Tshe012223.1
Basic Information
- Insect
- Timema shepardi
- Gene Symbol
- tfip11
- Assembly
- GCA_902151425.1
- Location
- CABFVX010000746.1:56421-81134[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-96 7.7e-92 310.2 20.3 1 275 412 678 412 678 0.97 2 2 0.12 5.9e+03 -1.0 0.0 157 189 690 721 683 728 0.72
Sequence Information
- Coding Sequence
- ATGGCAGATGAAGAGGTGATGAAGTTTGAGATCACCGACTATGATCTCGACAATGAATTCAACATAAACAGGCCAACTCGCAAGATCAGTAAAAACCAGCAGATCTACGGTATCTGGGCTGATGACAGCGATGGAGAAGAAGATGCCAGTGGCCCCAGTAGGCCCAGTTTCAAGGGTTCGAGCAGAGGAAAAGCCAACTATGCTGCTCCTGTGAGTTTTGTGGCAGGAGGAGTGCATCAGGTGGGCAAGAAGAAAGAACCCGAGAATAAAAAGGAGAAGAAGAGTGATGATGAAGATGACAGTGAGGATGAGAACAGCAATAGAGGGGCCCCAGGGACCAGGAGGCTGGCGGCCATGGACATCTCAAGCGAGGAAGAGGAAGAAGAGGAACCAAGGCACTCTCGCAGTTCCAAGTCTCGCCACCAGGAGGTGGAGGTGCAGGGAGAGATTGCAGGACTGCGCAAGAAGAGGCAACCAATCAACACTGCCCTCATAAGTCAAGGAGTTGGGGGATGGGAGCGTCATACTAAGGGCATTGGGGCTAAGCTGCTTCTACAGatgGGTTTCCAACCAGGAAAAGGTCTTGGTAAGGCTTTGCAGGGAATCTCTGCTCCAGTGCAGGCACACTTGAGGAAGGGTCGTGGAGCTATCGGTGCGTACGGCCCAGAGAAGAAGACAAATATTGCAGACACAAAGGATGACTCCGAGGAGGAAGAGGCGCGTGAGTTTGTTGAGAAGTTGTCCCATTGGAGGAAGGCCGATTCGGGCCAAAAGAAGGTGAAGGTGAAGTATGTATACAAGAGCGTAGACGAGGTGTTGGAGCAGGGCAAGTCTCGGCCAATCAAGAGGGACCACAGTAACCTAAGCAAGGTGAAGGTGATTGACATGACGGGACCACAGAAACGAGTGCTAAGCGGATATCACGCCATTGCTGGACAGCAGCGCCCAGCGGATGAATGGGAGTATCGCAAGGACAAGACCTTCCACAACTTCTCCTTGCCTGAACTACAACACAACTTGAACCTTTTGATGGACATGTGTGAGCAGGATATAATTCAGAATAACCAAAAGCTGAAGTATGCAAGTGACCGTCTCGTGTCTCTGGAGCATGAAGAACAGTCATTATCAACAGGGGTGGAGCTCGAGGCGACCCATATTAagaccctggaaggtgtgttgGATATAGTCCAGAACATGATAAACAAGAGTGACAACAAGGAGGACTCTCTGACTCTAGACCAGGCCGCAGAGGCCTTCAAGGAGCTGCAAGAAAAGTTCTACGAGGAATATCGTCTTTACGAGCTAGGAGAGTTGGCTGTGAGTTTGGTAGCGCCCCTTGTCAAGGAGAAACTTAGTACTTGGAGACCCTTGGAGAGCCCCACAGAACCCCTGAACCTCTTCACACAGTGGCGGGAGATACTCCAGGCTGACCAGGGGGCTCTCTCGGTTACACAAGACCCCTACCACAAGCTGCTCTGGGAGTCTTGGATGCCGAGTCTACGGATCACTGTCAGCACTTGGAATTGCCGCGTGTGTGAGCCTCTGGTGGACTTGATCCAAGTATGGATCCCTCTACTGCCAGGATGGATACTAGACAACATCCGGGAACAGCTTGTACTGCCCCGGATAACAAAAGAGGTGGAGGACTGGAACCCTATGACTGATACAGTCCCTATCCATGCCTGGATACACCCTTGGCTGCCGCTTTTGGGTGTGCGGCTTGAAACAAGTGTGTTCCCAATGATCAGACATAAGCTGAGCAAGGCGCTGGTTAGCTGGCATCCATCTGACCGCTCGGCCCGCCTTATGCTGCTTCCATGGCACAGGGTGTTCTCCCGAGGCGAGATGGAGGCTTTCCTAGTGAAGAACATTCTCCCCAAACTGCAGCTGGCCCTACAGGAGCTGGTCATAAACCCTCACGAGCAACATCTAGAGCAGTGGAATTGGGTCATGGAATGGAAAGACCTCCTACCTCTACACTCGCTTTCTGGGGTCcttgaaaaacactttttcccTAAGTGGCTGCAGGTGCTTACTTTGTGGCTCAACCACTCCCCCAACTATGACGAGATCACCCACTGGTACATGGGCTGGAAGAATATGGTCTCCGAGAGCCTTCGCGCCCAGCCTGGTATCAAGGAACAGTTCAACAAGGCGCTAGAGCTGATGAACCGGGCAGTGAGCTCTGGTGGACAGTCAGGGAACCAGCAGCCAGGAGCAGTTGAGTCTGTTTCTTACCTGACCAACATCGAACAAAGCCAACTCCCAGGACAGAGGGTTCGAGACAGAGAGTCTCGATATGAGCTCTTGGCGGAGGCGGTGAGGACAGCAAGTCAGGTGCCCCAGGGGTTCAAGGAGCTAATACAGAAACGCTGCGAGGAGCAAGGACTACTCTTCGTCCCTCTCACCAACAGGTATCGCGAGGGCAAACAGATCTACCGTTGCGGTAACATACAGCTCTATGTTGACCGTAACGTAGCATTTGTCAGCGACAACAGTGGGGCGAGTTGGAACCCCAAGTCACTCAACGCAGTCCTAGACATGGCTTCGTAA
- Protein Sequence
- MADEEVMKFEITDYDLDNEFNINRPTRKISKNQQIYGIWADDSDGEEDASGPSRPSFKGSSRGKANYAAPVSFVAGGVHQVGKKKEPENKKEKKSDDEDDSEDENSNRGAPGTRRLAAMDISSEEEEEEEPRHSRSSKSRHQEVEVQGEIAGLRKKRQPINTALISQGVGGWERHTKGIGAKLLLQMGFQPGKGLGKALQGISAPVQAHLRKGRGAIGAYGPEKKTNIADTKDDSEEEEAREFVEKLSHWRKADSGQKKVKVKYVYKSVDEVLEQGKSRPIKRDHSNLSKVKVIDMTGPQKRVLSGYHAIAGQQRPADEWEYRKDKTFHNFSLPELQHNLNLLMDMCEQDIIQNNQKLKYASDRLVSLEHEEQSLSTGVELEATHIKTLEGVLDIVQNMINKSDNKEDSLTLDQAAEAFKELQEKFYEEYRLYELGELAVSLVAPLVKEKLSTWRPLESPTEPLNLFTQWREILQADQGALSVTQDPYHKLLWESWMPSLRITVSTWNCRVCEPLVDLIQVWIPLLPGWILDNIREQLVLPRITKEVEDWNPMTDTVPIHAWIHPWLPLLGVRLETSVFPMIRHKLSKALVSWHPSDRSARLMLLPWHRVFSRGEMEAFLVKNILPKLQLALQELVINPHEQHLEQWNWVMEWKDLLPLHSLSGVLEKHFFPKWLQVLTLWLNHSPNYDEITHWYMGWKNMVSESLRAQPGIKEQFNKALELMNRAVSSGGQSGNQQPGAVESVSYLTNIEQSQLPGQRVRDRESRYELLAEAVRTASQVPQGFKELIQKRCEEQGLLFVPLTNRYREGKQIYRCGNIQLYVDRNVAFVSDNSGASWNPKSLNAVLDMAS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01445671;
- 90% Identity
- iTF_01445671;
- 80% Identity
- -