Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000003.1:8311538-8317930[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.2 1.6e+03 1.7 2.8 1 23 641 664 641 664 0.85

2 14 0.034 6.5 9.2 0.5 3 23 776 797 775 797 0.97

3 14 0.017 3.3 10.1 0.4 1 23 805 827 805 827 0.98

4 14 0.00011 0.02 17.1 3.3 2 23 830 851 829 851 0.97

5 14 0.00015 0.03 16.6 1.0 1 23 857 879 857 879 0.98

6 14 3.4e-06 0.00065 21.8 1.3 2 23 886 908 885 908 0.96

7 14 0.2 38 6.8 2.5 5 23 921 939 920 939 0.96

8 14 0.00019 0.037 16.3 1.6 2 23 945 967 944 967 0.96

9 14 0.036 7 9.1 0.0 2 23 983 1003 982 1003 0.97

10 14 8.1e-06 0.0016 20.6 0.4 1 20 1009 1028 1009 1031 0.92

11 14 0.00046 0.089 15.1 1.1 1 23 1039 1061 1039 1061 0.98

12 14 0.003 0.57 12.5 2.9 1 23 1067 1089 1067 1089 0.98

13 14 2.4e-05 0.0046 19.1 5.3 1 23 1095 1117 1095 1117 0.98

14 14 0.00089 0.17 14.2 5.6 1 23 1123 1145 1123 1146 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.2	1.6e+03	1.7	2.8	1	23	641	664	641	664	0.85
2	14	0.034	6.5	9.2	0.5	3	23	776	797	775	797	0.97
3	14	0.017	3.3	10.1	0.4	1	23	805	827	805	827	0.98
4	14	0.00011	0.02	17.1	3.3	2	23	830	851	829	851	0.97
5	14	0.00015	0.03	16.6	1.0	1	23	857	879	857	879	0.98
6	14	3.4e-06	0.00065	21.8	1.3	2	23	886	908	885	908	0.96
7	14	0.2	38	6.8	2.5	5	23	921	939	920	939	0.96
8	14	0.00019	0.037	16.3	1.6	2	23	945	967	944	967	0.96
9	14	0.036	7	9.1	0.0	2	23	983	1003	982	1003	0.97
10	14	8.1e-06	0.0016	20.6	0.4	1	20	1009	1028	1009	1031	0.92
11	14	0.00046	0.089	15.1	1.1	1	23	1039	1061	1039	1061	0.98
12	14	0.003	0.57	12.5	2.9	1	23	1067	1089	1067	1089	0.98
13	14	2.4e-05	0.0046	19.1	5.3	1	23	1095	1117	1095	1117	0.98
14	14	0.00089	0.17	14.2	5.6	1	23	1123	1145	1123	1146	0.95

