Basic Information

Insect: Timema genevievae
Gene Symbol: -
Assembly: GCA_902155825.1
Location: CABFWO010000796.1:2433-16520[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.74 1.4e+02 5.2 1.0 1 23 60 83 60 83 0.94

2 20 0.029 5.4 9.6 3.5 1 23 90 113 90 113 0.97

3 20 0.37 70 6.1 0.1 1 23 284 307 284 307 0.96

4 20 0.037 7 9.3 0.4 2 23 341 362 340 362 0.97

5 20 10 1.9e+03 1.6 2.8 1 23 368 390 368 391 0.94

6 20 1.2 2.3e+02 4.5 2.3 2 23 664 685 663 685 0.96

7 20 0.38 71 6.1 3.8 2 21 710 729 709 730 0.94

8 20 0.012 2.2 10.9 0.1 2 23 1075 1096 1075 1096 0.96

9 20 0.026 4.8 9.8 1.2 1 23 1104 1126 1104 1126 0.98

10 20 0.045 8.5 9.0 1.5 1 23 1156 1178 1156 1178 0.96

11 20 0.021 3.9 10.1 4.4 1 23 1185 1207 1185 1207 0.99

12 20 0.14 26 7.5 2.3 1 23 1307 1329 1307 1329 0.96

13 20 0.96 1.8e+02 4.8 0.3 1 23 1423 1445 1423 1445 0.96

14 20 0.31 58 6.4 5.2 1 23 1451 1473 1451 1473 0.98

15 20 0.59 1.1e+02 5.5 0.2 1 23 1536 1558 1536 1558 0.96

16 20 0.011 2 11.0 1.1 1 23 1564 1586 1564 1586 0.97

17 20 0.0089 1.7 11.2 2.6 1 23 1669 1691 1669 1691 0.97

18 20 0.00011 0.021 17.2 2.1 1 23 1697 1719 1697 1719 0.99

19 20 0.0013 0.25 13.8 0.2 1 23 1813 1835 1813 1835 0.98

20 20 0.095 18 8.0 5.6 1 23 1845 1867 1845 1867 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.74	1.4e+02	5.2	1.0	1	23	60	83	60	83	0.94
2	20	0.029	5.4	9.6	3.5	1	23	90	113	90	113	0.97
3	20	0.37	70	6.1	0.1	1	23	284	307	284	307	0.96
4	20	0.037	7	9.3	0.4	2	23	341	362	340	362	0.97
5	20	10	1.9e+03	1.6	2.8	1	23	368	390	368	391	0.94
6	20	1.2	2.3e+02	4.5	2.3	2	23	664	685	663	685	0.96
7	20	0.38	71	6.1	3.8	2	21	710	729	709	730	0.94
8	20	0.012	2.2	10.9	0.1	2	23	1075	1096	1075	1096	0.96
9	20	0.026	4.8	9.8	1.2	1	23	1104	1126	1104	1126	0.98
10	20	0.045	8.5	9.0	1.5	1	23	1156	1178	1156	1178	0.96
11	20	0.021	3.9	10.1	4.4	1	23	1185	1207	1185	1207	0.99
12	20	0.14	26	7.5	2.3	1	23	1307	1329	1307	1329	0.96
13	20	0.96	1.8e+02	4.8	0.3	1	23	1423	1445	1423	1445	0.96
14	20	0.31	58	6.4	5.2	1	23	1451	1473	1451	1473	0.98
15	20	0.59	1.1e+02	5.5	0.2	1	23	1536	1558	1536	1558	0.96
16	20	0.011	2	11.0	1.1	1	23	1564	1586	1564	1586	0.97
17	20	0.0089	1.7	11.2	2.6	1	23	1669	1691	1669	1691	0.97
18	20	0.00011	0.021	17.2	2.1	1	23	1697	1719	1697	1719	0.99
19	20	0.0013	0.25	13.8	0.2	1	23	1813	1835	1813	1835	0.98
20	20	0.095	18	8.0	5.6	1	23	1845	1867	1845	1867	0.97

