Basic Information

Insect: Timema monikensis
Gene Symbol: bab2
Assembly: GCA_902151445.1
Location: CABFVZ010001097.1:90936-107199[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00038 0.21 13.4 0.1 1 36 264 299 264 306 0.87

2 4 6.3e-10 3.5e-07 31.9 0.0 3 39 316 351 314 361 0.92

3 4 0.79 4.4e+02 2.8 0.0 23 38 392 407 376 414 0.77

4 4 5.5e-10 3e-07 32.1 0.0 5 37 435 467 433 473 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00038	0.21	13.4	0.1	1	36	264	299	264	306	0.87
2	4	6.3e-10	3.5e-07	31.9	0.0	3	39	316	351	314	361	0.92
3	4	0.79	4.4e+02	2.8	0.0	23	38	392	407	376	414	0.77
4	4	5.5e-10	3e-07	32.1	0.0	5	37	435	467	433	473	0.89

Sequence Information

Coding Sequence: ATGGGGGATAAATCTCAGAAGTTCTGTCTCAAGTGGACCAACTACCAGCATCACCTCTCCGAGAGCTTCATCTCACTCTTACAGACCGAATCTATGGCCGATGTCACGCTTAGCGCGCAGGGGAAGAGAATACATGCACACAGAATTGTACTGTCTGTATGCAGTCCATTATTCCAGGCTGTGGGACCAATGTTTGACATGCCTGCAGGCTCCTGTTCTCCTTGTCTGTCCACAGGAGCTTTTGTCCAACTGCCAGGACCCACAGCCTTTCTTCATTGTACTCTAACCTCCTTGTCTGTCCACAGGAGCTCTTGTCCAACTGCCAGGACCTACAACCTTTCTTCATTGTACTCTAACCTCCTTGTCTGTCCACAGGAGCTCTTGAGCTTTTGTCCAACTGCCAGGACACCACATCCCGTCATCATCTTCAGCGAGATGAATTTCAATGACATTTGTTCCATTGTCGAGTTTGTGTACAGAGGAGAGCTGAGCATTGGAGGGGATCGCATGACTTCTGTTCTGAAGGTTGCAGAGGAACTCAAAATTAGAGGACTGATGTGGGTGCTGGAGGAAGTGGAGTTGACCCCCGAGGGGAACTTGGTGGACCACAACACATGCGCGGAGGAGCACCTACATGAGCAAATGGGGGCACCGACAGCGAATGGCGCCATTCAAGGGAAGACAACCCGAACTGATGGAACTAAACGCTTGGCCAAAAAGGGTGGAGGCAAAGTTTTAGATGAAGATAGGAAGAGAAGACGAAGGAGAGACTCTATCAAAAAGGAGTAcagTGAGGAGAGCATTGCGCAGGCCTTGGAGGACCTCAAGTCTGGCCGTACGCTCGTGGAGACAGCCATCGCGCACAATGTCCCCCGCTCCACACTTTATGTACGGGCACGCACACAGCACGTGTCACTGGCCTACACGAGACAGGAGCACTCAGGAGAGATCATAAAGGCGGCTGTGCAGGCTGTTGTAGACGGCGCGAGCCTACAGAAAGCATCGGAGAAGCACAAGATTCCCAAGACAGTATTGTGGCGCCGTGTACAGAAGGAACTGGGTAGGTACGGTATCTCCCACCGGCGTGGTGCCGGTACCAGGACGCCATCCAGGTCTGAGAAGAGGCTAGCTGCTATCGAGGCGCTCGAGCAGGGTGACACACTCACCACAGTCTCCAAGCAGTTCCAGATCCCCAAGACGACCTTGTTTCGTGAAAAGACTCGGCTGGTGGAGGCGGGCAGACTCCCCTGGTCCTGTCTGCGGAAGAGAGACCCGGAATATGACGGGAAGCACCAGCGGAGACTAAAGGATGCAGTGACGGCATGCATGGAGGGCAAGATGTCCCAGGCTACAGCCTCTATGACTTACCAGGTTCCGAAGACAACGATATGGCGACGCCTGCACAAGGGTTCTGTCAAAGGGTCCCAGGAGTCTCCAGAGGGAGAGGAAGTGGATGATCCCGAGTCCAAGCCAACTGAGGACGACGAGACGGAGGATAAGCCCGAGTACACTCTTGATGTCAGTTTGCGTCGCCGGACCTTGTCATCTTCATAG
Protein Sequence: MGDKSQKFCLKWTNYQHHLSESFISLLQTESMADVTLSAQGKRIHAHRIVLSVCSPLFQAVGPMFDMPAGSCSPCLSTGAFVQLPGPTAFLHCTLTSLSVHRSSCPTARTYNLSSLYSNLLVCPQELLSFCPTARTPHPVIIFSEMNFNDICSIVEFVYRGELSIGGDRMTSVLKVAEELKIRGLMWVLEEVELTPEGNLVDHNTCAEEHLHEQMGAPTANGAIQGKTTRTDGTKRLAKKGGGKVLDEDRKRRRRRDSIKKEYSEESIAQALEDLKSGRTLVETAIAHNVPRSTLYVRARTQHVSLAYTRQEHSGEIIKAAVQAVVDGASLQKASEKHKIPKTVLWRRVQKELGRYGISHRRGAGTRTPSRSEKRLAAIEALEQGDTLTTVSKQFQIPKTTLFREKTRLVEAGRLPWSCLRKRDPEYDGKHQRRLKDAVTACMEGKMSQATASMTYQVPKTTIWRRLHKGSVKGSQESPEGEEVDDPESKPTEDDETEDKPEYTLDVSLRRRTLSSS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01446404; iTF_01446728; iTF_01447695; iTF_01447413; iTF_01450389; iTF_01450715; iTF_01448703;
90% Identity: iTF_01448703;
80% Identity: iTF_01448703;