Basic Information

Insect: Timema bartmani
Gene Symbol: -
Assembly: GCA_902151455.1
Location: CABFWB010004391.1:1380-15838[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.75 1.7e+02 5.1 1.0 1 23 60 83 60 83 0.94

2 19 0.029 6.6 9.6 3.5 1 23 90 113 90 113 0.97

3 19 0.38 85 6.1 0.1 1 23 327 350 327 350 0.96

4 19 0.038 8.6 9.2 0.4 2 23 384 405 383 405 0.97

5 19 1.2 2.8e+02 4.4 2.3 2 23 719 740 718 740 0.96

6 19 0.39 87 6.0 3.8 2 21 765 784 764 785 0.94

7 19 0.012 2.6 10.8 0.1 2 23 1174 1195 1174 1195 0.96

8 19 0.026 5.9 9.7 1.2 1 23 1203 1225 1203 1225 0.98

9 19 0.046 10 8.9 1.5 1 23 1255 1277 1255 1277 0.96

10 19 0.021 4.8 10.0 4.4 1 23 1284 1306 1284 1306 0.99

11 19 0.14 32 7.4 2.3 1 23 1406 1428 1406 1428 0.96

12 19 0.97 2.2e+02 4.8 0.3 1 23 1522 1544 1522 1544 0.96

13 19 0.52 1.2e+02 5.6 5.5 1 23 1550 1572 1550 1572 0.98

14 19 0.6 1.4e+02 5.4 0.2 1 23 1635 1657 1635 1657 0.96

15 19 0.011 2.4 10.9 1.1 1 23 1663 1685 1663 1685 0.97

16 19 0.009 2 11.2 2.6 1 23 1768 1790 1768 1790 0.97

17 19 0.00011 0.025 17.2 2.1 1 23 1796 1818 1796 1818 0.99

18 19 0.0014 0.31 13.8 0.2 1 23 1912 1934 1912 1934 0.98

19 19 0.097 22 7.9 5.6 1 23 1944 1966 1944 1966 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.75	1.7e+02	5.1	1.0	1	23	60	83	60	83	0.94
2	19	0.029	6.6	9.6	3.5	1	23	90	113	90	113	0.97
3	19	0.38	85	6.1	0.1	1	23	327	350	327	350	0.96
4	19	0.038	8.6	9.2	0.4	2	23	384	405	383	405	0.97
5	19	1.2	2.8e+02	4.4	2.3	2	23	719	740	718	740	0.96
6	19	0.39	87	6.0	3.8	2	21	765	784	764	785	0.94
7	19	0.012	2.6	10.8	0.1	2	23	1174	1195	1174	1195	0.96
8	19	0.026	5.9	9.7	1.2	1	23	1203	1225	1203	1225	0.98
9	19	0.046	10	8.9	1.5	1	23	1255	1277	1255	1277	0.96
10	19	0.021	4.8	10.0	4.4	1	23	1284	1306	1284	1306	0.99
11	19	0.14	32	7.4	2.3	1	23	1406	1428	1406	1428	0.96
12	19	0.97	2.2e+02	4.8	0.3	1	23	1522	1544	1522	1544	0.96
13	19	0.52	1.2e+02	5.6	5.5	1	23	1550	1572	1550	1572	0.98
14	19	0.6	1.4e+02	5.4	0.2	1	23	1635	1657	1635	1657	0.96
15	19	0.011	2.4	10.9	1.1	1	23	1663	1685	1663	1685	0.97
16	19	0.009	2	11.2	2.6	1	23	1768	1790	1768	1790	0.97
17	19	0.00011	0.025	17.2	2.1	1	23	1796	1818	1796	1818	0.99
18	19	0.0014	0.31	13.8	0.2	1	23	1912	1934	1912	1934	0.98
19	19	0.097	22	7.9	5.6	1	23	1944	1966	1944	1966	0.97