Sequence Information

Coding Sequence: ATGTCCTCACCATCCATGGTGCACCGTGGTGCAGGAGACACGTTGGTGGTCCGCAGCGTGGTGAGTGGGACTGCTCTCTACCAACAGTCAGGAGACGAGCTGGTCCCAAGCACAAAGAACCCAGTGGCCGAGGCCGACTCTGACCCTGACTTGCCTCAGTGCAAGATCAAGCGCAACTATTCGTGTCCTCAGTGTGACTATTACTCCCAGAACCCACGCTCCTACCTATACCATCTGAAGGACACCCACAGACAGAAGATCCGAGTATACGAATGCCCCAAGTGTCTGTACGCGTCCAAACACAGTCAGAAGCTGCAGAGACATCTCCACATGGTTCACACCATGGCCCGTGTCAGGTTCAAGAAACGAAGGACCCGGCCCCTCGCCCCGGCACTAACAACTCACAGCCAGTTGAAGACATTAGGAGGGTGGACGTTCCTTCTCTCTGACATCAAGAGGGTGGACGTTCCTTCTCTCAGACATCAAGAGGGTGGAGGTTCCTTCTCTCAGACATCAAGAGGGTGGAGGTTCCTTCTCTCAGACATCAGGAGGACATCAGTAAGATGGATGTTCCTCATCTCAGACATCAGGAGGGTGGACGTTCTTATCTCAGACATCAGGAGGGTGGATGTTCTTATCTCAAACATCAGAAGGGTGGATGTTCCTACCTCAGACATCAGAAGGGTGGATGTTCCTATCTCAGACATCAGGAGGACATCAGAAGGGTGGATGTTCCTATCTCAGACATCAGGAGGCTGGATGTTCCAGGTGAAGCTGGAGCCCATGGATACGAAAGAGAGTTGTAGCGAGGAAGATCCAAAGCCTATAAAGGGGGTCATTGTTGGAGAGTACCCCTGCTCTGCCTGCGGGTTCTCTAGTCGCAGCCGCGCTCTCACAGCCCGCCACGAGCGCGTGGCACACCTCAAGAAGAAGTTCTATCGTTGTGTGAAGTGCAGCTATGTGACACACATGAAGGCGCGCTATACCAAGCACGTCAAGTACCACTCCATGCCCATGATCAAGTGCGAGCTGTGTGACTTCCGCACTCCTTACAAATGGAACCTGGACCGTCATGGCCGCAACCACCAGGGGGGCGGAGCCTACCACTGCTCTCTCTGCAACTTCACCGCCGACATCAAGCAGAGTCTGACGGTGCATGAGATGAACCACCACGTGCCTCCAGTTGGTGGTGCACTAGCGCAGCAGGGCAGGAGGAGGAACAAGGTCGGCGCCAGCGACTCTGCCCCCCAAGCCGAGGAGGGGATCGACCAGGCTGAGCTGGAACTGCTGAGGATGGAGCGGGAGGACACGCAGtTTACCCCTGTAGTGACCCCCAGCGCACCCAATGCCATCACCACAACAACCCGCAACAACATGCGTTCATCCTCCGCGGCGGGTATTGCTCGTCGTTTGTCACGCTCCTCGCCCAAAGCCACGACGACGCTCCAGGAGATGAACGAACGTCACAACTTCCACACTGACTTTATCCATCCGGATGACATTGTGGAACATCGGAACGGATCTGTTTACATAAAGCACCTGAGGTGCCGGGCCTGCAACTACAAGGCGGCCTTTGAGTGGGAGATAGCTCGGCATGAGGGCCGGGTCCACGGGATGGTCCGCGAGGTGCCGCCAGGGGGCCAAAAAACATCCGGTAAAAAGGTCCCTCGGCCTATCCCCAACCTCATCCGCATACAAAGCAAAGTGACCCCAGCCCCATCTTCCACATCGTCTCCCTTGCCCATATTGCGCATACCCACCCCGCGAGAGCCCCAGATGAGTGATAAGGACCTGAATGATATCTGTGCCAAGTCTTGCCCAAACAGTTTTTTGAAAGACTTTGCTTCATTGATCGGCGACGAAGACGCCTTTAAAACTTCGGACCCAGACAAGTCTGTGGGTAAGACCAGTCCCCCGGTGGCATTCAAGCGCAAGAATGCGTCGTTCTTCGACCAGTTGAAGGAGAAGCTGGGCGCTGCTGATAACTTGGTGTGCACTTGGTGTGGCCACGAGAGCAAGTGTTTGTCCGAGTTGGTGAGACACCAGAAACTACATACGGGCAAGGCCGCGAGGGGGGAGAGTTCGACCAGCAGTCTTGCCGTCGGTGCAGCCGAACTGTCTTCTACCAGATGTCAGCACTGTCGTCACCGGTGCAAGACCAGCGCTGACCTGGTGGTGCACCTGCAGTCGTGCGAGGAAGCCAAGAGGAACCACGAACCGAGCGCTACCGAGGACCAGAAGGACCAGGATGAGGAGAAGCTGGAGGAGGACGATGAGCTTCCTATTGAGAATAAGGTGTTTGTGTGGAATGAACTGCCCCAGCCTGAGGAGTCCAGACCGCTTCCCGAGGATGAGAGCGAGTCTCCTCCAGACAGTGTAGCAGGAGTGGAGACTACGCCAGACTTCCAGCCGGCCGTTGCCGCAGTCAAGAAGGTGAGAGACAATCAGGTGTTCAAGTGCCCACACTGCTCCTTTTGGGCATCCACCGCATCCCGCTTCCACGTACACATTGTGGGCCACCTCAACAAGAAGCCGTTCGAATGCTCACTGTGCGCATACCGCTCCAACTGGCGCTGGGACATCACCAAGCACATCAGACTCAAGTCTGCGAGGGATGTAGGACACGAACGGGCGCGTGTGCTGATGACAGACGAGACCGGTCGCCGTAACTATTCCAAGTACAACAAGTACCTCACACTGATGAGGGTTCATGAGGCCACGGCAGAGAGTAGCGGGACCGGACGAAGGTCCCGAGGCGTGGCGGAGGGAAGTCAGGGGCAAGCCGAGACACCCCTGCTGAGACCACCGCCCAGCCTGTTGCCAGCGCAAGAGGATCCCGAAGGGAGGAAAGACCTGTTTCCTGAGGGCGGGGAGGAAAACCCGTCAGACAAGAGAACTAGCACCGAGGGCAGAAAGACACTCTGGAAGTGCAAGAAGTGTAACTACAGGGATGCAAGTCGTGAGCTGGTGTTGGCGCACGTCAAGGAACACTATCAGCAACGCTCGCTGGCAGCAATCAGCATTAGCGGTGACGAGGCAAGTGTCGGCGGGCGAGACCAGCCACCATTCCGGTGTGGTCATTGCCTGCAGGTATCAAACTGGAAGCATGTGATTCAGCGGCATTGTCGTCTCAAACACAGCGGGGACATAAAGGTGCTCATAGGACAGCCGGAGGAAGAATACACAACTCCATCTCCTCAGCCAGAAACTAGAGAGCCTGAAACTTGCAGCAAGTGTCCATATGTTGCGTCCAGTGCTAGTGACCTGAACGATCACTTGGAGCAGCACCAGTCCCGTCCAGGAGCCATATTCAAGTGCTACTACTGTCCTTTCTATGTCAGCGAGAAAAGGGAGCTGTTGCAACACATGAACCTCCATGGGGTCAAGGAGTCGGAGGAACCGTCGGTGCAGGAGAAAGAGTCTGTGCGGCAGTACCACAACGTGGATGTTAGCCCGGGTAAACGCTACAAATGTGCAGGCTGTCCATATGTGAGCAACAGCAAGTCCCAGTTCCTCTATCACAAGCAGTTTCACCGTCCCCGTGGGGCCCCCTTCAAGTGTGGCCTGTGTTCCTACAACGTGAGTCGACGACACCTTCTGCACCAGCATCTGCGTGTGCATGGTATACTGGTCCCCCCGCAGAAAACTAGCCCTGTCAAGACCGACCAAACTCACCATGACCACATAGAGGAGGTATCACCCCTCTGCCGCGCTCCGCATGCTGCAGTAGATACGCGCGACATGGCTGATGTGCCACTAGTCTGGGTCTCCCGCGGCGACAAGTTCTTCAAGATGTTCAAATGCCGGTACTGCCCGCACGTGAACCTGCGCAAGGTGAACATCCAGGAACATGAGAAGATGCACCGGGCCCGAGGGGGTCTCGAGCAAGACGAGTCCGTGGCTTCACCCCAGCAACAGCACCATTGTCCCGACTGCAACTACATCTGCAACAATGCCGGCGTGCTATCCTCCCATGCCAAGGTCCACCAGGGTGTGTACGGCCACGTACACTGTCTCGTTGACTCGTCCAAACCCGACTCTGACCAGGTAACGAAATTGCGGCAATACCTCTACGAGGACGGAGATGTCTTAAGCGCGCAAGACGAACAGATACAAAGTTACGATGAGGACGAGGATGATGAACAGAATATGTTCCGGCCTATCCTGAACACGAACCAAAGTGATGAACAAAAGGAGTTCCTTGCCGAGATGCAACTGACCGCCAACGACTCAGGACAGCTGCAAGAGGAACAGCAGAGACTGCTGTTCTTTTGCCCGCTATGCCCAGCGAGGTTTCTTTTTGAGAAGGAGTTGGCTATCCACAGGCGGTTCCATGAGATTCGTTTAGCGCATCAGTGCGAGTCCTGCTCGTACGCTGCCCGCCAGCGGCATCACCTTCTATCACATCTTAAGGTACACTCGGAGGAGTACCAGCAGCGCACAGTCACACTCTCCGCCATGTACCCCACCTCACCGGACCACCCTCAACCTAACACAGCCGTTGTGATGGAAGGTACTGGAGTAGCTGGGCCCCTCTGGATCGTCATTGCCGGCCGGACGACCACTACTCTCCCGGAGTCCACAAAGCCCGCCCCTGTGAAACAATACCCGTGTTACATGTGCCCCGCCAAGTTCTTCAAGAGTGTGGCACTGGACTACCATCTATCTCTGCATGGGGGTGACGGGCCGCACAAATGTAGGCGCTGTAACTATGCTGTCAAAACTCTGGGGAATCTGGCCAAGCATGAGATGGTTCACAATACGACCGAGGGGCCCCAAGAGGTGTCTCGTCTCTCTCCTGCCGTCAATGTCCAGCAGAGTGTTCCACTGTCTGGGACGGACCTGTTTGAGCGTAAGGAGGCCCAGAAGCAAAGCTTGGCCAGCGGGGTCCCAGTTTATCAGCCACCTCTTCATGTGGACCCTCAGTTTGGCATATTGATGCACGGGAACCCCGAGTACATCTACCCCACATACCTGAAAAATGGCCGCCTAAAGGAGAAACGATACAAGTGTCATAAGTGTCCAAGTGCTTTTGAGAAGCGTGAACAATATAAGGTGCACTTGTCTCTGCATGGCTCCAAGCAGCGCTACAAGTGTGAAAAGTGCGACTACTCTGTTAAGTACTACGCCAACTACATCCAGCACATGAGGAAACATCAGAATAATGAGGAGGCCCAGGCGGCCAAGAAGGTTAAGGAGGGTGTGCCGTCTGAGCCAGGAGTATTGGCCCCTCTGGAGGAGGTCGGGATGGGGACGACAGAGGAGCCCATGGTTACCACGTCTCCACCCTTTCAGCCACGCCCTGTTAAGTCGATCGGGTGGTCAGCTTCGTCTAATGGGGGACCCCAGGCGCAGAGCGCAACGGAACGTCAGGTAGCATTACTCCAGCAGTTTCGGCGCCAAGCTGGTCCTCCGGAGGATGAGAACCGTAGGGCGTTCCCCTGCCTGTACTGCCCCTACTCAAGTCCAAGAAAGGATGGTCTGGACAGCCACATCCGAAGGCACTTGGCGGTGTCTGGGACGCTCTCAGCTCATTCGTGCTCTCACTGTGACTACACGGCTACACAACTGCACTTCTTGCGAGACCATGTGAGGGTACACTTTGACCTGTCCCGGCGGCCCCGACCCGAGGCATACATGAAGTGTGAGCGGCTGGAACTAACAGCTTACTCTGAGGGAAATGGGACCGAACCTCCAGACAAGGTGTTGCTATTTCGTGATTGCGGAGAGCCCCTATCTCATGACGAGAGGTTTGAACCAATCTACTCACCGGGACCAATAGAGAGTGGCGATGACACCACAAAGGTCTTCATTGACATCTCAACCGGTCTCTCCAAGGTGACATCGGAAACTACGGAAGCGGATCCCACAGTCGAGGTCGTCCAGGATGTGAAACTGGAAGATGACGAAGAGGAAGTGTCAGTCAGAGCAGATAAGAGCTCAGATGCGGTTCTTGTTGTGTCTGACGATGCAGTCAAGTCCGAGAAGGAATCTGATTCGAGCAATTCAACTTCAAGCTCTTACTCGTCTGGCTCATCTTCTTCCAGTTCGTCGTCTTCTAACAACACCAAGTCGAGCTCCACGAGTGATTCTGAGTCTCAAACTGGCGATGACAAGAGATCTAGGAGTAAGGAGTGCGAGTTGTTGGACAATGTCAGCGAGGAGAAGACACGCACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGCTAGACAATGTTTGTGAGGTGAAGACGCACACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGTTGGACAATGTTAGCGAGTCAGGCGACAGTGAACTCAAGATCAAATTGAGCTGTAAACTGTCGGAGGATAGCAGCGAAGTTTCTGACTGGGAATAG
