Tshe005406.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- ttk
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000255.1:188097-196926[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6e-15 1.8e-12 49.8 0.3 8 102 34 122 29 128 0.89 2 3 7.8e-18 8.6e-15 57.3 0.4 5 102 149 246 146 251 0.89 3 3 3.9e-14 4.3e-11 45.4 0.3 3 88 294 379 292 392 0.87
Sequence Information
- Coding Sequence
- ATGGAGGATGTGCCAACAGACACAGCAACCTATCACTTCATTCAGTGGGAGAATCACTTCCTTTTTCTGATGTCAACTCTCTTAGGATACACATATAGCAAAACGTTGACTGACATAACATTAGCGTGCGGCAATGTACAAATGTTTGCCCACAAAACCGTGCTATCTATTCTCAGTCCCTATTTAAAAGTTACTCTCAAAAGTAATTGTTccaaatgtttgattttaatgAACAGTAATGAGACAGTCTTACCTATCATGTTGGATTTCATATACAAAGGCTCTGTCTCGATGGCAAGAAGTTACGTTGAACTTCTTGTTGACATGGCGGGAGTCTTAAAACTTGACAGCTTTTCAGATACTAAGATTGAGTATATAGATGATTTAGCTTACTTGTCATGGTCTAACCATCAGGAGGTCATTCTTGGTAACCTGTGGGGTTCGCGGGATGACCCTTCCCAGTGCGATTTAATTTTTGTCACGAGTGACTTACACCATGTCTATGCACACTCTTGTATTTTGGCTGCGTGCACAAAGTTTATGTTGGATAGTTTGGCCAAACACTTCCaagtgaaaaataaaccttGTATATATGTTCTACATGAAGTCCACAGCCAAGATTTGGAACTTGTACTGCAGTTTTGCTACAAAGGACGTGTTTCCATTGCAAAAGAAAATCTGCAAAATGTCTACAATGTCGCAGAGATGTTAAGGATTGATCACTTGTGTGAAATACTTTCTTCAATAAATCCTTTCATTAAGAATAGTTCCATCTCCAAAAATCAGCGGTCCACAGGCGTTGCCACTAAGATAACATCTTATGAATCTAGAACATTAAAAACAACAGATAAACTCTCACAGATTCAAAGCGTCTTTTTAAAACTTCTTGAAATGGAGAGCCTTACGGACATAGTTTTCCATAAGGACAAGTGTTATTTAAAGGCACACAGTGTCATTTTGTGTACCTTCAGTGGATATTTCAGGAAGTTGGCAGAAAATATATGTGAAGATATGAAAGATATTGTCGTCTTGGTGAAGGACTTGACAAGTCAGGACTTGCAAGCCTTCCTGGACTATATCTATAAAGGTGAAGTAGAGTTCTGTGGTAGTGAAGAAGAGTTCAAAGCCGTCATGTCTGGATGGATTGACTTTGACATGTTGCCAATCTGTGATGCTCAACCTTGCCTAACTTTGAGTGGTGTGTTAGTGGAGGAGTTGTCCCTTTATAGCTTGAAAGaTGATGACCTTCTAAAGAATGAGCATCTAAATATGGGGAGCAATATCTCTACACTCATCAGTACCAACACAGAAAGTAGCTCTCCATTACTGGAGACAGATGCATCATCTCTGCCTGAAACATATTTACCTATCTCCAAGCCTAAGTATTTGATAGCGCAGGACACACCTCAAAATAAGGTTTCTTTAGCCCGGTCAGAAACATCAGATGGCATGCCCAAATTGAAGTATTGTGAGATGGAGGATGCTTCATCCATAGAACATGGCTTACCTGGTACTGTGAAGGATTTATCACTTAATGCGGAAGACATTGTTGGATTGGAGGTTCCAGAGCACAAGAACAAGGTGGATGAGAGACAGGAGGTGAGGAGTGGTGCTGACATTTGCCAGACTTGCCAGCTCCGGTTTGACAGCCGGTCAGACTTCAGGAAGCACCTAATAGTGCACCCTGATGGGAAGATGCTTAGGTGCGAGTACTGCTCAAAGGGCTTCCTCAAGCCCAGCCATCTGAAAATTCATCTCCGTTCTCATACCGGGGCACGTCCATTCCAGTGCCAGTCCTGTGGGAAACACTTAATTTCTAAGAGTTCTCTCACGAAACACCTTCTAACCCACAAGAGGAACAAGGAAGATATGTTCGCATGTGATATATGTTCCAAGTCTTTCCTCACAAAGGAATACCTCGTGGAACATATACGTGTTCACACAGGTTCCAAGCCTTTTCAGTGCTCTCAGTGTCCAATGAGTTTTGTTGGGCGGACAGGTTTGAACCACCATGTGAAGAAGCATGCCAAGGAGGAAGATAAGAATGATACAGTCTGCGATATATGTGGGAAAACCTTGTCTCGACATGCCCTATGGGGACACATAAAAACCCACAAGAAGATGGAACGTTGTGACCTTTGCGGCAAGGTCTTCTCGACAACAACGGCTCTGAAGATTCACTCAAGGACATCCCACTTGGGCCAGAGGGACCACCAGTGTGAGAAATGtggcaaaatatttttgcagtGGAGCCATCTTTCCAGGCATATAAAGTCGCACACACCTAAGCCTCAGCAAACAAAGGGGAATTTCTCCTGCAAGGAATGTCTAAAGACGTTCAAGAAGGAGAAAACTATCTTGTATCACAAAGAATGTGAGCATAAGGAACCAGGTGAATGTATCTATCCTTGTGACTTCTGTCCAAAACGTTTTGTCGGTCGTAGTACAGCCACCTACCACATGAGGTCCCACACAGGTACTTGTCCCCATGTCTGCACGAGCTGTGGTAGAGGGTTCATCCGCCCTGACTCTCTCAGGCTACATATGGCGAGGCACCGTGGTGAGAAGCCGTATGCTTGTTTGGTTTGTGGCCGCAAGTTCACCAGCAAAAGGTCTATGAACAAACATGCAGGTCTTCATAAAGCTGCACCTCCTCTCGATAAACATCTCTCTGCGCCTCATCATTGTgggatatgtaaaaaaaactttgggaCAGAAGATGAACTAACAAATCACTCACAGAGCCATGTTGGTGCAAGACCGTTTCGCTGTACTGTTTGCCGCAAAACTTTTCGTTATCTGGATAGCCTTAAAAGACATGCTAGAGTACATTCTACGGTGGTTCCTGATGCCCCTATTGAGCTCCAAACATTGTACGCACTACAAGTCAATGGTCAGCCACTTGAACACGTCGGTGAATTGAATGAAGGAGGAAAGTTGACCCCACAACAAAGTTATATGAGTGAGACAGTAATTGAAGTCAGTGAAGATCTTATTTCGACTGGCCACAAAGAGATAATTATTTCTGATAGTGTTGTAATGGAGGATGGAATATGTTTGTCTGTAGTAGAAGGTAAGACTAGCCTTGGTATGAGCTTGGCACCAAAGAGACCTTACAGCATAACAATTGATGGTAATCTTTGTTGTAACACTGACAACTCTGTACTAAACTTAATCCCTCAAGAGAGTGAAATCTCAGTTATTTCCTCAGTACCTCTAGAGTCTTCGCCACCACTTCACTATCCAAACAAACCCTGGAACTTCCCGCATTAG
- Protein Sequence
- MEDVPTDTATYHFIQWENHFLFLMSTLLGYTYSKTLTDITLACGNVQMFAHKTVLSILSPYLKVTLKSNCSKCLILMNSNETVLPIMLDFIYKGSVSMARSYVELLVDMAGVLKLDSFSDTKIEYIDDLAYLSWSNHQEVILGNLWGSRDDPSQCDLIFVTSDLHHVYAHSCILAACTKFMLDSLAKHFQVKNKPCIYVLHEVHSQDLELVLQFCYKGRVSIAKENLQNVYNVAEMLRIDHLCEILSSINPFIKNSSISKNQRSTGVATKITSYESRTLKTTDKLSQIQSVFLKLLEMESLTDIVFHKDKCYLKAHSVILCTFSGYFRKLAENICEDMKDIVVLVKDLTSQDLQAFLDYIYKGEVEFCGSEEEFKAVMSGWIDFDMLPICDAQPCLTLSGVLVEELSLYSLKDDDLLKNEHLNMGSNISTLISTNTESSSPLLETDASSLPETYLPISKPKYLIAQDTPQNKVSLARSETSDGMPKLKYCEMEDASSIEHGLPGTVKDLSLNAEDIVGLEVPEHKNKVDERQEVRSGADICQTCQLRFDSRSDFRKHLIVHPDGKMLRCEYCSKGFLKPSHLKIHLRSHTGARPFQCQSCGKHLISKSSLTKHLLTHKRNKEDMFACDICSKSFLTKEYLVEHIRVHTGSKPFQCSQCPMSFVGRTGLNHHVKKHAKEEDKNDTVCDICGKTLSRHALWGHIKTHKKMERCDLCGKVFSTTTALKIHSRTSHLGQRDHQCEKCGKIFLQWSHLSRHIKSHTPKPQQTKGNFSCKECLKTFKKEKTILYHKECEHKEPGECIYPCDFCPKRFVGRSTATYHMRSHTGTCPHVCTSCGRGFIRPDSLRLHMARHRGEKPYACLVCGRKFTSKRSMNKHAGLHKAAPPLDKHLSAPHHCGICKKNFGTEDELTNHSQSHVGARPFRCTVCRKTFRYLDSLKRHARVHSTVVPDAPIELQTLYALQVNGQPLEHVGELNEGGKLTPQQSYMSETVIEVSEDLISTGHKEIIISDSVVMEDGICLSVVEGKTSLGMSLAPKRPYSITIDGNLCCNTDNSVLNLIPQESEISVISSVPLESSPPLHYPNKPWNFPH*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01450826; iTF_01448647; iTF_01445865; iTF_01445748; iTF_01448820; iTF_01446688; iTF_01446844;
- 90% Identity
- iTF_01450826; iTF_01448647; iTF_01445865; iTF_01445748; iTF_01448820; iTF_01446688; iTF_01446844;
- 80% Identity
- iTF_01450826;