGAGACACATCTTGAAGAAAGGCATCCTGATTATAAGGCCACGTGTAATCAGTGcgacttaatttttaaaaatcatcgAGCTTTAAATCTTCATCGTTTCATGGCCCAACATGATAATAGTGAAGAACACAACGTTGTAAGGGCTAAGAAGAGTAAACACATTAATAGAGCATCCTCTGTCTTGGGTTTCAGAGACCTAACATTTGTAGACTTTTCTAGCGAAAAGTTCCCATACATTGCTAAAGTAATGTGTGAACAAAGTATGCATAGAGCAACTAGTGCCTTTCATAAGTTTCAATGCCAAAAGTGTGCAAGAGCTTTTCCATGTGGTAGTGCCTTGAGCATTCACCGTCAGGCGTGCTTGACTTCACGTGAAAAAATGGATTTCAACCACCCATATGACCCTGATAGTTTTCATGGAGATGAATTTCCATCAAGCGACTGTGATACTCCAACAGATCTGAGCAGCAAAAAGAAACCTAGACAGCATTTACGATACGAAAAATCTTCAGATTGTGAGTCTGAAGAAGAACAAAAAAGAGAAGATTTTTTTGCCCATTTAGATCTGCAGACTAAATCAGTGTGTTTATCATCCCCATTGTCTTCAGAAGATTTCCGTAGGGATGAGAGGTTTGAAAATGATTCTTACTTTAACTCTGTCAATGGTAATAGATGTGATAATGGAAAAGATCTTGCAGATATACAGAGTATTATATCTGTCACGTCAGCAGGAGGGTTGCTTAATGACTTATCAAAATCCCCACAACCCCATGGAAATGATATAACACCTCCAGATTCTGGGATAAAATCATCAGATTCAGGAACAGGGGAAGAAGAACAGCAGGATTGCTTTGCGTCAGAGTTtcgtaaaatgaaattaaaagggGAATTTCCATGTCGTGTATGTACTCTCGTGTTTCCAAATCTACGTGCTCTCAAAGGTCATAATAGAGTTCATCTTACAGCCAGCTCCGGACTGTATCGATGTAACATGTGCCCATATTCCAATATCGATAAAGGAATTCTAGTGCGACACATGCGAACTCATAATGGGGACCGACCATATGAATGTGCTCTCTGCAATTACGCATTTACTACCAAGGCAAATTGTGAAAGGCATCTGCGTAACAGGCACTCAAAACTTTCTCGAGATGACGTAAAAAATTCCATTATATATCATCCTTCAGAAGATCCTATAAATGACCCTGAAATTCAGCCAAAGCTAAACACTCGAGAAGATGTGAAGAGATCTTTAGTTTTCAGCACCAACTTGTCAACTGATGAAACCAACAACATGGATCTCTCCAACCAAAGCTTTACAGAGGAACATCAAAAAGATGGTCAAGCAAAGTTGCATGAAGTTTCAAATAAACTCTCATTTACTGATAATGAACCAAATACTATAGGAAAACCTACCTTGGATGATCACAATGAAGAAATAAATCATACACCAACATTTTCTGTTAATGCTTTACCAAAAACTCTAGTCCCTATAACAAATATATCTGATTCTAACAACAAACAGATTCGTCCGTGGGTAACTCATGAAGTTGCAACAATGACTCATTTCAGAGACAACACGGTTGATGAAAAGCAGAGAAGGTATCGAACTGAGAGGCCATTTGCATGTGAACATTGTTCTGCACGATTCACTCTTCGCTCTAATATGGAGAGGCACATAAAACAACAACATCCTCAGTTCTGGAGCCAACGTCAGAGAAACAGTTCTGGATCTGTTGGACGCAGAAGTCATCCAGCAGCAGGGCTGACTTCTGTCAACCAGGTTTTGACTACTCAACAGTCTCAAGACTCTAGGAGTTCAGTGGATAGTTTCAGTCAAACTTCATCAAAAGGatctaatttttctataaatgttgTTTCAAGTGACCCAACAGATTATAGATCCATGCCTTTACTGGAATGGAGGGGTAGTGAAAAGATGCCAAAGATAGAAGAATCCTACACCGAGGAAGTGTTGGATAAAATTCACAAAACCAAAGATATATCTAGTGTTGGTGCTatcaacaatttaaataatatagctttTATTTCTGAGGAAGTAAGGTTTGCGATAGCTCAGCAGTTaaaatcaaaactacaccaGCTTCCTGCAGTACCTCTAGGAGAGGTACCTGGCATAAAATGTGAGGCGCGTGGTGACATGGATGAAGAAGATGAAAATGATGGATTGGTGATCGATGAAGAAAAAGGTGAAATTGAAGAAGGGAATGAAGGTAACCAGAAAGGAGTACAAACCAAAGAACAACAGAATGGAAGTAGGGATGAAGGAGTAGTGGATCTGGCAAGTGTATCAAGACTTTTGGACAACGCCACTACTCAGAATCAAGCATTCCAGCAGTATTTCCAGGGAACACAAGATGGTGATGGGGAAGAGGAAGGAACTGAATACGGAAGGGAAGAAGCAAGTGAGGATGATGAAGAAGGACTAGTAGCTGGAAGCAATAGTGAAGGAAACAACTCTGGCAGTGACGAAAACAGATCTGAGTCAGATATCAATCCAGGCACAGAGAAGAAGAAGAGCGCGTACTCCCTGGCACCCAATAGAGTCGCGTGCCCATACTGCCTTCGCAAATTTCCGTGGTCCTCATCTCTGCGTCGACATGTCTTGACACATACAGGACAGAAGCCATACAAGTGTCCACATTGTCCACTACTGTTCACCACAAAGTCGAACTGTGACCGTCATTTGCTCAGGAAACATGGCAGCACATCAGCCACAACTTCTAATAACAGTAACAACGGTGTTGAGACGTCTCAAGGAAACGGGACCCCCACTGGAGCATCAAATCCAAGCTACACCATGAGAAACGTTCCAGAGAGGCCTTTCAAGTGCAATTTCTGTCCAAGTTCTACGTTCTCGACACAGAGCAACTTGAAGAAACACGTCGCCACCAAGCACGGTAGCCACTCTTGCCCGACGAGTCCTGCAGCAGCTACCACTAGGAACACATATTCCTCTGGGGATGAGACCTATCATCAAACAACCAGAACAGTTGATACTCGTGGTGGTGGGGGAGATGATAGCCATGATAGTGTAAATGAAGATGTATCAGATGAAAGGTTGACATATCCTAATCCCGTCAACAGAACCCCTGAGGTTGGTGAAGGGGACATCGAGAGCGTGCCTGGTCATCCTGCGATAGATCTGAGAACTAGCATTCCTTCCCTTGGAGCTACACACGATAGTGTTGTGCCAAAGACTTTAATAGCGCTCGAGACTCATGGAGCAACCACATCTTCGGAGCTACCTTTTAAATGCCACTTGTGTGAAGGAAGTTACGCAGAAAGGCAGGAAGCTTTGGATCATATCCGGGAACATCACCCCACAGAGTTTGATCTACTTGTGACTAAAGGGGCACTGGAGGTATCTACACATGAGGAGAATAATGGGAATAGTCACATCACGTCACAGGAAGAAGGCAATGGAGGTGAAGAAAATTTGGAACAACTCAGAGGGAAGTTTCCAGACTATGCTAACAGAAAGGTAATGTGTGCATTCTGCCTGCGTCGATTCTGGTCCGCTGAAGATCTGCGGCGACACATGCGCACACACACGGGTGAGCGACCCTTCTCATGTGACATCTGTCGACGGCGCTTTACTCTGAAACACAGCATGCTGCGCCACCGTAAGAAACACAGCATCACCGGCACTTCGTACGTGTCTCCCAACTCTGAAGATGTCTCCGTTGTAAGTGGAGACGAAGACAACACTCAAACACCCCTCACACCTTCTCGCTCACTTTCAGACTCCTCAATCAAAACTCTTGAAAAACACgggttaaatttaacaaatcacAACAATAACACCATCGCCCCCACAAAGAGTTGTTCATGGGAGGGCAATAAAAATGACTTGACACTTTCAGCAGCGCAAATTCTAAGTTCAAGGTTGTTGTTAGAAAGAAAAGATGAGGCTGTTAGTACAGAAGAAGATACTGACTTGATCGGGAATCTTCTGGGGATACAGGACCGGTCCATCATCGACAAAGTTCTCTTGTCCAAGTCTGCAGATGATGCAGCCAAGTTGTTGGGTGTAAGGAACGCAAGTCAGGAGTAG