Protein Sequence: MSSPSMVHRGAGDTLVVRSVVSGTALYQQSGDELVPSTKNPVAEADSDPDLPQCKIKRNYSCPQCDYYSQNPRSYLYHLKDTHRQKIRVYECPKCLYASKHSQKLQRHLHMVHTMARVRFKKRRTRPLAPALTTHSQLKTLGGWTFLLSDIKRVDVPSLRHQEGGGSFSQTSRGWRFLLSDIRRTSVRWMFLISDIRRVDVLISDIRRVDVLISNIRRVDVPTSDIRRVDVPISDIRRTSEGWMFLSQTSGGWMFQVKLEPMDTKESCSEEDPKPIKGVIVGEYPCSACGFSSRSRALTARHERVAHLKKKFYRCVKCSYVTHMKARYTKHVKYHSMPMIKCELCDFRTPYKWNLDRHGRNHQGGGAYHCSLCNFTADIKQSLTVHEMNHHVPPVGGALAQQGRRRNKVGASDSAPQAEEGIDQAELELLRMEREDTQFTPVVTPSAPNAITTTTRNNMRSSSAAGIARRLSRSSPKATTTLQEMNERHNFHTDFIHPDDIVEHRNGSVYIKHLRCRACNYKAAFEWEIARHEGRVHGMVREVPPGGQKTSGKKVPRPIPNLIRIQSKVTPAPSSTSSPLPILRIPTPREPQMSDKDLNDICAKSCPNSFLKDFASLIGDEDAFKTSDPDKSVGKTSPPVAFKRKNASFFDQLKEKLGAADNLVCTWCGHESKCLSELVRHQKLHTGKAARGESSTSSLAVGAAELSSTRCQHCRHRCKTSADLVVHLQSCEEAKRNHEPSATEDQKDQDEEKLEEDDELPIENKVFVWNELPQPEESRPLPEDESESPPDSVAGVETTPDFQPAVAAVKKVRDNQVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSARDVGHERARVLMTDETGRRNYSKYNKYLTLMRVHEATAESSGTGRRSRGVAEGSQGQAETPLLRPPPSLLPAQEDPEGRKDLFPEGGEENPSDKRTSTEGRKTLWKCKKCNYRDASRELVLAHVKEHYQQRSLAAISISGDEASVGGRDQPPFRCGHCLQVSNWKHVIQRHCRLKHSGDIKVLIGQPEEEYTTPSPQPETREPETCSKCPYVASSASDLNDHLEQHQSRPGAIFKCYYCPFYVSEKRELLQHMNLHGVKESEEPSVQEKESVRQYHNVDVSPGKRYKCAGCPYVSNSKSQFLYHKQFHRPRGAPFKCGLCSYNVSRRHLLHQHLRVHGILVPPQKTSPVKTDQTHHDHIEEVSPLCRAPHAAVDTRDMADVPLVWVSRGDKFFKMFKCRYCPHVNLRKVNIQEHEKMHRARGGLEQDESVASPQQQHHCPDCNYICNNAGVLSSHAKVHQGVYGHVHCLVDSSKPDSDQVTKLRQYLYEDGDVLSAQDEQIQSYDEDEDDEQNMFRPILNTNQSDEQKEFLAEMQLTANDSGQLQEEQQRLLFFCPLCPARFLFEKELAIHRRFHEIRLAHQCESCSYAARQRHHLLSHLKVHSEEYQQRTVTLSAMYPTSPDHPQPNTAVVMEGTGVAGPLWIVIAGRTTTTLPESTKPAPVKQYPCYMCPAKFFKSVALDYHLSLHGGDGPHKCRRCNYAVKTLGNLAKHEMVHNTTEGPQEVSRLSPAVNVQQSVPLSGTDLFERKEAQKQSLASGVPVYQPPLHVDPQFGILMHGNPEYIYPTYLKNGRLKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCEKCDYSVKYYANYIQHMRKHQNNEEAQAAKKVKEGVPSEPGVLAPLEEVGMGTTEEPMVTTSPPFQPRPVKSIGWSASSNGGPQAQSATERQVALLQQFRRQAGPPEDENRRAFPCLYCPYSSPRKDGLDSHIRRHLAVSGTLSAHSCSHCDYTATQLHFLRDHVRVHFDLSRRPRPEAYMKCERLELTAYSEGNGTEPPDKVLLFRDCGEPLSHDERFEPIYSPGPIESGDDTTKVFIDISTGLSKVTSETTEADPTVEVVQDVKLEDDEEEVSVRADKSSDAVLVVSDDAVKSEKESDSSNSTSSSYSSGSSSSSSSSSNNTKSSSTSDSESQTGDDKRSRSKECELLDNVSEEKTRTLSEDEDSCEEESKVLDNVCEVKTHTLSEDEDSCEEESKVLDNVSESGDSELKIKLSCKLSEDSSEVSDWE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450093;
90% Identity: iTF_01445258;
80% Identity: -