Basic Information

Insect: Timema shepardi
Gene Symbol: -
Assembly: GCA_902151425.1
Location: CABFVX010002740.1:42282-48654[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.7 2.4e+03 1.7 2.8 1 23 606 629 606 629 0.85

2 14 0.078 21 8.2 0.4 3 23 741 762 740 762 0.96

3 14 0.018 5 10.2 0.4 1 23 770 792 770 792 0.98

4 14 0.00011 0.031 17.1 3.3 2 23 795 816 794 816 0.97

5 14 0.00016 0.045 16.6 1.0 1 23 822 844 822 844 0.98

6 14 3.6e-06 0.00098 21.8 1.3 2 23 851 873 850 873 0.96

7 14 0.21 58 6.8 2.5 5 23 886 904 885 904 0.96

8 14 0.00021 0.056 16.3 1.6 2 23 910 932 909 932 0.96

9 14 0.039 11 9.1 0.0 2 23 948 968 947 968 0.97

10 14 8.7e-06 0.0024 20.6 0.4 1 20 974 993 974 996 0.92

11 14 0.00049 0.13 15.1 1.1 1 23 1004 1026 1004 1026 0.98

12 14 0.0032 0.87 12.6 2.9 1 23 1032 1054 1032 1054 0.98

13 14 2.5e-05 0.0069 19.2 5.3 1 23 1060 1082 1060 1082 0.98

14 14 0.00095 0.26 14.2 5.6 1 23 1088 1110 1088 1111 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.7	2.4e+03	1.7	2.8	1	23	606	629	606	629	0.85
2	14	0.078	21	8.2	0.4	3	23	741	762	740	762	0.96
3	14	0.018	5	10.2	0.4	1	23	770	792	770	792	0.98
4	14	0.00011	0.031	17.1	3.3	2	23	795	816	794	816	0.97
5	14	0.00016	0.045	16.6	1.0	1	23	822	844	822	844	0.98
6	14	3.6e-06	0.00098	21.8	1.3	2	23	851	873	850	873	0.96
7	14	0.21	58	6.8	2.5	5	23	886	904	885	904	0.96
8	14	0.00021	0.056	16.3	1.6	2	23	910	932	909	932	0.96
9	14	0.039	11	9.1	0.0	2	23	948	968	947	968	0.97
10	14	8.7e-06	0.0024	20.6	0.4	1	20	974	993	974	996	0.92
11	14	0.00049	0.13	15.1	1.1	1	23	1004	1026	1004	1026	0.98
12	14	0.0032	0.87	12.6	2.9	1	23	1032	1054	1032	1054	0.98
13	14	2.5e-05	0.0069	19.2	5.3	1	23	1060	1082	1060	1082	0.98
14	14	0.00095	0.26	14.2	5.6	1	23	1088	1110	1088	1111	0.95