Protein Sequence: MGNESIHRESSQTDNNKYVRKQEPLNLQDTGRKSCESDVDTLEHNNECERLPNNSTDSKQFEVASKESIAINKKGYERLKDITETKNDNDKECDSLDMPENCSLDCLSSNSENSQMDDSDMKFACPICDMILSSQHEFTLHIRSHNNNSESLVYPLACLKNYTCRICGKGLSSSSSLDRHVLVHSGERPFKCMTCGVAFTTNGNMHRHMRTHNPSHVGDSLVLNSKCEYTSYESDGSSDSVGSSNSISANPRKSPHLDTSQAGPAKRRRVDSDGFLIESNNNTNKLSEPLLSIKSHVENGIKRKASDSLTPSDYEGEEIVRRNVNPVTYHQNEFVQQFQCPVCKRIDFASLYVLETHLEERHPDYKATCNQCDLIFKNHRALNLHRFMAQHDNSEEHNVVRAKKSKHINRASSVLGFRDLTFVDFSSEKFPYIAKVMCEQSMHRATSAFHKFQCQKCARAFPCGSALSIHRQACLTSREKMDFNHPYDPDSFHGDEFPSSDCDTPTDLSSKKKPRQHLRYEKSSDCESEEEQKREDFFAHLDLQTKSVCLSSPLSSEDFRRDERFENDSYFNSVNGNRCDNGKDLADIQSIISVTSAGGLLNDLSKSPQPHGNDITPPDSGIKSSDSGTGEEEQQDCFASEFRKMKLKGEFPCRVCTLVFPNLRALKGHNRVHLTASSGLYRCNMCPYSNIDKGILVRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHSKLSRDDVKNSIIYHPSEDPINDPEIQPKLNTREDVKRSLVFSTNLSTDETNNMDLSNQSFTEEHQKDGQAKLHEVSNKLSFTDNEPNTIGKPTLDDHNEEINHTPTFSVNALPKTLVPITNISDSNNKQIRPWVTHEVATMTHFRDNTVDEKQRRYRTERPFACEHCSARFTLRSNMERHIKQQHPQFWSQRQRNSSGSVGRRSHPAAGLTSVNQVLTTQQSQDSRSSVDSFSQTSSKGSNFSINVVSSDPTDYRSMPLLEWRGSEKMPKIEESYTEEVLDKIHKTKDISSVGAINNLNNIAFISEEVRFAIAQQLKSKLHQLPAVPLGEVPGIKCEARGDMDEEDENDGLVIDEEKGEIEEGNEGNQKGVQTKEQQNGSRDEGVVDLASVSRLLDNATTQNQAFQQYFQGTQDGDGEEEGTEYGREEASEDDEEGLVAGSNSEGNNSGSDENRSESDINPGTEKKKSAYSLAPNRVACPYCLRKFPWSSSLRRHVLTHTGQKPYKCPHCPLLFTTKSNCDRHLLRKHGSTSATTSNNSNNGVETSQGNGTPTGASNPSYTMRNVPERPFKCNFCPSSTFSTQSNLKKHVATKHGSHSCPTSPAAATTRNTYSSGDETYHQTTRTVDTRGGGGDDSHDSVNEDVSDERLTYPNPVNRTPEVGEGDIESVPGHPAIDLRTSIPSLGATHDSVVPKTLIALETHGATTSSELPFKCHLCEGSYAERQEALDHIREHHPTEFDLLVTKGALEVSTHEENNGNSHITSQEEGNGGEENLEQLRGKFPDYANRKVMCAFCLRRFWSAEDLRRHMRTHTGERPFSCDICRRRFTLKHSMLRHRKKHSITGTSYVSPNSEDVSVVSGDEDNTQTPLTPSRSLSDSSIKTLEKHGLNLTNHNNNTIAPTKSCSWEGNKNDLTLSAAQILSSRLLLERKDEAVSTEEDTDLIGNLLGIQDRSIIDKVLLSKSADDAAKLLGVRNASQE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445928;
90% Identity: iTF_01446920;
80% Identity: -