Basic Information

Insect: Timema douglasi
Gene Symbol: -
Assembly: GCA_901482245.1
Location: CABEEJ010001064.1:21098-48504[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00043 0.1 15.4 0.2 1 23 385 408 385 408 0.95

2 17 2.3 5.5e+02 3.6 3.3 1 23 413 438 413 438 0.97

3 17 0.94 2.2e+02 4.8 0.1 2 20 571 589 570 591 0.91

4 17 0.067 16 8.5 4.0 1 23 597 619 597 619 0.98

5 17 8.6e-07 0.0002 23.9 2.5 1 23 625 647 625 647 0.97

6 17 0.0034 0.81 12.5 4.6 1 23 653 675 653 675 0.89

7 17 0.0005 0.12 15.1 2.4 1 23 680 702 680 702 0.95

8 17 0.00027 0.063 16.0 6.8 1 23 710 732 710 732 0.98

9 17 7.8e-05 0.019 17.7 0.8 1 23 738 760 738 760 0.96

10 17 5e-05 0.012 18.3 5.2 1 22 766 787 766 787 0.96

11 17 0.0015 0.35 13.7 0.5 1 23 794 816 794 816 0.97

12 17 0.089 21 8.1 0.1 1 23 832 854 832 854 0.98

13 17 7.5e-06 0.0018 20.9 1.0 3 23 862 882 860 882 0.98

14 17 0.00078 0.19 14.5 0.2 1 23 888 910 888 910 0.98

15 17 2.4e-06 0.00057 22.4 0.2 1 23 916 938 916 938 0.98

16 17 0.00025 0.059 16.1 0.3 1 23 945 967 945 967 0.98

17 17 2.8e-05 0.0065 19.1 0.6 1 23 973 995 973 995 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00043	0.1	15.4	0.2	1	23	385	408	385	408	0.95
2	17	2.3	5.5e+02	3.6	3.3	1	23	413	438	413	438	0.97
3	17	0.94	2.2e+02	4.8	0.1	2	20	571	589	570	591	0.91
4	17	0.067	16	8.5	4.0	1	23	597	619	597	619	0.98
5	17	8.6e-07	0.0002	23.9	2.5	1	23	625	647	625	647	0.97
6	17	0.0034	0.81	12.5	4.6	1	23	653	675	653	675	0.89
7	17	0.0005	0.12	15.1	2.4	1	23	680	702	680	702	0.95
8	17	0.00027	0.063	16.0	6.8	1	23	710	732	710	732	0.98
9	17	7.8e-05	0.019	17.7	0.8	1	23	738	760	738	760	0.96
10	17	5e-05	0.012	18.3	5.2	1	22	766	787	766	787	0.96
11	17	0.0015	0.35	13.7	0.5	1	23	794	816	794	816	0.97
12	17	0.089	21	8.1	0.1	1	23	832	854	832	854	0.98
13	17	7.5e-06	0.0018	20.9	1.0	3	23	862	882	860	882	0.98
14	17	0.00078	0.19	14.5	0.2	1	23	888	910	888	910	0.98
15	17	2.4e-06	0.00057	22.4	0.2	1	23	916	938	916	938	0.98
16	17	0.00025	0.059	16.1	0.3	1	23	945	967	945	967	0.98
17	17	2.8e-05	0.0065	19.1	0.6	1	23	973	995	973	995	0.95

