Basic Information

Insect: Timema podura
Gene Symbol: -
Assembly: GCA_033556935.1
Location: JAVRXN010000002.1:13431430-13447814[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.65 1.3e+02 5.1 1.0 1 23 60 83 60 83 0.94

2 17 0.026 4.9 9.6 3.5 1 23 90 113 90 113 0.97

3 17 0.33 64 6.1 0.1 1 23 414 437 414 437 0.96

4 17 0.033 6.4 9.2 0.4 2 23 471 492 470 492 0.97

5 17 8.8 1.7e+03 1.6 2.8 1 23 498 520 498 521 0.94

6 17 0.34 65 6.0 3.8 2 21 842 861 841 862 0.94

7 17 0.014 2.8 10.4 0.1 2 23 1246 1267 1246 1267 0.95

8 17 0.051 9.9 8.6 1.2 1 23 1275 1297 1275 1297 0.98

9 17 0.04 7.8 9.0 1.5 1 23 1326 1348 1326 1348 0.96

10 17 0.018 3.6 10.0 4.4 1 23 1355 1377 1355 1377 0.99

11 17 0.12 24 7.4 2.3 1 23 1477 1499 1477 1499 0.96

12 17 0.85 1.6e+02 4.8 0.3 1 23 1583 1605 1583 1605 0.96

13 17 0.45 87 5.6 5.5 1 23 1611 1633 1611 1633 0.98

14 17 0.0078 1.5 11.2 2.6 1 23 1792 1814 1792 1814 0.97

15 17 9.8e-05 0.019 17.2 2.1 1 23 1820 1842 1820 1842 0.99

16 17 0.0012 0.23 13.8 0.2 1 23 1907 1929 1907 1929 0.98

17 17 0.084 16 7.9 5.6 1 23 1939 1961 1939 1961 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.65	1.3e+02	5.1	1.0	1	23	60	83	60	83	0.94
2	17	0.026	4.9	9.6	3.5	1	23	90	113	90	113	0.97
3	17	0.33	64	6.1	0.1	1	23	414	437	414	437	0.96
4	17	0.033	6.4	9.2	0.4	2	23	471	492	470	492	0.97
5	17	8.8	1.7e+03	1.6	2.8	1	23	498	520	498	521	0.94
6	17	0.34	65	6.0	3.8	2	21	842	861	841	862	0.94
7	17	0.014	2.8	10.4	0.1	2	23	1246	1267	1246	1267	0.95
8	17	0.051	9.9	8.6	1.2	1	23	1275	1297	1275	1297	0.98
9	17	0.04	7.8	9.0	1.5	1	23	1326	1348	1326	1348	0.96
10	17	0.018	3.6	10.0	4.4	1	23	1355	1377	1355	1377	0.99
11	17	0.12	24	7.4	2.3	1	23	1477	1499	1477	1499	0.96
12	17	0.85	1.6e+02	4.8	0.3	1	23	1583	1605	1583	1605	0.96
13	17	0.45	87	5.6	5.5	1	23	1611	1633	1611	1633	0.98
14	17	0.0078	1.5	11.2	2.6	1	23	1792	1814	1792	1814	0.97
15	17	9.8e-05	0.019	17.2	2.1	1	23	1820	1842	1820	1842	0.99
16	17	0.0012	0.23	13.8	0.2	1	23	1907	1929	1907	1929	0.98
17	17	0.084	16	7.9	5.6	1	23	1939	1961	1939	1961	0.97