Sequence Information

Coding Sequence: atgGAGAACGGCAGTGATTGCGTTTGTTGCCCTGTATGCACATTATACATGAGAGAAGGTGTTACCCTTCAAAGCCACTTGGACACTCATCCTAAAGATCAAGTGATTGCAGCGTTGGTGAAGGTTTCTAAGGGTAGAGAACATACTAGTTGTGGTGAATTAAGCACTCTTTCACCATCAAGCATTCCATTAAACCAAGCTCAAATTACTGGAGAggcaaataatttgtttacatctCCAAGTAGCAACCATTATACCACAGCAATCACCTACCAGCAGTTTCTAAACAGTAACACCTGCCAAGGGGGCCCCATGATACCTCAATATGTCTCAGTACCAACATTTCTTGCTGCTTCTGATTCTAGTCATCGCTCTTTGGACAAACCTGGAATTGTCCAGATGGTATACAACCCATTCTTGTTACAACCACAGCTTGGTTCTGTAGTGTCTCCTACACAGCAACACTTCTTGAGCCCATTTCTACCTCCCGCACCTTCCTTGATTCCCACATCCCCACCCCAGCAAGGTAATATTACAACCGCTACAACACTTGCTCAAACAACTCTTTCTTCCACACCGCCATCCACCTCTATATCACACTCGGCAAGCTTATCACTACCGGTCTGTCAGGTTTCTAGTTCTACTCTTGCCCATTCAACCTCAGTGTCAAACTCTCCACTTAAAGTCCTTCCTCATCTTCATGTTAATGAAACGAGACTCCCTCTGAGTACGGTCATGAGCAATTCTTCATATTGCTCAGATTTGCAGGATATGTCTAGTGAATGTTGTGTAGAGTCAACTCAAAATAgtatcattcaaaataaaatacatatacaagACCAAAGGACATTTGAGAATGCCGCGAGTACATCAAGAAATTTTGCTCAAGATAGACTAGTTTGTTCCCATGAAGAAACATTGTGTATGTCTAAAGTTGAAATTCCTGAATGTTTTGATATGTTGAATAAAAGAGTTGGACAAACTGAAGGCTGTAGTGAATTAAGAATAGAAACAGGTGAAACTGTTGAAGATAATGATGTTGAAGCATTGAGTCCTAGTTTAGAAGTTAAGAACGACCTAAATTTATCCACAGAAATTGAAAATTGCATTGGTGAAGATGATACTGAGAGTCTGGCAGAAGAACAGGAAATAGAAGAAATCTACCCATCAAATGGAAATATTTCTGAGAGAAGAGAAAGACTCCAAATTGTATCAATCACTAGACGGTCCTCAAGGTGTATTCAAGTTCCAGTCAGTGGTGAACCAGCTAGTAGCAACACAGTTTTGACTCTAGAATCTCCAGGGACTGTAAATATTATCGAGATTGATGGCATTCACATTCTGGTGCCAAGCGAATTTCTGGACAACACTGGAAAAATGCTGAAAGGGAAAGAGAGCTCTGGGTCTTTGACAGCACTCACCACAATCTCACCACATCAGATGATTGAAGACGTGGAGGTAGAAGTCACGACTGCAGCCAGTTTGGACATTCAGGCAGATGAGACTATGCCTCCTAAAGGCGAGCTCTCGGAACAGGAAAGTGTTGGTGGTAACGACAGTTCTCTCTGGGTTCAGGCTGTCAGAAATGAAGATGAAGATGTGTCTGCTTCATACGACCTATTGGCACGAGAAAGCTGGGAAGCGTCTGATGGCTCTGATGGTGAAGGCAACATGGACATAATTTCCACAGTTAACACTGTCACCCAACAAACTGGCAACATCAATGAGAACATCAAAGAAGGTGGTAAACCCCACAAAAACAAATCCACTTTGTCAAAGCAACAAACCCAGCGCAAATCAAAGGTTCTTCGTTCGTATATGTGCTGGACATGTGGTAATTCATTCAACTGTCCAAAGGAACGCCGTGTCCACCAAGCAGCATGTCACCCAGGGGAGGGTGCAAGTGGCCATTCCAGGGCTCTACCCAAAAAGCCGAGCGCTGGTAAGAGGAAGACTCGGAGTAGTAAGGTGAAAGAAGAAACCAATGAAGAGAGGAAACTTTGCATTGAGGCGGATCACACAAACTTTGAACAAGTGGTCGTCAAAACGGACAATGATCCTGGCATGCTGAAAGAAGATGTTAACATTAGCCAAGAAGTACAGATGTGTGTGGTTGACGAGGGTGGGGCAGAGTTCCCAGTTGAAATTGAACTAGAGTCTATAGAAGAGcagaataaaattgaaagtgAATTGATAGAAAGTCAGGATGGTAAGCGTTTATGTAATAAATGTCATCAAGTGCTCCCTTCGGACAAAGCGCTTAAAAATCATATTGCATCTGCACATATAAGAAGGAGCAACTCAAAATATACATGCATGACCTGTAAAGAAGACTTGGGTTCTGAATCCCAGTTAACTCTACACTACAGGGTACACCCATTAGAATGTTCACATTGCGGCAAGTATTTTTACCGGCGGCAAAACATGAGCCTCCATATTAGGCGACACCTTGGTATTAAACCTTATAAGTGTACTGTCTGTGATAAGGGCTTCATTACTAGACAGAAATTGTTAGAGCATAGCAATTCCCATACAGGTAATGCCCCTTTGAAGTGTCCTATGTGTGATGAAACATTCCGCCGCTACAGCAATCTTATACAACACAAAAATAAGTATCACCTGAAACTAAAGAAGAAGGTAAAAGATTTCATCTGCCACTGTGGTGAGATATTCCACTCTAAAAAGAAGTTGGTCTGGCATCAAGAGATTCACAGCGAGAAACCTAAGTCGTGTATGTATTGCAGCGAACGCTTTGTCCATGAAGCAAGCTTGACAAGACATATTCGCAGGGCTCATGATCAAAGCtacatttcaaaaaatactCGAGAGACTGAGAATATAGAGTGTCCAACTTGTGGGGGTATGTTTCTCAAGACATCACTTGCTGTTCACTTACGTGTTCATGCTGGACTTCGACCTTTCTCTTGTCCCATTTGTGGAAAAGATTTCACCACAAGATGGAATCTGCAGCTTCATCGCTGGACGCATGCGTCTCGTTCGTCCAAGCCGTTCAAGTGCACTCTCTGCAAAAGTGCTTTCATTCGTCGCTCAGACTACGTGTCACACATTAATTCACATCGCAATGTACGCCCATACACTTGCAATTTCTGCGGCGCGCAGTTTATACGAAAATACAATTGTATTCGGCATGTTCGAGAGCATGAGACAAACAAATCATACGCCTGCAGCATCTGCCACAAGACTTTCCACCGCAGTTACTACTTGAAGGAACACTTGCGAGTGCATAGCGGCGCCCGTCCGTTTGCTTGCCACATTTGCGGCAAAGCATCGACGACAAAGTCTAACCATAACAAACACATTAAGATTCATCATGCCAGGGAGCCAGTAAACACAGAGGGCTAA
Protein Sequence: MENGSDCVCCPVCTLYMREGVTLQSHLDTHPKDQVIAALVKVSKGREHTSCGELSTLSPSSIPLNQAQITGEANNLFTSPSSNHYTTAITYQQFLNSNTCQGGPMIPQYVSVPTFLAASDSSHRSLDKPGIVQMVYNPFLLQPQLGSVVSPTQQHFLSPFLPPAPSLIPTSPPQQGNITTATTLAQTTLSSTPPSTSISHSASLSLPVCQVSSSTLAHSTSVSNSPLKVLPHLHVNETRLPLSTVMSNSSYCSDLQDMSSECCVESTQNSIIQNKIHIQDQRTFENAASTSRNFAQDRLVCSHEETLCMSKVEIPECFDMLNKRVGQTEGCSELRIETGETVEDNDVEALSPSLEVKNDLNLSTEIENCIGEDDTESLAEEQEIEEIYPSNGNISERRERLQIVSITRRSSRCIQVPVSGEPASSNTVLTLESPGTVNIIEIDGIHILVPSEFLDNTGKMLKGKESSGSLTALTTISPHQMIEDVEVEVTTAASLDIQADETMPPKGELSEQESVGGNDSSLWVQAVRNEDEDVSASYDLLARESWEASDGSDGEGNMDIISTVNTVTQQTGNINENIKEGGKPHKNKSTLSKQQTQRKSKVLRSYMCWTCGNSFNCPKERRVHQAACHPGEGASGHSRALPKKPSAGKRKTRSSKVKEETNEERKLCIEADHTNFEQVVVKTDNDPGMLKEDVNISQEVQMCVVDEGGAEFPVEIELESIEEQNKIESELIESQDGKRLCNKCHQVLPSDKALKNHIASAHIRRSNSKYTCMTCKEDLGSESQLTLHYRVHPLECSHCGKYFYRRQNMSLHIRRHLGIKPYKCTVCDKGFITRQKLLEHSNSHTGNAPLKCPMCDETFRRYSNLIQHKNKYHLKLKKKVKDFICHCGEIFHSKKKLVWHQEIHSEKPKSCMYCSERFVHEASLTRHIRRAHDQSYISKNTRETENIECPTCGGMFLKTSLAVHLRVHAGLRPFSCPICGKDFTTRWNLQLHRWTHASRSSKPFKCTLCKSAFIRRSDYVSHINSHRNVRPYTCNFCGAQFIRKYNCIRHVREHETNKSYACSICHKTFHRSYYLKEHLRVHSGARPFACHICGKASTTKSNHNKHIKIHHAREPVNTEG*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446893;
90% Identity: iTF_01446893; iTF_01445915; iTF_01448881; iTF_01449884; iTF_01447837;
80% Identity: -