Sequence Information

Coding Sequence: ATGGACACCATGTGTGAAGATGAGACTATGGAATATGGTGATGACTTCAATCCTTATGGATATGAAGATACATATGATAGTACAGGTATAGACATAACATCAGAAAATGTCACCATGTATCAAAATATCAAAGAGGAACCACCAGTTGAATGTGAAATCGAAGAGTATCAGCTAGAAAATGACCCCCAGAGGCAGCTAGACTACGAGAAGGCAGTGCTGATTTCAACATCTTTGGAGGCAGCCGAAAAGGATGCAGCGTCACTAGCCTTTGGACATAACACCGGTGGAACAGCTGATCGTCAATCCCAAATTCTTCGAATGTCGAAAAAGGAAGAGAGAAAAGGCGGTACCAGAGAAtcTTCGCCTGAAACTAGAGTAGAGGAGATAGAACCTAGTGTTAGAGAGCCATATCCCTCAGAACTAGATCCCAAACCTAATAGGGTAGGTTTGACATCTCCTAAGGCATCCAGGGGTGAGAATCATTCTCCATGCGTCCCCAGGGTTGAATCACATGAAAAGGGCAGTAGTCCAGAATCACACCCACCTCAGAGGATTGAAATCTCACCAGAAGTAACCGTAAATGATCTTATGCCAGTGAATGTATGTGAAGCCTGCATTCTTAAACTGGAAATATGTCACAATCTTGTTAAAGTCTGTTTGGAAGGTGATATGAAGCTCAGGACTCTCATGGGCCTTCCGACTGATATGGATGAACCAGAAGAAATAGATCTAGAACATGAATCTTATGGTGAGGTCCCAGTTGAACCTGCTATGTGTGAAGAAGCCCTTGGTAGTGAAATCCTGTCTAGAACAGTAAAGAGGAGAGGGGAGCGTAAAGCCCGAAATGCAACCACCAATAATCAGGCAACTTCGGGAATCAATCAGACTGCTGCTAACCTCACTGTAAATGGCCGGCAACCTCAAGACTATGGAGATATTACCGCTCTTCGTGTTAAAAGAGGGAGACCTAGAAAGATCGATCGGCAAATGTTGACAGAGGAAAACTTGACACAAAAGGTAGAAGAGGAGATTTTGGAAACTGAAACAAACCTAGATGATTACAGTGGTGAGGCGGAGCTGCAGGTAGACACAACACCCACTGTAATGGCGTCTCACGAAGGTACAAAACGACGTGTTACTCTAGGAGACATTTATCGCTGTGTCTATTGTGACAAGTCTTTCATTGGCAATGAAAGACTTCTAGCTCATCAGTCCTTGGCACATTCAGATGTAGTTTTTACCTGTACAAAATGTCAACCTCATTTGTATTTCTACGAATCCAAGGATTTGTATGACAAGCACATGCTACGCCATGTACTGGAAGACGAGGAGGAGGATCTCGAAGATGATTTATCTCGGTCTTCTTCACGGGATGAGGAAATTGAAGATGGTACTGAAACCACACCAGGTGAGCAAAAGAAGGGGGATCTTGAAATAACCAGTGTGTGTCAAGTTGAAGTTGAGGCTTCAAACATTAAAGAACCAACAAGTCCTAATATGCGTATAAAACTGTCCAAAGAATTTCAAGACATGAATGAAGATCTCCAGTCAAAGATTCTTGAAACCAttcaaaaaataacaactaCTAATAGAAcagaaaatgttgaaaacaaaattgGCGCTACGGGAGAAGAAAATGCTCCACTTAATCAAGACAGTATAAAATCAGCTACAAAAAAATCTAGGAAAAGAGCACAAATAACGGGCTGGTACTGCAGGCAGTGTGATCTCAAATTTGATACCGACACGGGTTTGATAGAGCACAAGCAAGAGAAAGTTTGCACGGTGCACCAGTGCAAGTACTGCAAGAGACAATGTCAGTCTGAGGCACTCCTGGTAGAACATGAACGCATGCACACCAACGAGAGGCCATATATGTGCGAATACTGTGGTAAAAATTTTCGCACGCAGAGCTATTTGCGCACTCACTTATATTCTCACAGCTTTGATTGTCAGTATATGTGCCCCCAGTGTGACAAGTCATTTACCAACAAGTCTGTATACCAGTACCATTGCTCCAAGCATACTCAAGGGGAGTTTCTTTGTGACTTGTGTGGGAAGGTCCTCAAACACAAGGCTAGTCTTCAGATGCACAAGAAGAGACATCTCAACCCTGAATTCCTCAATTTCAGCTGTGATATATGTCACAAGACCTTTAAAAACAGATTCCACATGAGTGAACATCGTCGTGTACACACCAAAGAACGTCCCTTCAAGTGTCCCCAATGTACGAAGCAATTCCGCACATTGGCTCAACTTAAGCTACATTCAGCTGTTCACTCTGACATTCGTAAGCACAAGTGCACCACGTGTGGCCGGCGTTTCACACACTACAGCAATTTACTAAAACACCGTAAAACCATGTGCAGGCCCAACAAGTTCATTTGCAACATTTGCTCTGACTCATTCTCCAACTCTCCGGATCTTTTCACTCACCGTCTGAGTCATACTCGACAGGATGGTGCGACGACAACAACTTTGAAACCAGAATCTTATGAGTGTCCTGATTGTTTCAAGCTGTTGCCTTCCAGGGCTGCGTATGGCACCCACAGGTTGACACACACCCTCGATGGTGTCTTTGGTTGTGAATTTTGTGGTAAGGTTTTCAAAAGTAAGATGTACCTGAATATCCATCTTCGCAAACATACGAATGAGTTGCCACACCAGTGCCAGTATTGTGATGCTGCCTTCACAATCCGTGCAAGTTTAGTAGTCCATGAGCGCATCCACACTGGTGAAAACCCTTATAAATGTGGCATGTGTGACAAAGCATTCCGCTCTAAGGTCAACCTTGTACAACACGTGCTTGTTCATTCAAATGAGCAGCGGCCGTATGCTTGTTCAGACTGTTCTTTGACATTCCAACGTCGTGATGCTCTTTTGATTCATAAACGCATTCATACCGGGGAGCTCCCTTACATGTGCAAGATTTGTGGAAGAGGTTTTAGACAAAGAGAAGATTACAATAAACACGAGGaattacactttaaaaatgATGGTCAAGATTTAATGAGTGAAAGTGATGCAGAGTAA
Protein Sequence: MDTMCEDETMEYGDDFNPYGYEDTYDSTGIDITSENVTMYQNIKEEPPVECEIEEYQLENDPQRQLDYEKAVLISTSLEAAEKDAASLAFGHNTGGTADRQSQILRMSKKEERKGGTRESSPETRVEEIEPSVREPYPSELDPKPNRVGLTSPKASRGENHSPCVPRVESHEKGSSPESHPPQRIEISPEVTVNDLMPVNVCEACILKLEICHNLVKVCLEGDMKLRTLMGLPTDMDEPEEIDLEHESYGEVPVEPAMCEEALGSEILSRTVKRRGERKARNATTNNQATSGINQTAANLTVNGRQPQDYGDITALRVKRGRPRKIDRQMLTEENLTQKVEEEILETETNLDDYSGEAELQVDTTPTVMASHEGTKRRVTLGDIYRCVYCDKSFIGNERLLAHQSLAHSDVVFTCTKCQPHLYFYESKDLYDKHMLRHVLEDEEEDLEDDLSRSSSRDEEIEDGTETTPGEQKKGDLEITSVCQVEVEASNIKEPTSPNMRIKLSKEFQDMNEDLQSKILETIQKITTTNRTENVENKIGATGEENAPLNQDSIKSATKKSRKRAQITGWYCRQCDLKFDTDTGLIEHKQEKVCTVHQCKYCKRQCQSEALLVEHERMHTNERPYMCEYCGKNFRTQSYLRTHLYSHSFDCQYMCPQCDKSFTNKSVYQYHCSKHTQGEFLCDLCGKVLKHKASLQMHKKRHLNPEFLNFSCDICHKTFKNRFHMSEHRRVHTKERPFKCPQCTKQFRTLAQLKLHSAVHSDIRKHKCTTCGRRFTHYSNLLKHRKTMCRPNKFICNICSDSFSNSPDLFTHRLSHTRQDGATTTTLKPESYECPDCFKLLPSRAAYGTHRLTHTLDGVFGCEFCGKVFKSKMYLNIHLRKHTNELPHQCQYCDAAFTIRASLVVHERIHTGENPYKCGMCDKAFRSKVNLVQHVLVHSNEQRPYACSDCSLTFQRRDALLIHKRIHTGELPYMCKICGRGFRQREDYNKHEELHFKNDGQDLMSESDAE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01447771;
90% Identity: iTF_01448801; iTF_01450802;
80% Identity: -