Tshe035022.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- -
- Assembly
- GCA_902151425.1
- Location
- CABFVX010003783.1:20413-44277[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00035 0.095 15.6 0.2 1 23 258 281 258 281 0.95 2 17 1.9 5.1e+02 3.8 3.3 1 23 286 311 286 311 0.97 3 17 0.78 2.1e+02 5.0 0.1 2 20 444 462 443 464 0.91 4 17 0.055 15 8.7 4.0 1 23 470 492 470 492 0.98 5 17 7e-07 0.00019 24.1 2.5 1 23 498 520 498 520 0.97 6 17 0.0028 0.77 12.7 4.6 1 23 526 548 526 548 0.89 7 17 0.00041 0.11 15.3 2.4 1 23 553 575 553 575 0.95 8 17 0.00022 0.059 16.2 6.8 1 23 583 605 583 605 0.98 9 17 6.4e-05 0.017 17.9 0.8 1 23 611 633 611 633 0.96 10 17 4.1e-05 0.011 18.5 5.2 1 22 639 660 639 660 0.96 11 17 0.0012 0.33 13.9 0.5 1 23 667 689 667 689 0.97 12 17 0.073 20 8.3 0.1 1 23 705 727 705 727 0.98 13 17 6.1e-06 0.0017 21.1 1.0 3 23 735 755 733 755 0.98 14 17 0.00064 0.18 14.7 0.2 1 23 761 783 761 783 0.98 15 17 2e-06 0.00054 22.6 0.2 1 23 789 811 789 811 0.98 16 17 0.0002 0.056 16.3 0.3 1 23 818 840 818 840 0.98 17 17 2.3e-05 0.0064 19.3 0.5 1 23 846 868 846 868 0.95
Sequence Information
- Coding Sequence
- ATGGACACCATGTGTGAAGATGAGACTATGGAATATGGTGATGACTTCAATCCTTATGGATATGAAGATACATATGATAGTACAGGTATAGACATAACATCAGAAAATGTCACCATGTATCAAAATATCAAAGAGGAACCACCAGTTGAATGTGAAATCGAAGAGTATCAGCTAGAAAATGACCCCCAGGTAACCGTAAATGATCTTATGCCAGTGAATGTATGTGAAGCCTGCATTCTTAAACTGGAAATATGTCACAATCTTGTTAAAGTCTGTTTGGAAGGTGATATGAAGCTCAGGACTCTCATGGGCCTTCCGACTGATATGGATGAACCAGAAGAAATAGATCTAGAACATGAATCTTATGGTGAGGTCCCAGTTGAACCAGCTATGTGTGAAGAAGCCCTTGGTAGTGAAATCCTGTCTAGAACAGTAAAGAGGAGAGGGGAGCGTAAAGCCCGAAATGCAACTACCAATAATCAGGCAACTTCGGGAATCAATCAGACTGCTGCTAACCTCACCGTAAATGGCCGGCAACCTCAAGACTATGGAGATATTACCGCTCTTCGTGTTAAAAGAGGGAGACCTAGAAAGATCGATCGGCAAATGTTGACAGAGGAAAACTTAACACAAAAGGTAGAAGAGGAGATTTTGGAAAATGAAACAAACCCAGATGATTACAGTGGTGAGGCGGAGCTGCAGGTAGACACAACACCCACTGTAATGGCGTCTCACGAAGGTACAAAACGACGTGTTACTCTAGGAGACATTTATCGCTGTGTCTATTGTGACAAGTCTTTCATTGGCAATGAAAGACTTCTAGCTCATCAGTCCTTGGCACATTCAGATGTAGTTTTTACCTGTACAAAGTGTCAACCTCATTTGTATTTCTACGAATCCAAGGATTTGTACGACAAACACATGCTACGCCATGTACTGGAAGACGAGGAGGAGGATCTCGAAGATGATTTATCTCGGTCTTCTTCACGGGATGAGGAAATTGAAGATGGTACTGAAACCACACCAGGTGAGCAAAAGAAGGGGGATCTTGAAATAACCAGTGTGTGTCAAGTTGAAGTTGAGGCTTCAAACATTAAAGAACCAACAAGTCCTAATATGCGTATAAAACTGTCCAAAGAATTTCAAGACATGAATGAAGATCTCCAGTCAAAGATTCTTGAAACCAttcaaaaaataacaactaCTAATAGAAcagaaaatgttgaaaacaaaattgGCGCTACAGGAGAAGAAAATGCTCCACTTAATCAAGACAGTATAAAATCAGCTACAAAAAAATCTAGGAAAAGAGCACAAATAACGGGCTGGTACTGCAGGCAGTGTGATCTCAAATTTGACACTGACACGGGTTTGATAGAGCACAAACAAGAGAAAGTTTGCACAGTGCATCAGTGCAAGTACTGCAAGAGACAGTGTCAGTCTGAGGCACTCCTGGTAGAACATGAACGCATGCACACCAACGAGAGGCCATATATGTGTGAATACTGTGGTAAAAATTTCCGCACGCAGAGCTATTTGCGCACTCACTTATATTCTCACAGCTTTGATTGTCAGTATATGTGCCCCCAGTGTGACAAGTCATTTACCAACAAGTCTGTGTACCAGTACCATTGCTCCAAGCATACTCAAGGGGAGTTTCTTTGTGACTTGTGTGGGAAGGTCCTCAAACACAAGGCTAGTCTTCAGATGCACAAGAAGAGACATCTCAACCCTGAATTCCTCAATTTCAGCTGTGATATATGTCACAAGACCTTTAAAAACAGATTCCACATGAGTGAACATCGTCGTGTACACACCAAAGAACGTCCCTTCAAGTGTCCCCAATGTACGAAGCAATTCCGCACATTGGCTCAACTTAAGCTACATTCAGCTGTTCACTCTGACATTCGTAAGCACAAGTGCACCACATGTGGCCGACGTTTCACACACTACAGCAATTTACTAAAACACCGTAAAACCATGTGCAGGCCCAACAAATTCATTTGCAACATTTGCTCTGACTCATTCTCCAACTCTCCGGATCTTTTCACTCACCGTCTGAGTCATACTCGACAGGATGGTGCGGCGACAACAACTTTGAAACCAGAATCTTATGAGTGTCCTGATTGTTTCAAGCTGTTGCCTTCCAGGGCTGCATATGGCACCCACAGGTTGACACACACCCTCGATGGTGTCTTTGGTTGTGAATTTTGTGGAAAGGTTTTCAAAAGTAAGATGTACCTGAATATCCATCTTCGAAAACATACCAATGAGTTGCCACACCAGTGCCAGTATTGTGATGCTGCCTTCACAATCCGCGCAAGTTTGGTAGTCCATGAGCGCATCCATACTGGTGAAAACCCTTATAAATGCGGAATGTGTGACAAAGCATTCCGCTCTAAGGTCAACCTTGTACAACATGTGCTTGTTCATTCAAATGAGCAGCGGCCGTATGCTTGTTCAGACTGTTCTTTGACATTCCAACGTCGTGATGCGCTTTTGATTCATAAACGCATTCATACCGGGGAGCTCCCTTACATGTGCAAGATTTGTGGAAGAGGTTTTAGACAAAGAGGAGATTACAATAAACACGAGGAACTACACTTTAAAAATGATGGTCAAGATCTAATGAGTGAAAGTGATGCAGAGTAA
- Protein Sequence
- MDTMCEDETMEYGDDFNPYGYEDTYDSTGIDITSENVTMYQNIKEEPPVECEIEEYQLENDPQVTVNDLMPVNVCEACILKLEICHNLVKVCLEGDMKLRTLMGLPTDMDEPEEIDLEHESYGEVPVEPAMCEEALGSEILSRTVKRRGERKARNATTNNQATSGINQTAANLTVNGRQPQDYGDITALRVKRGRPRKIDRQMLTEENLTQKVEEEILENETNPDDYSGEAELQVDTTPTVMASHEGTKRRVTLGDIYRCVYCDKSFIGNERLLAHQSLAHSDVVFTCTKCQPHLYFYESKDLYDKHMLRHVLEDEEEDLEDDLSRSSSRDEEIEDGTETTPGEQKKGDLEITSVCQVEVEASNIKEPTSPNMRIKLSKEFQDMNEDLQSKILETIQKITTTNRTENVENKIGATGEENAPLNQDSIKSATKKSRKRAQITGWYCRQCDLKFDTDTGLIEHKQEKVCTVHQCKYCKRQCQSEALLVEHERMHTNERPYMCEYCGKNFRTQSYLRTHLYSHSFDCQYMCPQCDKSFTNKSVYQYHCSKHTQGEFLCDLCGKVLKHKASLQMHKKRHLNPEFLNFSCDICHKTFKNRFHMSEHRRVHTKERPFKCPQCTKQFRTLAQLKLHSAVHSDIRKHKCTTCGRRFTHYSNLLKHRKTMCRPNKFICNICSDSFSNSPDLFTHRLSHTRQDGAATTTLKPESYECPDCFKLLPSRAAYGTHRLTHTLDGVFGCEFCGKVFKSKMYLNIHLRKHTNELPHQCQYCDAAFTIRASLVVHERIHTGENPYKCGMCDKAFRSKVNLVQHVLVHSNEQRPYACSDCSLTFQRRDALLIHKRIHTGELPYMCKICGRGFRQRGDYNKHEELHFKNDGQDLMSESDAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445871;
- 90% Identity
- iTF_01446826;
- 80% Identity
- -