Sequence Information

Coding Sequence: ATGGAGAACGGCAGTGATTGCGTTTGTTGTCCTGTATGCACATTATACATGAGAGAAGGTGTTACCCTTCAAAGCCACTTGGACACTCATCCTAAAGATCAAGTGATTGCGGCGTTGGTGAAGGTTTCCAAGGGTAGAGAACATACTAGTTGTGGTGAATTAAGCACACTTTCAGCATCAAGCATTGCATTGAACCAAGCTCAAATTACTGGAGAGGCAAATAATTTGTTCACATCTCCAAGTAGCAACCATTATACCACAGCAATCACATACCAGCAATTTCTAAACAGTAACACCTGCCAAGGGGGGCCCATGATACCTCAATATGTCTCAGTGCCAACATTTCTTGCTGCTCCTGATTCTAGTCACCGCTCTATGGACAAACCTGGAATTGTCCAGATGGTGTACAACCCATTCTTGTTACAACCACAGCTTGGTTCTGTAGTGTCTCCTACGCAGCAACACTTCTTGAGCCCATTTCTACCTCCCGCACCTGCCTTGATTCCCACATCCCCACCACAGCAAGGTAATATTACAACCACTACAACCCTTGCTCAAACAACTCTTTGTCCCACACCGCCATCCACCTCTATATCACAGTCGGCAAGCTTATCGCTACCGGTCTGTCAGGTTTCTAGTTCTACTCTTGCCCAGTCAACCTCAATGTCAAACTCTCCACTTACAGTCCTTCCTCATCTTCATGTCAATGACACTAGACTCCCTCCGAGTACGGTCATGAGCAATTCTTCATATTGCTCAGGTTTGCAGGATATGTCTAGTGAATGTTGTGTAGAGtcaactcaaaataaaatacatagacAAGACCAAAGGACATTTGAGAATGCCGCAAGTACATCAAGAAATTTTGCTCAAGATAGATTAGTTTGCTCCCATGAAGAAACATTGTGTGTGTCTAAAGTTGAAATTCCTGAACGTTTTGATATGTTGAATAAAAGAGTTGGACAAACTGAAGGCTGTAGTGAATTAAGAATAGAAACAGGTGAAACTGTTGAAGATAATGATGTTGAAGCATTGAGTCCTAGTTTAGAAGTTAAGAACAACCTAAATTTATCCACAGAAATTGAAAATTGCATTGGTGAAGATGATACTGAGAGTCTGGCAGAAGAACCGGAAATAGAAGAAATCTACCCATCAAATGGAAATATTTCTGAGAGGAGAGAAAGACTCCAAATTGTATCAATCACGAGACGGTCCTCAAGGTGTATTCAAGTTCCAGTCAGTGGTGAGGAATTTATTACCTCAGACAGCAGGTCCTCTTTTGACTCGTCAAAACACGATTCGTCAAGGGATGgtaaatttgaaaacataccatatgatttaaaagaaatggaaGTAGATTTGTTAACAAACACAGGTGAACCAGCTAGTAGCAACACAGTTTTGACTTTAGACTCTCCAGGGACTGTAAATATTATCGAGATTGACGGCATTCACATTCTGGTGCCAAGCGAATTTCTGGACAACACTGGGAAAATGCTGAAGGGGAAAGAGAGCTCTGGGTCTTTGACAGCACTCACCACAATCTCGCCACATCAGATGATTGAAGATGCGGAGGTAGAAGTCACGACTGCAGCCAGTTTGGACATTCAGGCAGATGAGACTATGCCTCCAAAAGGCGAGCTCTCGGAACAGGAAAGTGTTGGTGGTAACGACAGTTCCCTCTGGGTTCAGGCTGTCAGAAACGAAGATGAAGATATGTCTGCTTCATACGACCTATTGGCACGAGAAAGCTGGGAAGCGTCTGATGGCTCTGATGGCGAAGGCAACATGGACATAATTTCCACAGTTAACACTGTCACCCAAAAAACTGGCAACATCAAAGAAGGTGGTAAACCTCACAAAAACAAATCCACTTTGTCAAAGCAACAAACTCAGCGCAAACCAAAGGTTCTTCGTTCGTATATGTGCTGGACATGTGGTAATTCATTCAACTGTCCAAAGGAACGCCGTGTCCACCAGGCAGCATGTCACCCAGGGGAGGGTGCAAGTGGCCATTCCAGGGCTCTACCCAAGAAGCCGAGTGCTGGTAAGAGGAAGACTCGCAGTAACAAGGTGAAAGAAGAAACCAATGAAGAGAGGAAACTTTGCATTGAGGCGGATCACACAAACTTTGAACAAGTGGTCGTCAAAACGGACAATGATTCTGGCTTGCTGAAAGAAGATGTTAACATTGGCCAAGAAGTACAGATGTGTGTGGTTGACGAGGGTGGGGCAGAGTTCCCAGTTGAAATTGAACTGGAGTCGATGGAAGAGCAGAATAAAATTGAGAGTGAATTGATAGAAAGTCAGGATGGTAAGCGTTTATGTAATAAATGTCATCAAGTGCTCCCTTCGGACAAAGCGCTGAAAAATCATATTGCAACCGCTCATATAAGAAGGagaaactcaaaatatacatgCATGACCTGTAAAGAAGACTTGGGTTCTGAATCCCAGTTAACTCTACACTACAGGGTACACCCATTGGAATGTTCACATTGCGGCAAGTATTTTTACCGGCGGCAAAACATGAGCCTCCATATTAGGCGACACCTTGGTATTAAACCTTATAAGTGTACTGTCTGTGATAAGGGCTTCATTACTAGGCAGAAGTTGTTAGAGCATAGCAATTCTCATACAGGTAACGCCCCTTTGAAGTGTCCTATGTGTGATGAAACATTCCGCCGCTACAGCAATCTtatacaacataaaaataagtatCACCTGAAACTAAAGAAGAAGGTAAAAGATTTCATCTGCCACTGTGGCGAGATATTCCATTCTAAAAAGAAGTTGGTCTGGCATCAAGAGATTCACAGCGAGAAACCTAAATCGTGTATGTATTGCAGCGAACGCTTTGTCCATGAAGCAAGCTTGACAAGACATATTCGCAGGGCTCATGATCAAAGCTACATTTCAAAAAATACTCGAGAGACTGAGAATATAGAGTGTCCAACTTGTGGGGGTATGTTTCTCAAGACATCACTTGCCGTTCACTTACGTGTTCATGCTGGACTTCGACCTTTCTCTTGTCCCATTTGTGGAAAAGATTTCACCACAAGGTGGAATCTGCAGCTTCATCGCTGGACGCATGCGTCTCGTTCGTCCAAGCCGTTCAAGTGCACTCTCTGCAAAAGTGCTTTCATTCGTCGCTCAGACTATGTGTCACACATTAATTCACATCGCAATGTACGCCCATACACTTGCAATTTCTGCGGCGCACAGTTTATACGAAAATACAATTGTATTCGGCATGTTCGAGAGCATGAGACAAACAAATCATACGCCTGCAGCATCTGCCACAAGACTTTCCACCGCAGTTACTACTTGAAGGAACACTTGCGAGTGCATAGCGGCGCCCGTCCGTTTGCTTGCCACATTTGCGGCAAAGCATCGACGACAAAGTCTAACCATAACAAACACATTAAGATTCATCATGCAAGAGAGCCAGTAAACACAGAGGGCTAA
Protein Sequence: MENGSDCVCCPVCTLYMREGVTLQSHLDTHPKDQVIAALVKVSKGREHTSCGELSTLSASSIALNQAQITGEANNLFTSPSSNHYTTAITYQQFLNSNTCQGGPMIPQYVSVPTFLAAPDSSHRSMDKPGIVQMVYNPFLLQPQLGSVVSPTQQHFLSPFLPPAPALIPTSPPQQGNITTTTTLAQTTLCPTPPSTSISQSASLSLPVCQVSSSTLAQSTSMSNSPLTVLPHLHVNDTRLPPSTVMSNSSYCSGLQDMSSECCVESTQNKIHRQDQRTFENAASTSRNFAQDRLVCSHEETLCVSKVEIPERFDMLNKRVGQTEGCSELRIETGETVEDNDVEALSPSLEVKNNLNLSTEIENCIGEDDTESLAEEPEIEEIYPSNGNISERRERLQIVSITRRSSRCIQVPVSGEEFITSDSRSSFDSSKHDSSRDGKFENIPYDLKEMEVDLLTNTGEPASSNTVLTLDSPGTVNIIEIDGIHILVPSEFLDNTGKMLKGKESSGSLTALTTISPHQMIEDAEVEVTTAASLDIQADETMPPKGELSEQESVGGNDSSLWVQAVRNEDEDMSASYDLLARESWEASDGSDGEGNMDIISTVNTVTQKTGNIKEGGKPHKNKSTLSKQQTQRKPKVLRSYMCWTCGNSFNCPKERRVHQAACHPGEGASGHSRALPKKPSAGKRKTRSNKVKEETNEERKLCIEADHTNFEQVVVKTDNDSGLLKEDVNIGQEVQMCVVDEGGAEFPVEIELESMEEQNKIESELIESQDGKRLCNKCHQVLPSDKALKNHIATAHIRRRNSKYTCMTCKEDLGSESQLTLHYRVHPLECSHCGKYFYRRQNMSLHIRRHLGIKPYKCTVCDKGFITRQKLLEHSNSHTGNAPLKCPMCDETFRRYSNLIQHKNKYHLKLKKKVKDFICHCGEIFHSKKKLVWHQEIHSEKPKSCMYCSERFVHEASLTRHIRRAHDQSYISKNTRETENIECPTCGGMFLKTSLAVHLRVHAGLRPFSCPICGKDFTTRWNLQLHRWTHASRSSKPFKCTLCKSAFIRRSDYVSHINSHRNVRPYTCNFCGAQFIRKYNCIRHVREHETNKSYACSICHKTFHRSYYLKEHLRVHSGARPFACHICGKASTTKSNHNKHIKIHHAREPVNTEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446893;
90% Identity: iTF_01450877;
80% Identity: -