Sequence Information

Coding Sequence: ATGTCCTCACCATCCATGGTGCACCGTGGTGCAGGAGACACGCTGGTGGTCCGCAGCGTGGTGAGTGGGACTGCTCTCTACCAACAGTCAGGAGACGAGCTGGTCCCAAGCACAAAGAACCCAGTGGCCGAGGCCGACTCTGACCCAGACTTGCCTCAGTGCAAGATCAAGCGCAACTATTCATGTCCTCAATGCGACTATTACTCCCAGAACCCACGCTCCTACCTGTACCATCTGAAGGACACCCACAGACAGAAGATCCGAGTATACGAATGCCCCAAGTGTCTGTACGCGTCCAAACACAGTCAGAAGCTGCAGAGACATCTCCACATGGTTCACACCATGGCCCGTGTCAGGTTCAAGAAACGAAGGACCCGGCCCCTCGCCCCGGTACTAACAACTCACAGCCAGTTGAAGACATCATCAGGAGGGTGGATGTTCCTTATCTTAGACATCAATAGGGGGGATGTTCCTTCTCTCAGACATCAGGAGGGTGTATTTTCCTCATCTCAGACATCAGGAGGGTGGATGTTCCTCATCTCAGACATCAGGAGGGTGGATGCTATTTATCTCAGACATCAGGAGGACATCAGGAGGGTGGATGCTATTTATCTCAGACATCAGGAGGGTGGACGTTCCTTCTCTCAGACATCAAGAGGGTGGACGTTCCTTCTCTCAGACATCAAGAGGGTGGACGTTCCTTCTCTCAGACATCAAGAGGGTGGATGTTCCTTCTCTGACATCAGGAGGGTGGATGTTCCTATCTCAGACACGAGGAGTGTGGATGCTCCTACCTCAGACATCAGGAGGGTGGATGTTTTTCTTATCTCAGACATCAGGAGGGTGGATATTCCTATCTCAGACATCAGGAGGACATCAGGAGGGTGGATGTTCCAGGTGAAGCTGGAGCCCATGGATACGAAAGAGAGTTGTAGCGAGGAAGATCCAAAGCCTATAAAGGGGGTCATTGTTGGAGAGTACCCCTGCTCTGCCTGCGGGTTCTCTAGTCGCAGCCGCGCTCTCACAGCCCGCCACGAGCGTGTGGCACACCTCAAGAAGAAGTTCTATCGTTGTGTGAAGTGCAGCTATGTGACACACATGAAGGCGCGCTATACCAAGCACGTCAAGTACCACTCCATGCCCATGATCAAGTGCGAGCTGTGTGACTTCCGCACTCCTTACAAATGGAACCTGGACCGTCATGGCCGCAACCACCAGGGGGGCGGAGCCTACCACTGCTCTCTCTGCAACTTCACCGCCGACATCAAGCAGAGTCTGACGGTGCACGAGATGAACCACCACGTGCCTCCAGTTGGTGGTGCACTAGCGCAGCTGGGCAGGAGGAGGAACAAGGTCGGCGCCAGCGACTCTGCCCCCCAAGCCGAGGAGGGAATCGACCAGGCTGAGCTGGAACTGCTGAGGATGGAGCGGGAGGACACGCAGtTTACCCCTGTAGTGACCCCCAGCGCACCCAATGCCATCACCACAACAACCCGCAACAACATGCGTTCATCCTCCGCGGCGGGCATTGCTCGTCGTTTGTCACGCTCCTCACCCAAAGCCACGACGACGCTCCAGGAGATGAACGAACGTCACAACTTCCACACTGACTTTATCCATCCGGATGACATTGTGGAACATCGGAACGGATCTGTTTACATCAAGCACCTGAGGTGCCGGGCCTGTAACTACAAGGCGGCCTTTGAGTGGGAGATAGCTCGGCACGAAGGCCGAGTACACGGGATGGTCCGCGAGGTGCCGCCAGGGGGCCAAAAAACATCTGGTAAAAAGGTCCCTCGGCCTATCCCCAACCTCATCCGCATACAAAGCAAAGCGACCCCCGCCCCCTCTTCCACATCGTCTCCCTTGCCCATACTGCGCATACCCACCGTGAGGGGCAGAGTCCCGGCTGCATCGCTGCTCAAGCCGCGAGAGCCCCAGATGAGTGATAAGGACCTAAATGATATCTGTGCCAAGTCCTGCCCAAACAGTTTTTTGAAAGACTTTGCTTCATTGATCGGCGACGAAGACGCCTTTAAAACTTCAGATCCAGACAAGTCTGTGGGTAAGACCAGTCCCCCGGCGGCGTTCAAGCGTAAGAACGCGTCGTTCTTCGACCAGTTGAAGGAGAAGCTGGGCGCTGCTGATAACTTGGTGTGCACTTGGTGTGGCCACGAGAGCAAGTGTTTGTCCGAGTTGGTGAGACACCAGAAACTACACACGGGCAAGGCCGCGAGGGGGGAGAGCTCGACCAGCAGTCTTGCCGTCGGTGCAGCCGAATTGTCTTCTACCAGATGTCAGCACTGTCGACACCGGTGCAAGACCAGCGCTGACCTGGTGGTGCACCTGCAGTCGTGCGAGGAAGCCAAGAGGAACCACGAACCGAGCGCTACCGAGGACCAGAAGGACCAGGATGAGGAGAAGCTGGAGGAGGACGATGAGCTCCCTATTGAGAATAAGGTGTTTGTGTGGAATGAACTGCCCCAGCCTGAGGAGTCCAGACCGCTCCCCGAGGATGAGAGCGAGTCTCCTCCAGACAGTGTAGCAGGAGTGGAGACTACTCCAGACTTCCAGCCGGCCGTTGCCGCAGTCAAGAAGGTGAGAGACAATCAGGCAGTTATGTTGCCCGACGTCGGACCATCTAAAGACTACATCTTCGGGTCATCAGTAGCACTTGTACTTAGAGGGCATCCGTCGAGCCCATGGTCCCAAGATCAAGTTCTGTACGGGTCACGCGCAGTGTCGGTGTTCAAGTGCCCACACTGCTCCTTTTGGGCATCCACCGCATCCCGCTTCCACGTACACATTGTGGGCCACCTCAACAAGAAGCCGTTCGAATGCTCGCTGTGCGCATACCGCTCCAACTGGCGCTGGGACATCACTAAGCACATCAGACTCAAGTCTGCGAGGGATGTAGGACACGAACGGGCGCGTGTGCTGATGACAGACGAGACCGGTCGCCGTAACTATTCCAAGTACAACAAGTACCTCACACTGATGAGGGTTCATGAGGCCACGGCAGAGAGTAGCGGGACCGGACGAAGGTCCCGAGGCGTGGCGGAGGGAAGTCAGGGGCAAGCCGAGACACCCCTGCTGAGACCACCGCCCAGCCTGTTGCCAGCGCAAGAGGATCCCGAAGGGAGGAGAGACCTGTTCCCTGAGGGCGGGGAGGAAAACCCGTCAGACAAGAGAACTAGCACCGAGGGCAGAAAGACACTCTGGAAGTGCAAGAAGTGTAACTACAGGGATGCAAGTCGTGAGCTGGTGTTGGCGCACGTCAAGGAACACTATCAGCAACGCTCGCTGGCAGCAATCAGCATTAGCGGTGACGAGGCAAGTGTCGGCGGGCGAGACCAGCCACCATTCCGGTGTGGTCATTGCCTGCAGGTATCAAACTGGAAGCATGTGATTCAGCGGCATTGTCGTCTCAAACACAGCGGGGACATAAAGGTGCTCATAGGACAACCGGAGGAAGAATACACAACTCCATCTCCTCAGCCAGAATCTAGAGAGCCTGAAACTTGCAGCAAGTGTCCATATGTTGCGTCCAGTGCTAGTGACCTGAACGATCACTTGGAGCAGCACCAGTCCCGTCCAGGAGCCATATTCAAGTGCTACTACTGTCCTTTCTATGTCAGCGAGAAAAGGGAGCTGTTGCAACACATGAACCTCCATGGGGTCAAGGAGTCGGAGGAACCGTCGGTGCAGGAGAAAGAGTCAGTGCGACAGTACCATAACGTGGATGTTAGCCCGGGTAAACGCTACAAATGTGCAGGCTGTCCATATGTGAGCAACAGCAAGTCCCAGTTCCTCTATCACAAGCAGTTTCACCGTCCCCGTGGGGCCCCCTTCAAGTGTGGCCTGTGTTCCTACAACGTGAGTCGACGGCACCTTCTGCATCAGCATCTGCGCGTGCATGGTATACTGGTCCCCCCGCAGAAAACTAGCCCTGTCAAGACTGACCAAACTCATCATGACCACATAGAGGAGGTATCACCCCTCTGCCGCGCCCCGCATACTGCAGTAGATACGCGCGACATGGCTGACGTGCCACTAGTCTGGGTCTCCCGCGGCGACAAGTTCTTCAAGATGTTCAAATGCCGGTACTGCCCACACGTGAACCTGCGCAAGGTGAACATCCAGGAACATGAGAAGATGCATCGGGCCCGAGGGGGTCTCGAGCATGACGAGTCCGTGGCTTCACCCCAGCAACAGCACCATTGTCCCGACTGCAACTACATCTGCAACAATGCCGGCGTGCTGTCCTCCCATGCCAAGGTCCACCAGGGTGTGTACGGCCACGTACACTGTCTCGTTGACTCGTCCAAACCTGACTCTGACCAGGTAACAAAATTGCGGCAATACCTCTACGAGGATGGAGATGTCTTAAGCGCGCATGACGAACAGATACAAAGTTACGATGAGGACGAGGATGATGAACAGAATATGTTCCGGCCTATCCTGAACACGAACCAAAGTGACGAACAAAAGGAGTTCCTTGCCGAGATGCAGCTGACCGCCAACGACTCAGGACAGCTGCAAGAGGAACAGCAGAGACTGCTGTTCTTTTGCCCGCTATGCCCAGCGAGGTTTCTTTTTGAGAAGGAGTTGGCTATCCACAGGCGGTTCCATGAGATTCGTTTAGCACATCGGTGCGAGTCCTGCTCGTACGCTGCCCGCCAGCGGCATCACCTTCTATCACATCTTAAGGTACACTCGGAGGAGTACCAGCAGCGCACAGTCACACTCTCCGCCATGTACCCCACCTCACCGGACCACCCTCAACCTAACACAGCCGTTGTGATGGAAGGTACTGGAGTAGCCGGGCCCCTCTGGATCGTCATCGCCGGCCGGACGACCACTACTCTCCCGGAGTCCACAAAGCCCGCCCCTGTGAAACAATACCCGTGTTACATGTGCCCCGCCAAGTTCTTCAAGAGTGTGGCACTAGACTACCATCTATCTCTGCACGGGGGTGACGGGCCGCACAAATGTAGGCGCTGTAACTATGCTGTCAAAACTCTGGGGAATCTGGCCAAGCATGAGATGGTCCACAATGCGACCGAGGGGCCCCAAGAGGCGTCTCGTCTCTCTCCTGCCGTCAATGTCCAGCAGAGTGTTCCACTGTCTGGGACGGACCTGTTTGAGCGTAAGGAGGCCCAGAAGCAAAGCTTGGCCAGCGGGGTCCCAGTTTATCAGCCACCTCTTCATGTGGACCCTCAGTTCGGCATCTTGATGCATGGGAACCCCGAGTACATCTACCCTACATACCTGAAAAATGGCCGCCTAAAGGAGAAACGATACAAGTGTCATAAGTGTCCAAGTGCTTTTGAGAAGCGTGAACAATATAAGGTGCACTTGTCTCTGCATGGCTCCAAGCAGCGCTACAAGTGTGAAAAGTGCGACTACTCTGTTAAGTACTACGCCAACTACATCCAGCACATGAGGAAACATCAGAATAATGAGGAGGCCCAGGCGGCCAAGAAGGTTAAGGAGGGTGTGCCGTCTGAGCCAGGAGTCTTGGCACCTCTAGAGGAGGTCGGGATGGGGACGACAGAGGAGCCCTTGGTTACCACGTCTCCACCCTTTCAGCCACGCCCTGTTAAGTCGATTGGGTGGTCAGCCTTGTCTAATGGGGGACCCCAGGCACAGAGCGCAACGGAACGTCAGGTGGCATTACTCCAGCAATTTCGGCGCCAAGCTGGTCCCCCCGAGGATGAGAACCGTAGGGCGTTCCCCTGCCTGTACTGCCCCTACTCAAGTCCCAGAAAGGATGGGCTGGACAGCCACATCCGAAGGCACTTGGCGGTGTCTGGGACTCTCTCAGCTCATTCGTGCTCTCACTGTGACTACACGGCTACACAACTGCACTTTTTGCGAGACCACGTGAGGGTACACTTTGACCTGTCCCGGCGGCTCCGACCCGAAGCATACATGAAGTGTGAGCGGCTGGAACTAACAGCTTACTCTGAGGGAGATGGGACCGAACCTCCAGACAAGGTGTTGCTATTTCGTGACTGCGGAGAGCCCCTGTCTCATGACGAGAGGTTTGAACCAATCTACTCACCGGGACCAATAGAGAATGGTGATGACACCACAAAGGTCTTCATTGACATCTCAACCGGTCTCTCCAAGGTGACATCGGAAACTACGGAAGCGGATCCCACAGTCGAGGTCGTCCAGGATGTGAAACTTGAAGATGACGAAGAGGAAGTGTCAGTCAGAGCAGATAAGAGCTCTGATGCAGTTATTGTGTCTGACGATGCAGTTAAGTCCGAGAAGGAATCTGATTCAAGCAATTCAACTTCAAGCTCTTACTCGTCTGGCTCATCTTCTTCCAGTTCGTCGTCTTCTAACAACACCAAGTCGAGCTCCACTAGTGATTCTGAGTCTCAAACTGGTGATGACAAGAGATCTAGGAGTAAGGAGTGCGAGTTGTTGGACAATGTCAGCGAGGAGAAGACACGCACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGTTGGACAATGTCTGTGAGGTGAAGACGCGCACCTTGTCAGAGGATGAGGACAGCTGCGAGGAGGAAAGTAAAGTGTTGGACAATGTTAGCGAGTCAGGCGACAGTGAACTCAAGATCAAATTGAACTGTAAACTGTCTGAGGATAGCAGCGAAGTTTCAGACTGGGAATAG
Protein Sequence: MSSPSMVHRGAGDTLVVRSVVSGTALYQQSGDELVPSTKNPVAEADSDPDLPQCKIKRNYSCPQCDYYSQNPRSYLYHLKDTHRQKIRVYECPKCLYASKHSQKLQRHLHMVHTMARVRFKKRRTRPLAPVLTTHSQLKTSSGGWMFLILDINRGDVPSLRHQEGVFSSSQTSGGWMFLISDIRRVDAIYLRHQEDIRRVDAIYLRHQEGGRSFSQTSRGWTFLLSDIKRVDVPSLRHQEGGCSFSDIRRVDVPISDTRSVDAPTSDIRRVDVFLISDIRRVDIPISDIRRTSGGWMFQVKLEPMDTKESCSEEDPKPIKGVIVGEYPCSACGFSSRSRALTARHERVAHLKKKFYRCVKCSYVTHMKARYTKHVKYHSMPMIKCELCDFRTPYKWNLDRHGRNHQGGGAYHCSLCNFTADIKQSLTVHEMNHHVPPVGGALAQLGRRRNKVGASDSAPQAEEGIDQAELELLRMEREDTQFTPVVTPSAPNAITTTTRNNMRSSSAAGIARRLSRSSPKATTTLQEMNERHNFHTDFIHPDDIVEHRNGSVYIKHLRCRACNYKAAFEWEIARHEGRVHGMVREVPPGGQKTSGKKVPRPIPNLIRIQSKATPAPSSTSSPLPILRIPTVRGRVPAASLLKPREPQMSDKDLNDICAKSCPNSFLKDFASLIGDEDAFKTSDPDKSVGKTSPPAAFKRKNASFFDQLKEKLGAADNLVCTWCGHESKCLSELVRHQKLHTGKAARGESSTSSLAVGAAELSSTRCQHCRHRCKTSADLVVHLQSCEEAKRNHEPSATEDQKDQDEEKLEEDDELPIENKVFVWNELPQPEESRPLPEDESESPPDSVAGVETTPDFQPAVAAVKKVRDNQAVMLPDVGPSKDYIFGSSVALVLRGHPSSPWSQDQVLYGSRAVSVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCAYRSNWRWDITKHIRLKSARDVGHERARVLMTDETGRRNYSKYNKYLTLMRVHEATAESSGTGRRSRGVAEGSQGQAETPLLRPPPSLLPAQEDPEGRRDLFPEGGEENPSDKRTSTEGRKTLWKCKKCNYRDASRELVLAHVKEHYQQRSLAAISISGDEASVGGRDQPPFRCGHCLQVSNWKHVIQRHCRLKHSGDIKVLIGQPEEEYTTPSPQPESREPETCSKCPYVASSASDLNDHLEQHQSRPGAIFKCYYCPFYVSEKRELLQHMNLHGVKESEEPSVQEKESVRQYHNVDVSPGKRYKCAGCPYVSNSKSQFLYHKQFHRPRGAPFKCGLCSYNVSRRHLLHQHLRVHGILVPPQKTSPVKTDQTHHDHIEEVSPLCRAPHTAVDTRDMADVPLVWVSRGDKFFKMFKCRYCPHVNLRKVNIQEHEKMHRARGGLEHDESVASPQQQHHCPDCNYICNNAGVLSSHAKVHQGVYGHVHCLVDSSKPDSDQVTKLRQYLYEDGDVLSAHDEQIQSYDEDEDDEQNMFRPILNTNQSDEQKEFLAEMQLTANDSGQLQEEQQRLLFFCPLCPARFLFEKELAIHRRFHEIRLAHRCESCSYAARQRHHLLSHLKVHSEEYQQRTVTLSAMYPTSPDHPQPNTAVVMEGTGVAGPLWIVIAGRTTTTLPESTKPAPVKQYPCYMCPAKFFKSVALDYHLSLHGGDGPHKCRRCNYAVKTLGNLAKHEMVHNATEGPQEASRLSPAVNVQQSVPLSGTDLFERKEAQKQSLASGVPVYQPPLHVDPQFGILMHGNPEYIYPTYLKNGRLKEKRYKCHKCPSAFEKREQYKVHLSLHGSKQRYKCEKCDYSVKYYANYIQHMRKHQNNEEAQAAKKVKEGVPSEPGVLAPLEEVGMGTTEEPLVTTSPPFQPRPVKSIGWSALSNGGPQAQSATERQVALLQQFRRQAGPPEDENRRAFPCLYCPYSSPRKDGLDSHIRRHLAVSGTLSAHSCSHCDYTATQLHFLRDHVRVHFDLSRRLRPEAYMKCERLELTAYSEGDGTEPPDKVLLFRDCGEPLSHDERFEPIYSPGPIENGDDTTKVFIDISTGLSKVTSETTEADPTVEVVQDVKLEDDEEEVSVRADKSSDAVIVSDDAVKSEKESDSSNSTSSSYSSGSSSSSSSSSNNTKSSSTSDSESQTGDDKRSRSKECELLDNVSEEKTRTLSEDEDSCEEESKVLDNVCEVKTRTLSEDEDSCEEESKVLDNVSESGDSELKIKLNCKLSEDSSEVSDWE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01450093;
90% Identity: iTF_01448007;
80% Identity: -