Tcri023518.1
Basic Information
- Insect
- Timema cristinae
- Gene Symbol
- -
- Assembly
- GCA_002928295.1
- Location
- CM009479.1:86463665-86488426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.00039 0.057 15.3 0.2 1 23 398 421 398 421 0.95 2 16 2.1 3.1e+02 3.6 3.3 1 23 426 451 426 451 0.97 3 16 0.87 1.3e+02 4.8 0.1 2 20 584 602 583 604 0.91 4 16 0.061 9 8.4 4.0 1 23 610 632 610 632 0.98 5 16 7.9e-07 0.00012 23.8 2.5 1 23 638 660 638 660 0.97 6 16 0.0031 0.46 12.5 4.6 1 23 666 688 666 688 0.89 7 16 0.00046 0.067 15.1 2.4 1 23 693 715 693 715 0.95 8 16 0.00024 0.036 16.0 6.8 1 23 723 745 723 745 0.98 9 16 7.2e-05 0.01 17.6 0.8 1 23 751 773 751 773 0.96 10 16 4.6e-05 0.0067 18.2 5.2 1 22 779 800 779 800 0.96 11 16 0.00075 0.11 14.4 0.5 1 23 807 829 807 829 0.98 12 16 0.082 12 8.0 0.1 1 23 845 867 845 867 0.98 13 16 0.00072 0.11 14.5 0.2 1 23 922 944 922 944 0.98 14 16 2.2e-06 0.00032 22.4 0.2 1 23 950 972 950 972 0.98 15 16 0.00023 0.033 16.1 0.3 1 23 979 1001 979 1001 0.98 16 16 0.0026 0.38 12.7 1.7 1 23 1007 1029 1007 1029 0.93
Sequence Information
- Coding Sequence
- ATGGACACCATGTGTGAAGATGAGACTATGGAATATGGTGATGACTTCAATCCTTATGGATATGAAGATACATATGACAGTACAGGTATAGACATAACATCAGAAAATGTCACcatatatcaaaatatcaaagagGAACCACCAGTTGAATGTGAAATCGAAGAGTATCAGCTAGAAAATGACCCCCAGGTAACCGTAAATGATCTTATGCCAGTGAATGTATGTGAAGCCTGCATTCTTAAACTGGAAATATGTCACAATCTCGTTAAAGTCTGTTTGGAAGGTGATATGAAGCTCAGGAATCTCATGGGCCTTCCGACTGATATGGACGAACCAGAAGAAATAGATCTAGAACATGAATCTTATGGTGAGGTCCCAATTGAACCAGCTATGTGTGAAGAAGCCCTTGGTAGTGAAATCCTGTCTAGAACAGTAAAGAGGAGAGGGGAGCGTAAAGCCCGAAATACAACCACCAATAATCAGGCAACTTCAGGAATCAATCAGACTGCTGCTAACCTCACCGTAAATGGCCGGCAACCTCAAGACTATGGAGATATTACCGCTCTTCGTGTTAAAAGAGGGAGACCTAGAAAGATCGATCGGCAGATGTTGACAGAGGAAAACTTGACACAAAAGAGTGGCTGGTTAGGGAAGCCCTGGATGGAAGATGGCAATTTTATGATGGGATGCATCatcaacacattaaaatacacagatgatctagcattgctggccaaAAATGAAGTTTTTCAGGAAATGAAGGATCAGCTGGTGGagatagggagaagatatggcataGAGATCAACATCGACAAGTCAAAAGTGattgtgatttcaaaaaatgaagagccactgaaaatcaaaattggaaaccagctGCTGGAAAACATTAAGCCTTTCAATTACCTGAGAAGTCTgttgacaaaggatgcctactgcaccaaggaaactAGGTTGAGGATCGCCATGGcaaaggaagctttcaacaagaagaggttactgctgactaACAAATTTTTAAGAACTGGTGTTTGTCCATCCACCACTTCTGCACAGGTAGAAGAGGAGAATTTGGAAACTGAAACAAACCTAGATGATTACAGTGGTGAGGCGGAGCTACAGGTAGACACAACACCTACTGTAATGGCTTCTCACGAAGGTACAAAACGACGTGTTACTCTAGGAGACATTTATCGCTGTGTCTATTGTGACAAGTCTTTCATTGGCAATGAAAGACTTCTAGCTCATCAGTCCTTGGCACATTCAGATGTAGTTTTTACCTGTACAAAGTGTCAACCTCATTTGTATTTCTACGAATCCAAGGATTTGTACGACAAGCACATGCTACGCCATGTACTGGAAGACGAGGAGGAGGATCTTGAAGATGATTTATCTCGGTCTTCTTCACGGGATGAGGAAATTGAAGATGGTACTGAAACCACACCAGGTGAGCAAAAGAAGGGGGATCTTGAAATAACCAGTGTGTGTCAAGTTGAAGTAGAGGCTTCAAACATTAAAGAACCAACAAGTCCTAATATGCGTATAAAACTGTCCAAAGAATTTCAAGACATGAATGAAGATCTCCAGTCAAAGATTCTTGAAACCAttcaaaaaataacaactacTAATAGAacagaaaatgttgaaaacaaaattgGTGTAACGGGAGAAGAAAATTCTCCACTTAATCAAGACAGTGTAAAATCAGCTACAAAAAAATCTAGGAAAAGAGCACAAATAACGGGCTGGTACTGCAGGCAGTGTGATCTCAAATTTGACACCGACACGGGTTTGATAGAGCACAAGCAAGAGAAAGTTTGCACGGTGCACCAGTGCAAGTACTGCAAGAGACAATGTCAGTCTGAGGCACTCCTGGTAGAACATGAACGCATGCACACAAATGAGAGGCCATACATGTGCGAATACTGTGGTAAAAATTTCCGCACGCAGAGCTATCTGCGCACTCACTTATATTCTCATAGCTTTGATTGTCAATATATGTGCCCCCAATGTGACAAGTCATTTACCAACAAGTCGGTGTACCAGTACCATTGCTCCAAGCATACTCAAGGGGAGTTTCTTTGTGACTTGTGTGGGAAGGTCCTCAAACACAAGGCTAGTCTTCAGATGCACAAGAAGAGACATCTCAACCCTGAATTCCTCAATTTCAGCTGTGATATATGTCACAAGACCTTTAAAAACAGATTCCATATGAGTGAACATCGTCGTGTGCACACCAAAGAACGTCCCTTCAAGTGTCCCCAATGCACGAAGCAATTCCGCACATTGGCTCAACTTAAGCTACATTCAGCTGTTCACTCTGACATTCGTAAGCACAAGTGCACCACGTGTGGCCGGCGTTTCACACACTACAGCAATTTACTAAAACACCGTAAAACCATGTGCAGGCCCAACAAATTCGTTTGCAACATTTGCTCTGACTCATTCTCCAACTCTCCGGATCTTTTCACTCATCGTCTGAGTCATACTCGACAGGACGGTGCGACGACAACAACTTTGAAACCAGAATCTTACGAGTGTCCTGATTGTTTCAAGCTGTTGCCTTCCAGGGCTGCGTATGGCACCCACAGGTTGACACACACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGTAAGATGTACCTGAATATCCATCTTCGCAAACATACCAATGAGTTGCCACACCAGTGCCAGTATTGTGACGCTGCCTTCACAATCCGCGCAAGTTTGGTAGTCCACGAGCGCATCCACACTGGTGAAAACCCTTATAAATGTGGCATGTGCGACAAAGCATTCCGCTCTAAGGTCAACCTTGTACAACACGTGCTTGTTCATTCAAACGAGCAGCGGCCGTATGCTTGTTCAGACTGTTCTTTGACATTCCAACGTCGTGATGCTCTTTTGATTCATAAACGCATTCATACCGGGGAGCTCCCTTACATGTGCAAGATTTGTGGAAGAGGTTTTAGACAAAGAGGAGATTGCAATAAACATGAGGaattacactttaaaaatgaTGGTCAAGATTTAATGAGTGAAAGTGATGCGGAGTAA
- Protein Sequence
- MDTMCEDETMEYGDDFNPYGYEDTYDSTGIDITSENVTIYQNIKEEPPVECEIEEYQLENDPQVTVNDLMPVNVCEACILKLEICHNLVKVCLEGDMKLRNLMGLPTDMDEPEEIDLEHESYGEVPIEPAMCEEALGSEILSRTVKRRGERKARNTTTNNQATSGINQTAANLTVNGRQPQDYGDITALRVKRGRPRKIDRQMLTEENLTQKSGWLGKPWMEDGNFMMGCIINTLKYTDDLALLAKNEVFQEMKDQLVEIGRRYGIEINIDKSKVIVISKNEEPLKIKIGNQLLENIKPFNYLRSLLTKDAYCTKETRLRIAMAKEAFNKKRLLLTNKFLRTGVCPSTTSAQVEEENLETETNLDDYSGEAELQVDTTPTVMASHEGTKRRVTLGDIYRCVYCDKSFIGNERLLAHQSLAHSDVVFTCTKCQPHLYFYESKDLYDKHMLRHVLEDEEEDLEDDLSRSSSRDEEIEDGTETTPGEQKKGDLEITSVCQVEVEASNIKEPTSPNMRIKLSKEFQDMNEDLQSKILETIQKITTTNRTENVENKIGVTGEENSPLNQDSVKSATKKSRKRAQITGWYCRQCDLKFDTDTGLIEHKQEKVCTVHQCKYCKRQCQSEALLVEHERMHTNERPYMCEYCGKNFRTQSYLRTHLYSHSFDCQYMCPQCDKSFTNKSVYQYHCSKHTQGEFLCDLCGKVLKHKASLQMHKKRHLNPEFLNFSCDICHKTFKNRFHMSEHRRVHTKERPFKCPQCTKQFRTLAQLKLHSAVHSDIRKHKCTTCGRRFTHYSNLLKHRKTMCRPNKFVCNICSDSFSNSPDLFTHRLSHTRQDGATTTTLKPESYECPDCFKLLPSRAAYGTHRLTHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKMYLNIHLRKHTNELPHQCQYCDAAFTIRASLVVHERIHTGENPYKCGMCDKAFRSKVNLVQHVLVHSNEQRPYACSDCSLTFQRRDALLIHKRIHTGELPYMCKICGRGFRQRGDCNKHEELHFKNDGQDLMSESDAE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01448801; iTF_01450802;
- 90% Identity
- -
- 80% Identity
- -