Sequence Information

Coding Sequence: ATGTCCTCACCATCCATGGTGCACCGTGGTGCAGGAGACACGTTGGTGGTCCGCAGCGTGGTGAGTGGGACTGCTCTCTACCAACAGTCAGGAGACGAGCTGGTCCCAAGCACAAAGAATCCAGTGGCCGAGGCCGACTCTGACCCTGACTTGCCTCAGTGCAAGATCAAGCGCAACTATTCATGTCCTCAGTGTGACTATTACTCCCAGAACCCACGCTCCTACCTGTACCATCTGAAGGACACCCACAGACAGAAGATCCGAGTATACGAATGCCCCAAGTGTCTGTACGCGTCCAAACACAGTCAGAAGCTGCAGAGACATCTCCACATGGTTCACACCATGGCCCGTGTCAGGTTCAAGAAACGAAGGACCCGGCCCCTCGCCCCGGCACTAACAACTCACAGCCAGTTGAAGACATCAGAAGGGTGGATGTTCCTCATCTCGGACATCAGGAGGGTGGATGTTCCTTATCTCAGACATCAGGAGGGTGGACGTTCCTTTGCACGGACATCAGTAAGGTGGATGTTCCTCATCTCAGACATCAGGAGGGTGGATGTTTCTTATCTCAGACATCAGGAGAATGGATGCTATTTATCTCAGACATTAGGAGGGTGTTTGTTCCTTATCTCAGACATGAGGAGGGTGGATGCTATTTATCACAGACATCAGGAGGGTGGACGTTTCTCATCTCAGACATTAGGAGGGTGGACGTTCCTTCTCTCTGACATCAAGAGGGTGGACGTTCCTTCTCTCAGACATCAAGAGGGTGGAGGTTCCTTCTCTCAGACATCAGGAGGGTGTGTGTCATTTATCTCATACATCAGGAGGGTGGATGTTATTTATCTCAGACATCAGGAGGGTGGACGCTCCTTCGCTCAGACATCAGTAGGGTGGATGCTATTTATCTCAGACATTAGGAGGGTGGACGTTCCTATCTCAGACATCAGGAGGACATCAGGAGGGTGGACGTTCTTATCTCAGACATCAGGAGGGTGGACGTTCTTATCTCAGACATCAGGAGGGTGGATGTTCTTATCTCAAACATCAGAAGGGTGGATGTTCCTACCTCAGACATCAGAAGGGTGGATGTTCCTACCTCAGACATCAGAAGGGTGGATGTTCCTATCTCAGACATCAGAAGGGTGGATGTTCCAGGTGAAGCTGGAGCCCATGGATACGAAAGAGAGTTGTAGCGAGGAAGATCCAAAGCCTATAAAGGGGGTCATTGTTGGAGAGTACCCCTGCTCTGCCTGCGGGTTCTCTAGTCGCAGCCGCGCTCTCACAGCCCGCCACGAGCGCGTGGCACACCTCAAGAAGAAGTTCTATCGTTGTGTGAAGTGCAGCTATGTGACACACATGAAGGCGCGCTATACCAAGCACGTCAAGTACCACTCCATGCCCATGATCAAGTGCGAGCTGTGTGACTTCCGCACTCCTTACAAATGGAACCTGGACCGTCATGGCCGCAACCACCAGGGGGGCGGAGCCTACCACTGCTCTCTCTGCAACTTCACCGCCGACATCAAGCAGAGTCTGACGGTGCACGAGATGAACCACCACGTGCCTCCAGTTGGTGGTGCACTAGCGCAGCAGGGCAGGAGGAGGAACAAGGTCGGCGCCAGCGACTCTGCCCCCCAAGCCGAGGAGGGGATCGACCAGGCTGAGCTGGAACTGCTGAGGATGGAGCGGGAGGACACGCAGTTTACCCCTGTAGTGACCCCCAGTGCACCCAATGCCATCACCACAACAACCCGCAACAACATGCGTTCATCCTCCGCGGCGGGCATTGCTCGTCGTTTGTCACGCTCCTCGCCCAAAGCCACGACGACGCTCCAGGAGATGAACGAACGTCACAACTTCCACACTGACTTTATCCATCCGGATGACATTGTGGAACATCGGAACGGATCTGTTTACATAAAGCACCTGAGGTGCCGGGCCTGTAACTACAAGGCGGCCTTTGAGTGGGAGATAGCTCGGCACGAGGGCCGGGTACACGGGATGGTCCGCGAGGTGCCGCCAGGGGGCCAAAAAACATCCGGTAAAAAGGTCCCTCGGCCTATCCCCAACCTCATCCGCATACAAAGCAAAGTGACCCCAGCCCCATCTTCCACATCGTCTCCCTTGCCCATATTGCGCATACCCACCGTGAGGGGCAGAGTCCCGGCTGCATCGCTGCTCAAGCCGCGAGAGCCCCAGATGAGTGATAAGGACCTGAATGATATCTGTGCCAAGTCTTGCCCAAACAGTTTTTTGAAAGACTTTGCTTCATTGATCGGCGACGAAGACGCCTTTAAAACTTCGGACCCAGACAAGTCTGTGGGTAAGACCAGTCCCCCGGTGGCATTCAAGCGCAAGAATGCGTCGTTCTTCGACCAGTTGAAGGAGAAGCTGGGCGCTGCTGATAACTTGGTGTGCACTTGGTGTGGCCACGAGAGCAAGTGTTTGTCCGAGTTGGCCGCGAGGGGGGAGAGCTCGACCAGCAGTCTTGCCGTCGGTGCAGCCGAACTGTCTTCTACCAGATGTCAGCACTGTCGTCACCGGTGCAAGACCAGCGCTGACCTGGTGGTGCACCTGCAGTCGTGCGAGGAAGCCAAGAGGAACCACGAACCGAGCGCTACCGAGGACCAGAAGGACCAGGATGAGGAGAAGCTGGAGGAGGACGATGAGCTTCCTATTGAGAATAAGGTGTTTGTGTGGAATGAACTGCCCCAGCCTGAGGAGTCCAGACCGCTCCCCGAGGATGAGAGCGAGTCTCCTCCAGACAGTGTAGCAGGAGTGGAGACTACTCCAGACTTCCAGCCGGCCGTTGCCGCAGTCAAGAAGGCAGTTATGTTGCCCGACGTCGGACCATCTCAAAACTACATCTTCGGGTCATCAGTAGCACTTGTACTTAGAGGGCATCCGTCGAGCCCATGGTCCCAAGATAAAGTTCTGTACGGGTCACGCGCAATGTCGGTGTTCAAGTGCCCACACTGCTCCTTTTGGGCATCCACCGCATCCCGCTTCCACGTACACATTGTGGGCCACCTCAACAAGAAGCCGTTCGAATGCTCGCTGTGCGCATACCGCTCCAACTGGCGCTGGGACATCACCAAGCACATCAGACTCAAGTCTGCGAGGGATGTAGGACACGAACGGGCGCGTGTGCTGATGACAGACGAGACCGGTCGCCGTAACTATTCCAAGTACAACAAGTACCTCACACTGATGAGGGTTCATGAGGCCACGGCAGAGAGTAGCGGGACCGGACGAAGGTCCCGAGGCGTGGCGGAGGGAAGTCAGGGGCAAGCCGAGACACCCCTGCTGAGACCACCGCCCAGCCTGTTGCCAGCGCAAGAGGATCCCGAAGGGAGGAAAGACCTGTTTCCTGAGGGCGGGGAGGAAAACCCGTCAGACAAGAGAAATAGCACCGAGGGCAGAAAGACACTCTGGAAGTGCAAGAAGTGTAACTACAGGGATGCAAGTCGTGAGCTGGTGTTGGCGCACGTCAAGGAACACTATCAGCAACGCTCGCTGGCAGCAATCAGCATTAGCGGTGACGAGGCAAGTGTCGGCGGGCGAGACCAGCCACCATTCCGGTGTGGTCATTGCCTGCAGGTATCAAACTGGAAGCATGTGATTCAGCGGCATTGTCGTCTCAAACACAGCGGGGACATAAAGGTGCTCATAGGACAGCCGGAGGAAGAATACACAACTCCATCTCCTCAGCCAGAAACTAGAGAGCCTGAAACTTGCAGCAAGTGTCCATATGTTGCGTCCAGTGCTAGTGACCTGAACGATCACTTGGATCAGCACCAGTCCCGTCCAGGAGCCATATTCAAGTGCTACTACTGTCCTTTCTATGTCAACGAGAAAAGGGAGCTGTTGCAACACATGAACCTCCATGGGGTCAAGGAGTCAGAGGAACCGGTGCAGGAGAAAGAGTCAGTGCGGCAGTACCACAACGTGGATGTTAGCCCGGGTAAACGCTACAAATGTGCAGGCTGTCCATATGTAAGCAACAGCAAGTCCCAGTTCCTCTATCACAAGCAGTTTCACCGTCCCCGTGGGGCCCCCTTCAAGTGTGGCCTGTGTTCCTACAATGTGAGTCGACGGCACCTTCTGCACCAGCATCTGCGTGTGCATGGTATACTGGTCCCCCCGCAGAAAACTAGCCCGGTCAAGACCGACCAAACTCATCATGACCACATAGAGGAGGTATCACCCCTCTGCCGCGCTCCGCATGCTGCAGTAGATACGCGCGACATGGCTGACGTGCCACTAGTCTGGGTCTCCCGCGGCGACAAGTTCTTCAAGATGTTCAAATGCCGGTACTGCCCGCACGTGAACCTGCGCAAGGTGAACATCCAGGAACATGAGAAGATGCACCGGGCCCGAGGGGGTCTCGAGCAAGACGAGTCCGTGGCTTCACCCCAGCAACAGCACCATTGTCCCGACTGCAACTACATCTGCAACAATGCCGGCGTGCTATCCTCCCATGCCAAGGTCCACCAGGGTGTGTACGGCCACGTACACTGTCTCGTTGACTCGTCCAAACCCGACTCTGACCAGGACGGAGATGTCTTAAGCGCGCACGACGAACAGATACAAAGTTACGATGAGGACGAGGATGATGAACAGAATATGTTCCGACCTATCCTGAACACGAACCAAAGTGACGAACAAAAGGAGTTCCTTGCCGAGATGCAACTGACCGCCAACGACTCAGGACAGCTGCAAAAGGAACAGCAGAGACTGCTGTTCTTTTGCCCGCTATGCCCAGCGAGGTTTCTTTTTGAGAAGGAGTTGGCTATCCACAGGCGGTTCCATGAGATTCGTTTAGCGCATCGGTGCGAGTCCTGCTCGTACGCTGCCCGCCAGCGGCATCACCTTCTATCACATCTTAAGGTACACTCGGAGGAGTACCAGCAGCGCACAGTCACACTCTCCGCCATGTACCCCACCTCACCGGACCACCCTCAACCTAACACAGCCGTTGTGATGGAAGGTACTGGAGTAGCCGGGCCCCTCTGGATCGTCATCGCCGGCCGGACGACCACTACTCTCCCGGAGTCCACAAAGCCCGCCCCTGTGAAACAATACCCTGTTACATGTGCCCCGCCAAGTTCTTCAAGAGTGTGGCACTGGACTACCATCTATCTCTGCACGGGGGTGACGGGCCGCACAAATGTAGGCGCTCAGAGTGTTCCACTGTCTGGGACGGACCTGTTTGAGCGTAAGGAGGCCCAGAAGCAAAGCTTGGCCAGCGGGGTCCCAGTTTATCAGCCACCTCTTCACGTGGACCCTCAGTTTGGCATATTGATGCACGGGAACCCCGAGTACATCTACCCCACATACCTGAAAAATGGCCGCCTAAAGGAGAAACGATACAAGTGTCATAAGTGTCCAAGTGCTTTTGAGAAGCGTGAACAATATAAGGTGCACTTGTCTCTGCATGGCTCCAAGCAGCGCTACAAGTGTGAAAAGTGCGACTACTCTGTTAAGTACTACGCCAACTACATCCAGCACATGAGGAAACATCAGAATAATGAGGAGGCCCAGGCGGCCAAGAAGGTTAAGGAGGGTGTGCCGTCTGAGCCAGGAGTATTGGCCCCTCTGGAGGAGGTCGGGATGGGGACTACAGAGGAGCCCATGGTTACCACGTCTCCACCCTTTCAGCCACGCCCTTTTCGGCGCCAAGCTGGTCCCCCGGAGGATGAGAACCGTAGGGCGTTCCCCTGCCTGTACTGCCCCTACTCAAGTCCAAGAAAGGATGGGCTGGACAGCCACATTCGAAGGCACTTGGCGGTGTCTGGGACGCTCTCAGCTCATTCGTGCTCTCACTGCGACTACACGGCTACACAACTGCACTTCTTGCGAGACCACGTGAGGGTACACTTTGACCTGTCCCGGCGGCCCCGACCCGAGGCATACATGAAGTGTGAGCGGCTGGAACTAACAGCTTACTCTGAGGGAAATGGGACCGAACCTCCAGACAAGGTGTTGCTATTTCGTGATTGCGGAGAGCCCCTGTCTCATGACGAGAGGTTTGAACCAATCTACTCACCGGGACCAATAGAGAGTGGCGATGACACCACAAAGGTCTTCATTGACATCTCAACCGGTCTCTCCAAGGTGACATCGGAAACTACGGAAGCGGATCCCACAGTCGAGGTCGTCCAGGATGTGAAACTGGAAGATGACGAAGAGGAAGTGTCAGTCAGAGCAGATAAGAGCTCTGATGCGGTTCTTGTTGTGTCTGACGATGCAGTCAAGTCCGAGAAGGAATCTGATTCGAGCAATTCAACTTCAAGCTCTTACTCGTCTGGCTCATCTTCTTCCAGTTCGTCATCTTCTAACAACACCAAGTCGAGCTCCACGAGTGATTCTGAGTCTCAAACTGGCGATGACAAGAGATCTAGGAGTAAGGAGTGCGAGTTGTTGGACAATGTCAGCGAGGAGAAGACACGCACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGCTAGACAATGTCTGTGAGGTGAAGACGCGCACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGTTGGACAATGTTAGCGAGTCAGGGACAGTGAACTCAAGATCAAATTGA
Protein Sequence: MSSPSMVHRGAGDTLVVRSVVSGTALYQQSGDELVPSTKNPVAEADSDPDLPQCKIKRNYSCPQCDYYSQNPRSYLYHLKDTHRQKIRVYECPKCLYASKHSQKLQRHLHMVHTMARVRFKKRRTRPLAPALTTHSQLKTSEGWMFLISDIRRVDVPYLRHQEGGRSFARTSVRWMFLISDIRRVDVSYLRHQENGCYLSQTLGGCLFLISDMRRVDAIYHRHQEGGRFSSQTLGGWTFLLSDIKRVDVPSLRHQEGGGSFSQTSGGCVSFISYIRRVDVIYLRHQEGGRSFAQTSVGWMLFISDIRRVDVPISDIRRTSGGWTFLSQTSGGWTFLSQTSGGWMFLSQTSEGWMFLPQTSEGWMFLPQTSEGWMFLSQTSEGWMFQVKLEPMDTKESCSEEDPKPIKGVIVGEYPCSACGFSSRSRALTARHERVAHLKKKFYRCVKCSYVTHMKARYTKHVKYHSMPMIKCELCDFRTPYKWNLDRHGRNHQGGGAYHCSLCNFTADIKQSLTVHEMNHHVPPVGGALAQQGRRRNKVGASDSAPQAEEGIDQAELELLRMEREDTQFTPVVTPSAPNAITTTTRNNMRSSSAAGIARRLSRSSPKATTTLQEMNERHNFHTDFIHPDDIVEHRNGSVYIKHLRCRACNYKAAFEWEIARHEGRVHGMVREVPPGGQKTSGKKVPRPIPNLIRIQSKVTPAPSSTSSPLPILRIPTVRGRVPAASLLKPREPQMSDKDLNDICAKSCPNSFLKDFASLIGDEDAFKTSDPDKSVGKTSPPVAFKRKNASFFDQLKEKLGAADNLVCTWCGHESKCLSELAARGESSTSSLAVGAAELSSTRCQHCRHRCKTSADLVVHLQSCEEAKRNHEPSATEDQKDQDEEKLEEDDELPIENKVFVWNELPQPEESRPLPEDESESPPDSVAGVETTPDFQPAVAAVKKAVMLPDVGPSQNYIFGSSVALVLRGHPSSPWSQDKVLYGSRAMSVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSARDVGHERARVLMTDETGRRNYSKYNKYLTLMRVHEATAESSGTGRRSRGVAEGSQGQAETPLLRPPPSLLPAQEDPEGRKDLFPEGGEENPSDKRNSTEGRKTLWKCKKCNYRDASRELVLAHVKEHYQQRSLAAISISGDEASVGGRDQPPFRCGHCLQVSNWKHVIQRHCRLKHSGDIKVLIGQPEEEYTTPSPQPETREPETCSKCPYVASSASDLNDHLDQHQSRPGAIFKCYYCPFYVNEKRELLQHMNLHGVKESEEPVQEKESVRQYHNVDVSPGKRYKCAGCPYVSNSKSQFLYHKQFHRPRGAPFKCGLCSYNVSRRHLLHQHLRVHGILVPPQKTSPVKTDQTHHDHIEEVSPLCRAPHAAVDTRDMADVPLVWVSRGDKFFKMFKCRYCPHVNLRKVNIQEHEKMHRARGGLEQDESVASPQQQHHCPDCNYICNNAGVLSSHAKVHQGVYGHVHCLVDSSKPDSDQDGDVLSAHDEQIQSYDEDEDDEQNMFRPILNTNQSDEQKEFLAEMQLTANDSGQLQKEQQRLLFFCPLCPARFLFEKELAIHRRFHEIRLAHRCESCSYAARQRHHLLSHLKVHSEEYQQRTVTLSAMYPTSPDHPQPNTAVVMEGTGVAGPLWIVIAGRTTTTLPESTKPAPVKQYPVTCAPPSSSRVWHWTTIYLCTGVTGRTNVGAQSVPLSGTDLFERKEAQKQSLASGVPVYQPPLHVDPQFGILMHGNPEYIYPTYLKNGRLKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCEKCDYSVKYYANYIQHMRKHQNNEEAQAAKKVKEGVPSEPGVLAPLEEVGMGTTEEPMVTTSPPFQPRPFRRQAGPPEDENRRAFPCLYCPYSSPRKDGLDSHIRRHLAVSGTLSAHSCSHCDYTATQLHFLRDHVRVHFDLSRRPRPEAYMKCERLELTAYSEGNGTEPPDKVLLFRDCGEPLSHDERFEPIYSPGPIESGDDTTKVFIDISTGLSKVTSETTEADPTVEVVQDVKLEDDEEEVSVRADKSSDAVLVVSDDAVKSEKESDSSNSTSSSYSSGSSSSSSSSSNNTKSSSTSDSESQTGDDKRSRSKECELLDNVSEEKTRTLSEDEDSCEEESKVLDNVCEVKTRTLSEDEDSCEEESKVLDNVSESGTVNSRSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01445258; iTF_01448007;
90% Identity: -
80% Identity: -