Tpod054853.1
Basic Information
- Insect
- Timema podura
- Gene Symbol
- Gzf1
- Assembly
- GCA_033556935.1
- Location
- JAVRXN010000013.1:17557772-17562828[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.14 27 7.3 0.3 2 23 4 25 3 25 0.96 2 21 4.4e-06 0.00085 21.4 0.7 1 23 35 57 35 57 0.98 3 21 9.8e-06 0.0019 20.3 1.6 1 23 63 86 63 86 0.97 4 21 0.14 26 7.3 1.9 1 23 93 115 93 115 0.96 5 21 1.9e-05 0.0036 19.5 1.5 1 23 121 144 121 144 0.98 6 21 7.4e-05 0.014 17.6 0.9 1 23 149 171 149 171 0.98 7 21 1.1e-05 0.0021 20.2 3.8 1 23 179 201 179 201 0.97 8 21 2.8e-07 5.4e-05 25.2 0.4 1 23 207 229 207 229 0.98 9 21 1.5e-06 0.00029 22.9 0.8 1 23 235 257 235 257 0.98 10 21 6.2e-07 0.00012 24.1 0.9 1 22 263 284 263 284 0.97 11 21 0.0008 0.15 14.3 1.1 1 23 338 361 338 361 0.95 12 21 1e-05 0.002 20.3 1.1 1 23 364 386 364 386 0.98 13 21 3.7e-05 0.0071 18.5 2.6 1 23 392 414 392 414 0.98 14 21 0.41 79 5.8 3.9 1 23 420 442 420 442 0.97 15 21 0.012 2.4 10.6 2.7 1 23 448 471 448 471 0.96 16 21 6.7e-05 0.013 17.7 0.5 1 23 476 498 476 498 0.98 17 21 2.5e-06 0.00048 22.2 0.6 1 23 508 530 508 530 0.97 18 21 0.00039 0.076 15.3 5.0 1 23 536 558 536 558 0.98 19 21 6e-07 0.00012 24.1 0.6 2 23 565 586 565 586 0.97 20 21 1.9e-05 0.0037 19.4 4.3 1 23 592 614 592 614 0.97 21 21 2.1e-06 0.00041 22.4 0.8 1 23 620 642 620 642 0.98
Sequence Information
- Coding Sequence
- ATGAAGAACAAGTGTCAACTGTGCAGACAAACATTCCTTCTCGAGTCGGAGTTGACGGCTCACATCCTTGACCATGCGAAGGATCCTGAAATGAGTCCTGGCTACCCCTGCCCTACATGCGGCCAAGTTTTTCCAAAACGCTTCTTAATGAAACGTCACTTGCGACGTCATGATGACGTCTGGCAGTACAAGTGCGACATCTGTTCCAAGTTCTACAagtcaaaatatagtttggaCGCGCACATGAAGTGGTCGCACTCGGGTGAGACAAAGAACCACTCGTGCTCGGTGTGCGGCTACAAAGCCTACCACCTATCTGCGATAAGGCAGCACGAGAAGATACACACAGGCGTGTTTGATTACACTTGTGGAGATTGCGGCAGAGGATTCCACACAAAGACCATGTTGAAGTCGCACAGGATAACCGCTCATGACGATGAACCTTTCAAGTGCAATTACTGCGGTAAAATCTACCGTTCCAAGGCAAACCGTGACGAGCATGTGAAAATCCACGACCCGGACTATGTCCACGTTCACCAGTGTGAACTGTGCGGGAAGACGTTTCACACCAAACCAGAGTTGAAGAAGCATCTGGCGAGGCACAGAGGCGACGAGAAGTACGTCTGTGAGGAATGTGGCAAACCGTTCAAATCTAAGACCACGCTTGTCAACCATACGCGCATACACAGCGGGGATAAACCTTACGTCTGCATGCTTTGCGGGAAAGCCTTCACCACTTCCTTTTTCCTTAAAACGCACATTCGCATTCATACTGGAGAGAAGCCGTTCTCGTGTGAAATTTGTTCCAAGTCGTTTTCTCAGAAATCTTCCTTGACTGTGCATACCCGGACAGCCGGCATAATCCTTAATTCACATCAAGACTTACGTAATACAAACTTGCCATGGATGCCAGATCTTGGTTCGACGTGGTCGCTAGAGCCGGCCTCTTCTGCAGTGACACAAACCCGCAAGGCGGACACTAAACCAGTGGTGCCGAATGACAGGGGACAGTTTGCGTGCCAGTGGTGTGATAAACAATGCATGAATGAATACATGCTGAGGCGCCACATCAAAGGCGCCCACACCACATACAAATGCCAGCTGTGCGGCAAGGAGTACCCCCAGCGCCGCATGTTGACGCGTCACGCCAAGAGTCACACCGAACTCAGACCTTTTTCCTGCGAGATCTGCGCCAGAAAGTTCAAGCAGATGTTTGAGTTGAGGAAGCACCAGAAAACTCACACGGGTAACAAGACTTTCGCCTGCCACATCTGCGACTTTTCTGCGTATTACAAGTGTGTCCTTAGGGAGCATGTGAAGAAACACAGCAGAGACTTTGGTTATCACTGTGAGGAGTGCGACAAAGGTTTTCACACCCCTCAGCAGGTGGACTCGCACAAGATAACCTACCACGGGGCCCAACCTTTCCAGTGCAACGTGTGCGGTAAAACCTACGCCGTGAAGAACAGGCTTAAGGTGCATAAACTGGTTCACAACCCTTCGTTCGTGGCAGAACGCAAGCACCAGTGTGAGGCGTGCGGTAAGACCTACAAGCGCGCCGGCGAGCTCGTGCGCCACATGAACCTTCACACGGGAGAGAACCGATACACGTGCAACGATTGCGGGAAGTGCATGACGAGCAAGTGTTCGCTCAGAGACCACGTGAAAATACACATGGGGGAGAGGCCGGCCGTGTGCGAGATCTGCGGGAAGGCATTTGTCCGGCACGATTACCTCAAAGTTCATCTGCGCTCTCACACGGGGGAGAAGCCGTATTTCTGTGAGACCTGCAACAAGTCTTTTACCCAGCATTCGTCGCTTGTTATTCACAGGCGCTACCATACGGGGCACAGGCCCTACGACTGCTCTGTGTGCAATAAAGGGTTTGTGTCTAAGACCCTTTTGAGGACGCACCAAAGAGTTCATAATCACGGAGCTCTCAATGCAAGATGA
- Protein Sequence
- MKNKCQLCRQTFLLESELTAHILDHAKDPEMSPGYPCPTCGQVFPKRFLMKRHLRRHDDVWQYKCDICSKFYKSKYSLDAHMKWSHSGETKNHSCSVCGYKAYHLSAIRQHEKIHTGVFDYTCGDCGRGFHTKTMLKSHRITAHDDEPFKCNYCGKIYRSKANRDEHVKIHDPDYVHVHQCELCGKTFHTKPELKKHLARHRGDEKYVCEECGKPFKSKTTLVNHTRIHSGDKPYVCMLCGKAFTTSFFLKTHIRIHTGEKPFSCEICSKSFSQKSSLTVHTRTAGIILNSHQDLRNTNLPWMPDLGSTWSLEPASSAVTQTRKADTKPVVPNDRGQFACQWCDKQCMNEYMLRRHIKGAHTTYKCQLCGKEYPQRRMLTRHAKSHTELRPFSCEICARKFKQMFELRKHQKTHTGNKTFACHICDFSAYYKCVLREHVKKHSRDFGYHCEECDKGFHTPQQVDSHKITYHGAQPFQCNVCGKTYAVKNRLKVHKLVHNPSFVAERKHQCEACGKTYKRAGELVRHMNLHTGENRYTCNDCGKCMTSKCSLRDHVKIHMGERPAVCEICGKAFVRHDYLKVHLRSHTGEKPYFCETCNKSFTQHSSLVIHRRYHTGHRPYDCSVCNKGFVSKTLLRTHQRVHNHGALNAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01447746; iTF_01450788;
- 90% Identity
- iTF_01447746; iTF_01450788;
- 80% Identity
- -